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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6416R-3 
 Symbol CG6416  Full Name CG6416 
 CG No CG6416  Old CG No CG6416 
 Synonyms anon-WO0153538.30, CG6416 
 Accession No (Link to NCBI) NM_176305.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCAGTTCAAAAACGGATCCCC 
 Primer Seq. 3'
aatctagaggtaccTATTTGCAGTTGATGCTGGCG 
 Predicted Fragment Size
466 
 IR fragment full Seq
0001 TCAGTTCAAA AACGGATCCC CAGTCTACTA CAAGGAGCAG CCAGACCTCA ATGAGTGCAT 
0061 TCAATACCAA CCCTACCGTA CAACTCCGCT GGTCCTGCCC GGCGCCAAAG TGAAGAAGGA 
0121 TGCGCCCACG ACAGAGTCCT ACTTGAGACA CTACCCCAAC CCGGCTGTGC GCGCCCACCC 
0181 AGGACACGAC TACCATGACA GTATCATGAA GCAGCGCGTG GCCGACACCA TGCTGCACAA 
0241 GGTGGTCGGT TCGGAAGCCG ACACTGGCCG CGTTTTCCAC AAGCAATTTA ACTCGCCCAT 
0301 TGGCCTGTAC TCCAACAACA ACATCGAGGA CACCATCAGA TCCACAGTTC CAATTTTCAT 
0361 CGATCTATCT TTCCTGGAAC AAAAACGTAT TATTCTGGAG CAACAAAAGC AAAAAGACCA 
0421 ACTGGCAGAG CAACAACGTC AACAACGCCA GCATCAACTG CAAATA 
 in silico PCR Fragment
0001 TCAGTTCAAA AACGGATCCC CAGTCTACTA CAAGGAGCAG CCAGACCTCA ATGAGTGCAT 
0061 TCAATACCAA CCCTACCGTA CAACTCCGCT GGTCCTGCCC GGCGCCAAAG TGAAGAAGGA 
0121 TGCGCCCACG ACAGAGTCCT ACTTGAGGCA CTACCCCAAC CCGGCTGTGC GCGCCCACCC 
0181 AGGACACGAC TACCATGACA GTATCATGAA GCAGCGCGTG GCCGACACCA TGCTGCACAA 
0241 GGTGGTCGGT TCGGAAGCCG ACACTGGCCG CGTCTTCCAC AAGCAATTCA ACTCGCCCAT 
0301 TGGCCTGTAC TCCAACAACA ACATCGAGGA CACCATCAGA TCCACAGTTC CAATTTTCAT 
0361 CGATCTATCT TTCCTGGAAC AAAAACGTAT TATTCTGGAG CAACAAAAGC AAAAAGACCA 
0421 ACTGGCAGAG CAACAACGTC AACAACGCCA GCATCAACTG CAAATA 
 Assemble Data

6416R-3.IR_full       1   TCAGTTCAAAAACGGATCCCCAGTCTACTACAAGGAGCAGCCAGACCTCAATGAGTGCAT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6416R-3.in silico     1   TCAGTTCAAAAACGGATCCCCAGTCTACTACAAGGAGCAGCCAGACCTCAATGAGTGCAT 60


6416R-3.IR_full       61  TCAATACCAACCCTACCGTACAACTCCGCTGGTCCTGCCCGGCGCCAAAGTGAAGAAGGA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6416R-3.in silico     61  TCAATACCAACCCTACCGTACAACTCCGCTGGTCCTGCCCGGCGCCAAAGTGAAGAAGGA 120


6416R-3.IR_full       121 TGCGCCCACGACAGAGTCCTACTTGAGACACTACCCCAACCCGGCTGTGCGCGCCCACCC 180
                          ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
6416R-3.in silico     121 TGCGCCCACGACAGAGTCCTACTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCC 180


6416R-3.IR_full       181 AGGACACGACTACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCTGCACAA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6416R-3.in silico     181 AGGACACGACTACCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCTGCACAA 240


6416R-3.IR_full       241 GGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTTTTCCACAAGCAATTTAACTCGCCCAT 300
                          ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
6416R-3.in silico     241 GGTGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACAAGCAATTCAACTCGCCCAT 300


6416R-3.IR_full       301 TGGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCAATTTTCAT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6416R-3.in silico     301 TGGCCTGTACTCCAACAACAACATCGAGGACACCATCAGATCCACAGTTCCAATTTTCAT 360


6416R-3.IR_full       361 CGATCTATCTTTCCTGGAACAAAAACGTATTATTCTGGAGCAACAAAAGCAAAAAGACCA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6416R-3.in silico     361 CGATCTATCTTTCCTGGAACAAAAACGTATTATTCTGGAGCAACAAAAGCAAAAAGACCA 420


6416R-3.IR_full       421 ACTGGCAGAGCAACAACGTCAACAACGCCAGCATCAACTGCAAATA 466
                          ||||||||||||||||||||||||||||||||||||||||||||||
6416R-3.in silico     421 ACTGGCAGAGCAACAACGTCAACAACGCCAGCATCAACTGCAAATA 466

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   448  NM_176305.2  CG6416-RG, transcript variant G (CG6416), mRNA 
74.77   335  NM_176304.2  CG6416-RH, transcript variant H (CG6416), mRNA 
74.33   333  NM_168286.2  CG6416-RA, transcript variant A (CG6416), mRNA 
74.33   333  NM_176306.1  CG6416-RJ, transcript variant J (CG6416), mRNA 
74.33   333  NM_176303.2  CG6416-RI, transcript variant I (CG6416), mRNA 
59.15   265  NM_139989.3  CG6416-RB, transcript variant B (CG6416), mRNA 
58.7   263  NM_168283.2  CG6416-RE, transcript variant E (CG6416), mRNA 
58.7   263  NM_168284.2  CG6416-RF, transcript variant F (CG6416), mRNA 
0   NM_176309.2  CG33205-RC, transcript variant C (CG33205), mRNA 
0   NM_176311.2  CG33205-RG, transcript variant G (CG33205), mRNA 
0   NM_176308.2  CG33205-RB, transcript variant B (CG33205), mRNA 
0   NM_001038908.1  CG33205-RH, transcript variant H (CG33205), mRNA 
0   NM_176310.2  CG33205-RF, transcript variant F (CG33205), mRNA 
0   NM_206001.1  CG33312-RA (CG33312), mRNA 
0   NM_001015231.1  CG40154-PB.3 (CG40154), mRNA 
0   NM_169912.1  CG4058-RB, transcript variant B (Nep4), mRNA 
0   NM_142647.2  CG4058-RA, transcript variant A (Nep4), mRNA 
0   10  NM_001031860.1  CG33653-RA, transcript variant A (Caps), mRNA 
0   10  NM_001031859.1  CG33653-RB, transcript variant B (Caps), mRNA 
0   16  NM_139495.1  CG9973-RA (CG9973), mRNA 
0   NM_057839.3  CG7147-RA, transcript variant A (kuz), mRNA 
0   NM_165047.1  CG7147-RB, transcript variant B (kuz), mRNA 
0   NM_001014481.1  CG7147-RC, transcript variant C (kuz), mRNA 
0   NM_001031858.1  CG33653-RC, transcript variant C (Caps), mRNA 
0   NM_079766.2  CG7005-RA (Esp), mRNA 
0   NM_057754.2  CG7005-RA (Esp), mRNA, type I CG4099-RA (Sr-CI), mRNA 
0   NM_080317.2  CG2647-RA (per), mRNA 
0   NM_057364.3  CG9999-RA (RanGap), mRNA 
0   NM_135285.2  CG6730-RA (Cyp4d21), mRNA 
0   NM_176591.1  CG15532-RC, transcript variant C (hdc), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
++ 
DB
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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