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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6232R-1 
 Symbol CG6232  Full Name CG6232 
 CG No CG6232  Old CG No CG6232 
 Synonyms CT19510, CG6232 
 Accession No (Link to NCBI) NM_135562.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Graca FA, Rai M, Hunt LC, Stephan A, Wang YD, Gordon B, Wang R, Quarato G, Xu B, Fan Y, Labelle M, Demontis F.
The myokine Fibcd1 is an endogenous determinant of myofiber size and mitigates cancer-induced myofiber atrophy.
Nat Commun (2022) 13(1) 2370 [ PubMed ID = 35501350 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGTGCAGGCGGATTTAACAAC 
 Primer Seq. 3'
aatctagaggtaccTCCAGTCACTCCATTTGTCCC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TGTGCAGGCG GATTTAACAA CTAAAGAGCG AATTAAGAAA CATCAGGATT GGCTCAGAGA 
0061 GCACCGAAAA CCTAAAACGA AAAAGAAAAT CTCAACTAAC TCCTATTATG AGCTGGCAAA 
0121 CTTGTGGCAT ACAAGAAAGG ATCTATCATC ACCCAAGCAA AAACCGAATA ATAAGGAGGA 
0181 ATACTTGGAG AACGAGACAA CTAGTAAAAT ATCCAATAAA TCCGATGAAA AAGTATTAAA 
0241 GTCAACAACG ATTATATCAT TAAACGCCAC GAATCCAAGT ACATCGACTT TCAAATCCGT 
0301 TCTGGAAACC ACTACATTAC CAAGTGTGAC TACCAAGGAT CTCTTCGAAA GTGGCAATGT 
0361 TGCGACCACA AGACAGACTC CGAAAGTCGA GGAGGTGCTC TCGTCTCCCA ATCCACCGCA 
0421 AGAAGCAACT TCGTCAACTT CAAAGAAGGC GAAGAAGAAG GTGTATCCAT ATCCACGTTG 
0481 GGACAAATGG AGTGACTGGA  
 in silico PCR Fragment
0001 TGTGCAGGCG GATTTAACAA CTAAAGAGCG AATTAAGAAA CATCAGGATT GGCTCAGAGA 
0061 GCACCGAAAA CCTAAAACGA AAAAGAAAAT CTCAATTAAC TCATATTATG AGCTGGCAAA 
0121 CTTGTGGCAT ACGAGAAAGG ATCTATCATC ACCCAAGCAA AAACCGAATA ATAAGGAGGA 
0181 ATACTTGGAG AACGAGACAA CTAGTAAAAT ATCCAATAAA TCCGATGAAA AAGTATTAAA 
0241 GTCATCAACG ATAATATCAT TAAATGCCAC CAATCCAAGT ACATCGACTT TCAAATCCGT 
0301 TCTGGAAACC ACTACATTAC CAAGTGTGAC TACCAAGGAT CTCTTTGAAA GTGGCAATGT 
0361 TGCGACCACA AGACAGACTC CGAAAGTCGA GGAGGTGTTC TCGTCTCCCA ATCCACCGCA 
0421 AGAAGCAACT TCGTCAACTT CAAAAAAGGC GAAAAAGAAG GTGTATCCAT ATCCACGTTG 
0481 GGACAAATGG AGTGACTGGA  
 Assemble Data

6232R-1.IR_full       1   TGTGCAGGCGGATTTAACAACTAAAGAGCGAATTAAGAAACATCAGGATTGGCTCAGAGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6232R-1.in silico     1   TGTGCAGGCGGATTTAACAACTAAAGAGCGAATTAAGAAACATCAGGATTGGCTCAGAGA 60


6232R-1.IR_full       61  GCACCGAAAACCTAAAACGAAAAAGAAAATCTCAACTAACTCCTATTATGAGCTGGCAAA 120
                          ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
6232R-1.in silico     61  GCACCGAAAACCTAAAACGAAAAAGAAAATCTCAATTAACTCATATTATGAGCTGGCAAA 120


6232R-1.IR_full       121 CTTGTGGCATACAAGAAAGGATCTATCATCACCCAAGCAAAAACCGAATAATAAGGAGGA 180
                          |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
6232R-1.in silico     121 CTTGTGGCATACGAGAAAGGATCTATCATCACCCAAGCAAAAACCGAATAATAAGGAGGA 180


6232R-1.IR_full       181 ATACTTGGAGAACGAGACAACTAGTAAAATATCCAATAAATCCGATGAAAAAGTATTAAA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6232R-1.in silico     181 ATACTTGGAGAACGAGACAACTAGTAAAATATCCAATAAATCCGATGAAAAAGTATTAAA 240


6232R-1.IR_full       241 GTCAACAACGATTATATCATTAAACGCCACGAATCCAAGTACATCGACTTTCAAATCCGT 300
                          |||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
6232R-1.in silico     241 GTCATCAACGATAATATCATTAAATGCCACCAATCCAAGTACATCGACTTTCAAATCCGT 300


6232R-1.IR_full       301 TCTGGAAACCACTACATTACCAAGTGTGACTACCAAGGATCTCTTCGAAAGTGGCAATGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
6232R-1.in silico     301 TCTGGAAACCACTACATTACCAAGTGTGACTACCAAGGATCTCTTTGAAAGTGGCAATGT 360


6232R-1.IR_full       361 TGCGACCACAAGACAGACTCCGAAAGTCGAGGAGGTGCTCTCGTCTCCCAATCCACCGCA 420
                          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
6232R-1.in silico     361 TGCGACCACAAGACAGACTCCGAAAGTCGAGGAGGTGTTCTCGTCTCCCAATCCACCGCA 420


6232R-1.IR_full       421 AGAAGCAACTTCGTCAACTTCAAAGAAGGCGAAGAAGAAGGTGTATCCATATCCACGTTG 480
                          |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
6232R-1.in silico     421 AGAAGCAACTTCGTCAACTTCAAAAAAGGCGAAAAAGAAGGTGTATCCATATCCACGTTG 480


6232R-1.IR_full       481 GGACAAATGGAGTGACTGGA 500
                          ||||||||||||||||||||
6232R-1.in silico     481 GGACAAATGGAGTGACTGGA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135562.2  CG6232-RA (CG6232), mRNA 
0   NM_164742.1  CG13784-RB, transcript variant B (CG13784), mRNA 
0   NM_001043328.1  CG8144-RK, transcript variant K (ps), mRNA 
0   NM_001043329.1  CG8144-RG, transcript variant G (ps), mRNA 
0   NM_001043331.1  CG8144-RH, transcript variant H (ps), mRNA 
0   NM_001043327.1  CG8144-RF, transcript variant F (ps), mRNA 
0   NM_169284.2  CG8144-RD, transcript variant D (ps), mRNA 
0   NM_001043326.1  CG8144-RI, transcript variant I (ps), mRNA 
0   NM_001043330.1  CG8144-RJ, transcript variant J (ps), mRNA 
0   NM_169285.3  CG8144-RC, transcript variant C (ps), mRNA 
0   NM_058063.3  CG4494-RA (smt3), mRNA 
0   NM_140524.2  CG12301-RA (CG12301), mRNA 
0   NM_170103.1  CG5394-RB, transcript variant B (Aats-glupro), mRNA 
0   NM_166964.1  CG32498-RD, transcript variant D (dnc), mRNA 
0   NM_166962.1  CG32498-RC, transcript variant C (dnc), mRNA 
0   NM_166966.1  CG32498-RM, transcript variant M (dnc), mRNA 
0   NM_166967.1  CG32498-RA, transcript variant A (dnc), mRNA 
0   NM_166969.1  CG32498-RE, transcript variant E (dnc), mRNA 
0   NM_166968.1  CG32498-RN, transcript variant N (dnc), mRNA 
0   NM_166970.1  CG32498-RG, transcript variant G (dnc), mRNA 
0   NM_080322.2  CG32498-RF, transcript variant F (dnc), mRNA 
0   NM_166971.1  CG32498-RL, transcript variant L (dnc), mRNA 
0   NM_166960.1  CG32498-RB, transcript variant B (dnc), mRNA 
0   NM_166959.1  CG32498-RO, transcript variant O (dnc), mRNA 
0   NM_166961.1  CG32498-RI, transcript variant I (dnc), mRNA 
0   NM_166965.1  CG32498-RJ, transcript variant J (dnc), mRNA 
0   NM_166963.1  CG32498-RK, transcript variant K (dnc), mRNA 
0   NM_167278.1  CG11759-RA (Kap3), mRNA 
0   NM_166709.2  CG30428-RA (CG30428), mRNA 
0   NM_165269.1  CG10602-RD, transcript variant D (CG10602), mRNA 

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