National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock discarded request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6230R-1 
 Symbol CG6230  Full Name CG6230 
 CG No CG6230  Old CG No CG6230 
 Synonyms dCOD1, BcDNA:GH06032, CG6230 
 Accession No (Link to NCBI) NM_135646.2 
 Inserted Chr. ll 
 Insertional Mutation  3 lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Liu Y, Ge Q, Chan B, Liu H, Singh SR, Manley J, Lee J, Weideman AM, Hou G, Hou SX.
Whole-animal genome-wide RNAi screen identifies networks regulating male germline stem cells in Drosophila.
Nat Commun (2016) 7 12149 [ PubMed ID = 27484291 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGACCGAGGCAGCTGGAGCA 
 Primer Seq. 3'
aatctagaggtaccGACCGAATGGGGACGATCTTC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGACCGAGG CAGCTGGAGC AACCAACCCA GGAGGAGCCG CCGGAGACGC GGAATCGTAC 
0061 GGCAAAGAAA TGGCTCTGCA GTCCGGTAGG CCGAAAGAGC CAACCAAGTT GGACGACCTG 
0121 GTGCAATATG TGAGCCTCCA TGTTCGCATA CCCACGCCGT TGACCGGTGT TGTGCTGCCC 
0181 TTTGTGCCAC TTTACCTGTC GGCATTCTAC CTGTGGATCA ACGTTACGGG TGGACAGGAG 
0241 AATGATACCA CCAATAACGA TGTGATAACT GCCGATAACC AAACGACCAC GGATAATATA 
0301 ACAACTTGGA ATGACGTGGG ATTCATCGGC GTACTAGCCA TTGCCTTTCT GCACATTCTG 
0361 ACGCTGCTCT TCTGCTACTG GAGCGTTCAC GTGCTGGCCT TCCTCACTTG CCGTCGTGTA 
0421 AAGCTCCCCG GCGCCAATGT GCTGGCCAAA GTCGTACCCA CTCCCAACAA TGGCAACTCG 
0481 AAGATCGTCC CCATTCGGTC  
 in silico PCR Fragment
0001 ATGACCGAGG CAGCTGGAGC AACCAACCCA GGAGGAGCCG CCGGAGACGC GGAATCGTAC 
0061 GGCAAAGAAA TGGCTCTGCA GTCCGGTAGG CCGAAAGAGC CAACCAAGTT GGACGACCTG 
0121 GTGCAATATG TGAGCCTCCA TGTTCGCATA CCCACGCCGT TGACCGGTGT TGTGCTGCCC 
0181 TTTGTGCCAC TTTACCTGTC GGCATTCTAC CTGTGGATCA ACGTTACGGG TGGACAGGAG 
0241 AATGATACCA CCAATAACGA TGTGATAACT GCCGATAACC AAACGACCAC GGATAATATA 
0301 ACAACTTGGA ATGACGTGGG ATTCATCGGC GTACTAGCCA TTGCCTTTCT GCACATTCTG 
0361 ACGCTGCTCT TCTGCTACTG GAGCGTTCAC GTGCTGGCCT TCCTCACTTG CCGTCGTGTA 
0421 AAGCTCCCCG GCGCCAATGT GCTGGCCAAA GTCGTACCCA CTCCCAACAA TGGCAACTCG 
0481 AAGATCGTCC CCATTCGGTC  
 Assemble Data
 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.