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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
5940R-1 |
| Symbol |
CycA |
Full Name |
Cyclin A |
| CG No |
CG5940 |
Old CG No |
CG5940 |
| Synonyms |
cycA, DmcycA, 1449/05, 1329/16, 0545/13, 0521/06, 0245/34, 0104/07, 0046/23, 0040/24, 0033/02, S(rux)3B, l(3)183, rsg11, l(3)rsg11, l(3)neo114, l(3)j3C8, l(3)68Ea, l(3)03946, hari, CG5940, anon-WO0140519.128, CycA |
| Accession No (Link to NCBI) |
NM_079306.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Vasavan B, Das N, Kahnamouei P, Trombley C, Swan A.
Skp2-Cyclin A Interaction Is Necessary For Mitotic Entry and Maintenance of Diploidy.
J Mol Biol (2024) 168505
[
PubMed ID = 38423454
]
[
RRC reference
]
Ibaraki K, Nakatsuka M, Ohsako T, Watanabe M, Miyazaki Y, Shirakami M, Karr TL, Sanuki R, Tomaru M, Takano-Shimizu-Kouno T.
A cross-species approach for the identification of Drosophila male sterility genes.
G3 (Bethesda) (2021) 11(8)
[
PubMed ID = 34849808
]
[
RRC reference
]
Vaccaro A, Kaplan Dor Y, Nambara K, Pollina EA, Lin C, Greenberg ME, Rogulja D.
Sleep Loss Can Cause Death through Accumulation of Reactive Oxygen Species in the Gut.
Cell (2020) 181(6) 1307-1328.e15
[
PubMed ID = 32502393
]
[
RRC reference
]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121
[
PubMed ID = 31034473
]
[
RRC reference
]
Rogulja D, Young MW.
Control of sleep by cyclin A and its regulator.
Science (2012) 335(6076) 1617-21
[
PubMed ID = 22461610
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGAGGTCGGTGAGTTTGTCTTC |
| Primer Seq. 3' |
aatctagaggtaccTAAGCCTCACAGAGCTGATCG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 GAGGTCGGTG AGTTTGTCTT CCTCACCGAC GACAGTTACA CCAAGGCGCA GGTGCTACGC
0061 ATGGAGCAGG TTATCTTGAA GATTCTCTCC TTCGATCTGT GCACACCGAC TGCTTACGTC
0121 TTCATCAACA CCTATGCTGT ACTTTGCGAC ATGCCTGAGA AGCTGAAGTA CATGACGCTG
0181 TATATTTCCG AGTTGTCGCA TCATGGAGGG AGAAACGTAC TTGCAATATT TGCCATCACT
0241 TATGTCATCC GCTTCAGTCG CACTGGCGCG TCACATTTGT GGGCATGGAG ATGTGGACGC
0301 CAAGGCTGGA GGAAGGATCA CGACTTACAA GCTGGAGGAC CTAAAAACGG TTGTGTTGCA
0361 TCTGTGTCAC ACCCACAAAA CGGCAAAGGA GCTCAACACG CAGGCCATGC GGGAAAAGTA
0421 CAATAGAGAC ACTTACAAGA AGGTGGCTAT GATGGAATCC GTTGAGATGA GCAAGGACGA
0481 CTTCGATCAG CTCTGTGAGG CTTA |
| in silico PCR Fragment |
0001 GAGGTCGGTG AGTTTGTCTT CCTCACCGAC GACAGTTACA CCAAGGCGCA GGTGCTACGC
0061 ATGGAGCAGG TTATCTTGAA GATTCTCTCC TTCGATCTGT GCACACCGAC TGCTTACGTC
0121 TTCATCAACA CCTATGCTGT ACTTTGCGAC ATGCCTGAGA AGCTGAAGTA CATGACGCTG
0181 TATATTTCCG AGTTGTCGC- TCATGGAGGG AGAAACGTAC TTGCAATATT TGCCATCACT
0241 TATGTCATCC GCTTCAGTCG CACTGGCGCG TCACATTT-T GGGCATGGAG ATGTGGACGC
0301 CAAGGCTGGA GGA--GATCA CGACTTACAA GCTGGAGGAC CTAAAAACGG TTGTGTTGCA
0361 TCTGTGTCAC ACCCACAAAA CGGCAAAGGA GCTCAACACG CAGGCCATGC GGGAAAAGTA
0421 CAATAGAGAC ACTTACAAGA AGGTGGCTAT GATGGAATCC GTTGAGATGA GCAAGGACGA
0481 CTTCGATCAG CTCTGTGAGG CTTA |
| Assemble Data |
5940R-1.IR_full 1 GAGGTCGGTGAGTTTGTCTTCCTCACCGACGACAGTTACACCAAGGCGCAGGTGCTACGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5940R-1.in silico 1 GAGGTCGGTGAGTTTGTCTTCCTCACCGACGACAGTTACACCAAGGCGCAGGTGCTACGC 60
5940R-1.IR_full 61 ATGGAGCAGGTTATCTTGAAGATTCTCTCCTTCGATCTGTGCACACCGACTGCTTACGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5940R-1.in silico 61 ATGGAGCAGGTTATCTTGAAGATTCTCTCCTTCGATCTGTGCACACCGACTGCTTACGTC 120
5940R-1.IR_full 121 TTCATCAACACCTATGCTGTACTTTGCGACATGCCTGAGAAGCTGAAGTACATGACGCTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5940R-1.in silico 121 TTCATCAACACCTATGCTGTACTTTGCGACATGCCTGAGAAGCTGAAGTACATGACGCTG 180
5940R-1.IR_full 181 TATATTTCCGAGTTGTCGCATCATGGAGGGAGAAACGTACTTGCAATATTTGCCATCACT 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
5940R-1.in silico 181 TATATTTCCGAGTTGTCGC-TCATGGAGGGAGAAACGTACTTGCAATATTTGCCATCACT 240
5940R-1.IR_full 241 TATGTCATCCGCTTCAGTCGCACTGGCGCGTCACATTTGTGGGCATGGAGATGTGGACGC 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
5940R-1.in silico 241 TATGTCATCCGCTTCAGTCGCACTGGCGCGTCACATTT-TGGGCATGGAGATGTGGACGC 300
5940R-1.IR_full 301 CAAGGCTGGAGGAAGGATCACGACTTACAAGCTGGAGGACCTAAAAACGGTTGTGTTGCA 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
5940R-1.in silico 301 CAAGGCTGGAGGA--GATCACGACTTACAAGCTGGAGGACCTAAAAACGGTTGTGTTGCA 360
5940R-1.IR_full 361 TCTGTGTCACACCCACAAAACGGCAAAGGAGCTCAACACGCAGGCCATGCGGGAAAAGTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5940R-1.in silico 361 TCTGTGTCACACCCACAAAACGGCAAAGGAGCTCAACACGCAGGCCATGCGGGAAAAGTA 420
5940R-1.IR_full 421 CAATAGAGACACTTACAAGAAGGTGGCTATGATGGAATCCGTTGAGATGAGCAAGGACGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5940R-1.in silico 421 CAATAGAGACACTTACAAGAAGGTGGCTATGATGGAATCCGTTGAGATGAGCAAGGACGA 480
5940R-1.IR_full 481 CTTCGATCAGCTCTGTGAGGCTTA 504
||||||||||||||||||||||||
5940R-1.in silico 481 CTTCGATCAGCTCTGTGAGGCTTA 504
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_079306.2 |
CG5940-RA, transcript variant A (CycA), mRNA |
| 100 |
482 |
0 |
0 |
0 |
NM_168483.1 |
CG5940-RB, transcript variant B (CycA), mRNA |
| 0 |
0 |
3 |
6 |
8 |
NM_134500.2 |
CG14224-RA (CG14224), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_136206.1 |
CG2617-RA (CG2617), mRNA |
| 0 |
0 |
1 |
3 |
12 |
NM_143367.2 |
CG10011-RA (CG10011), mRNA |
| 0 |
0 |
1 |
2 |
70 |
NM_144448.2 |
CG1915-RC, transcript variant C (sls), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_164696.1 |
CG31635-RA (CG31635), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_140411.1 |
CG17368-RA (CG17368), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_142664.1 |
CG15696-RA (CG15696), mRNA |
| 0 |
0 |
1 |
1 |
2 |
NM_141762.2 |
CG14692-RA (CG14692), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001043261.1 |
CG34157-RG, transcript variant G (Dys), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001043258.1 |
CG34157-RA, transcript variant A (Dys), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001043259.1 |
CG34157-RC, transcript variant C (Dys), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001043257.1 |
CG34157-RH, transcript variant H (Dys), mRNA |
| 0 |
0 |
0 |
6 |
3 |
NM_001043263.1 |
CG34157-RF, transcript variant F (Dys), mRNA |
| 0 |
0 |
0 |
6 |
2 |
NM_001043262.1 |
CG34157-RE, transcript variant E (Dys), mRNA |
| 0 |
0 |
0 |
6 |
2 |
NM_001043260.1 |
CG34157-RD, transcript variant D (Dys), mRNA |
| 0 |
0 |
0 |
6 |
2 |
NM_001043256.1 |
CG34157-RB, transcript variant B (Dys), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_168072.1 |
CG15010-RA, transcript variant A (ago), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_168073.1 |
CG15010-RB, transcript variant B (ago), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_079198.2 |
CG15010-RC, transcript variant C (ago), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_141746.3 |
CG14680-RA, transcript variant A (Cyp12e1), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_169344.2 |
CG14680-RB, transcript variant B (Cyp12e1), mRNA |
| 0 |
0 |
0 |
4 |
7 |
NM_142780.2 |
CG13855-RA (CG13855), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_137497.2 |
CG10924-RA (CG10924), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_143176.2 |
CG14354-RA (CG14354), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_168110.2 |
CG10671-RB, transcript variant B (CG10671), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_139687.2 |
CG10671-RA, transcript variant A (CG10671), mRNA |
| 0 |
0 |
0 |
3 |
7 |
NM_165820.1 |
CG13211-RB, transcript variant B (CG13211), mRNA |
| 0 |
0 |
0 |
3 |
7 |
NM_136824.2 |
CG13211-RA, transcript variant A (CG13211), mRNA |
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