NIG-Fly - Fly Stocks of National Institute of Genetics -

Notice:
Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.

NIG-RNAi Strains Detail

Request : Click the "Order" button to request for this stock

Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID 5826R-1

Symbol Prx5037 Full Name Peroxiredoxin 5037

CG No CG5826 Old CG No CG5826

Synonyms DPx-5037, CG5826, DPx5037, Prx5037

Accession No (Link to NCBI) NM_079663.2

Inserted Chr. ll

Insertional Mutation lethal

Phenotype induced by Act5C-GAL4 at 28 degrees viable

Map Viewer

Reference
[Please submit your publication] Kayashima Y, Yamakawa-Kobayashi K.
Involvement of Prx3, a Drosophila ortholog of the thiol-dependent peroxidase PRDX3, in age-dependent oxidative stress resistance.
Biomed Res (2012) 33(5) 319-22 [ PubMed ID = 23124252 ] [ RRC reference ]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgATGGGCAAGGCCATCCTGAGT

Primer Seq. 3'

aatctagaggtaccTAATGGAGTACTGGCGCAGGA

Predicted Fragment Size

IR fragment full Seq

0001 ATGGGCAAGG cCATCCTGAG TCAGCAGAAA CAGATTGCCG CCCGCCTCCT GCATCAAACC 
0061 GCTCCCCTTG CGGCAGTCCG CGTCCAGCAA CCTGCTCCCG ATTTCAAGGG TCTGGCTGTG 
0121 GTGGACAACA GCTTCCAGGA GGTTAAGCTG GAAGACTACA GGGGCAAGTA CCTGGTGCTC 
0181 TTCTTCTACC CACTGGATTT CACATTCGTT TGCCCCACTG AAATTGTTGC ATTTAGCGAG 
0241 AGGATCAAGG AGTTCCATGA CATTAATACC GAGGTTCTGG GCGTTTCCGT GGACTCCCAC 
0301 TTCAGCCATC TCACCTGGTG CAATGTCGAC CGCAAGAACG GCGGAGTGGG CCAGCTGAAG 
0361 TACCCGCTCC TCTCCGATTT GACCAAGAAG ATCTCTGCCG ACTACGATGT GTTGCTGGAC 
0421 AAGGAGGGCA TNCTCGCTGC GCGGCACCTT CATCATTGAC CCCAATGGNA TCCTGCGCCA 
0481 GTACTCCATT A

in silico PCR Fragment

0001 ATGGGCAAGG CCATCCTGAG TCAGCAGAAA CAGATTGCCG CCCGCCTCCT GCATCAAACC 
0061 GCTCCCCTTG CGGCAGTCCG CGTCCAGCAA CCTGCTCCCG ATTTCAAGGG TCTGGCTGTG 
0121 GTGGACAACA GCTTCCAGGA GGTTAAGCTG GAAGACTACA GGGGCAAGTA CCTGGTGCTC 
0181 TTCTTCTACC CACTAGATTT CACATTCGTT TGCCCCACCG AAATTGTTGC ATTTAGCGAG 
0241 AGGATCAAGG AGTTCCATGA CATTAACACC GAGGTTCTGG GCGTTTCCGT GGACTCCCAC 
0301 TTCAGCCATC TCACCTGGTG CAATGTCGAC CGCAAGAACG GCGGAGTGGG CCAGCTGAAG 
0361 TACCCGCTCC TCTCCGATTT GACCAAGAAG ATCTCTGCCG ACTACGATGT GTTGCTGGAC 
0421 AAGGAGGGCA T-CTCGCTGC GCGGCACCTT CATCATTGAC CCCAATGGCA TCCTGCGCCA 
0481 GTACTCCATT A

Assemble Data


5826R-1.IR_full       1   ATGGGCAAGGCCATCCTGAGTCAGCAGAAACAGATTGCCGCCCGCCTCCTGCATCAAACC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5826R-1.in silico     1   ATGGGCAAGGCCATCCTGAGTCAGCAGAAACAGATTGCCGCCCGCCTCCTGCATCAAACC 60


5826R-1.IR_full       61  GCTCCCCTTGCGGCAGTCCGCGTCCAGCAACCTGCTCCCGATTTCAAGGGTCTGGCTGTG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5826R-1.in silico     61  GCTCCCCTTGCGGCAGTCCGCGTCCAGCAACCTGCTCCCGATTTCAAGGGTCTGGCTGTG 120


5826R-1.IR_full       121 GTGGACAACAGCTTCCAGGAGGTTAAGCTGGAAGACTACAGGGGCAAGTACCTGGTGCTC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5826R-1.in silico     121 GTGGACAACAGCTTCCAGGAGGTTAAGCTGGAAGACTACAGGGGCAAGTACCTGGTGCTC 180


5826R-1.IR_full       181 TTCTTCTACCCACTGGATTTCACATTCGTTTGCCCCACTGAAATTGTTGCATTTAGCGAG 240
                          |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
5826R-1.in silico     181 TTCTTCTACCCACTAGATTTCACATTCGTTTGCCCCACCGAAATTGTTGCATTTAGCGAG 240


5826R-1.IR_full       241 AGGATCAAGGAGTTCCATGACATTAATACCGAGGTTCTGGGCGTTTCCGTGGACTCCCAC 300
                          |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
5826R-1.in silico     241 AGGATCAAGGAGTTCCATGACATTAACACCGAGGTTCTGGGCGTTTCCGTGGACTCCCAC 300


5826R-1.IR_full       301 TTCAGCCATCTCACCTGGTGCAATGTCGACCGCAAGAACGGCGGAGTGGGCCAGCTGAAG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5826R-1.in silico     301 TTCAGCCATCTCACCTGGTGCAATGTCGACCGCAAGAACGGCGGAGTGGGCCAGCTGAAG 360


5826R-1.IR_full       361 TACCCGCTCCTCTCCGATTTGACCAAGAAGATCTCTGCCGACTACGATGTGTTGCTGGAC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5826R-1.in silico     361 TACCCGCTCCTCTCCGATTTGACCAAGAAGATCTCTGCCGACTACGATGTGTTGCTGGAC 420


5826R-1.IR_full       421 AAGGAGGGCATNCTCGCTGCGCGGCACCTTCATCATTGACCCCAATGGNATCCTGCGCCA 480
                          ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
5826R-1.in silico     421 AAGGAGGGCAT-CTCGCTGCGCGGCACCTTCATCATTGACCCCAATGGCATCCTGCGCCA 480


5826R-1.IR_full       481 GTACTCCATTA 491
                          |||||||||||
5826R-1.in silico     481 GTACTCCATTA 491

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	472	0	0	0	NM_079663.2	CG5826-RA (Prx5037), mRNA
0	0	5	25	18	NM_167359.1	CG1633-RB, transcript variant B (Jafrac1), mRNA
0	0	5	25	18	NM_058162.2	CG1633-RA, transcript variant A (Jafrac1), mRNA
0	0	3	2	2	NM_058021.3	CG2331-RA, transcript variant A (TER94), mRNA
0	0	2	3	5	NM_057701.3	CG5820-RD, transcript variant D (Gp150), mRNA
0	0	2	3	5	NM_166529.1	CG5820-RC, transcript variant C (Gp150), mRNA
0	0	2	3	5	NM_166528.1	CG5820-RB, transcript variant B (Gp150), mRNA
0	0	2	3	5	NM_166527.1	CG5820-RA, transcript variant A (Gp150), mRNA
0	0	2	2	4	NM_142585.1	CG4733-RA (CG4733), mRNA
0	0	1	4	4	NM_136891.2	CG8877-RA (prp8), mRNA
0	0	1	3	5	NM_078816.2	CG7279-RA (Lip1), mRNA
0	0	1	3	5	NM_144347.2	CG12149-RA (c12.2), mRNA
0	0	1	2	6	NM_131948.1	CG3081-RA (CG3081), mRNA
0	0	1	2	6	NM_141854.2	CG14722-RA (CG14722), mRNA
0	0	0	11	12	NM_167971.1	CG1274-RB, transcript variant B (Jafrac2), mRNA
0	0	0	11	12	NM_080263.2	CG1274-RA, transcript variant A (Jafrac2), mRNA
0	0	0	9	5	NM_168629.2	CG32149-RC, transcript variant C (RhoGAP71E), mRNA
0	0	0	9	5	NM_140527.2	CG32149-RA, transcript variant A (RhoGAP71E), mRNA
0	0	0	9	5	NM_168630.1	CG32149-RB, transcript variant B (RhoGAP71E), mRNA
0	0	0	7	2	NM_170354.1	CG12428-RE, transcript variant E (CG12428), mRNA
0	0	0	7	2	NM_170353.1	CG12428-RD, transcript variant D (CG12428), mRNA
0	0	0	7	2	NM_170351.1	CG12428-RA, transcript variant A (CG12428), mRNA
0	0	0	7	2	NM_143326.2	CG12428-RC, transcript variant C (CG12428), mRNA
0	0	0	7	2	NM_170352.1	CG12428-RB, transcript variant B (CG12428), mRNA
0	0	0	5	9	NM_001043246.1	CG4154-RD, transcript variant D (Gyc88E), mRNA
0	0	0	5	9	NM_142167.2	CG4154-RC, transcript variant C (Gyc88E), mRNA
0	0	0	5	9	NM_169616.2	CG4154-RA, transcript variant A (Gyc88E), mRNA
0	0	0	5	5	NM_135453.1	CG13114-RA (CG13114), mRNA
0	0	0	5	3	NM_001043153.1	CG32434-RC, transcript variant C (siz), mRNA
0	0	0	5	3	NM_206407.1	CG32434-RA, transcript variant A (siz), mRNA

Back