National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5803R-3 
 Symbol Fas3  Full Name Fasciclin 3 
 CG No CG5803  Old CG No CG5803 
 Synonyms FasIII, FASIII, fasIII, Fas III, CG5803, Fas-3, FAS III, FAS3, fas III, Fas-III, fas-III, fascIII, Fas3, Fasciclin 3, Fasciclin III, Fasciclin, fasciclin III, Fascicilin III, fasciclin II, FasciclinIII, FsciclinIII, Fasiciclin III, fasciclinIII, Fascilin III 
 Accession No (Link to NCBI) NM_165250.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Fairchild MJ, Islam F, Tanentzapf G.
Identification of genetic networks that act in the somatic cells of the testis to mediate the developmental program of spermatogenesis.
PLoS Genet (2017) 13(9) e1007026 [ PubMed ID = 28957323 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgACACAGCGCTCCTCAACGAAG 
 Primer Seq. 3'
aatctagaggtaccCACGGAGGTCGATAGCTCCAC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ACACAGCGCT CCTCAACGAA GGCGATCGCA CCGAGCTGCT CTGTCGGTAC GGCAGATCCA 
0061 TCAACTACTG CCGCATTGAG ATTCCCGGCG AGCAGAAGGT ACTCAACCTG TCGCCGGAGT 
0121 GGAGCAAGAC ACCCGGATTC ACGTACTTCG GAGCGGGTCT CACGGCCGGA CAGTGCGGCG 
0181 TGAGCATCNG AGAGGGTCAA GGCCAGCAAC AATGGCCAGG TCAAGTGCAG TCTGGGCGTC 
0241 GAGGGAGAGG AGCTGTCGGG CACCATCGAC CTGGTCGTGG CACTGCGTCC CCAGCAGCCC 
0301 ATCATCGAGC TGTTGTCGCG GCCAAATCGC GAGGGCTACT TCAACGAGGG CACTGAATTC 
0361 AGGGcCCGCT GCAGCGTTCG CGATGGCCGT CCGCCGGCTA ACATCTCGTG GTACATCGAC 
0421 AACATGCCGG CCAACAAGCG CACCACTCCC CTGGAGGTCA TGTCCTCGAC CAACGACAAC 
0481 GTGGAGCTAT CGACCTCCGT G 
 in silico PCR Fragment
0001 ACACAGCGCT CCTCAACGAA GGCGATCGCA CCGAGCTGCT CTGTCGGTAC GGCAGATCCA 
0061 TCAACTACTG CCGCATTGAG ATTCCCGGCG AGCAGAAGGT ACTCAACCTG TCGCCGGAGT 
0121 GGAGCAAGAC ACCCGGATTC ACGTACTTCG GAGCGGGTCT CACGGCCGGA CAGTGCGGCG 
0181 TGAGCATC-G AGAGGGTCAA GGCCAGCAAC AATGGCCAGG TCAAGTGCAG TCTGGGCGTC 
0241 GAGGGAGAGG AGCTGTCGGG CACCATCGAC CTGGTCGTGG CACTGCGTCC CCAGCAGCCC 
0301 ATCATCGAGC TGTTGTCGCG GCCAAATCGC GAGGGCTACT TCAACGAGGG CACTGAATTC 
0361 AGGGCCCGCT GCAGCGTTCG CGATGGCCGT CCGCCGGCTA ACATCTCGTG GTACATCGAC 
0421 AACATGCCGG CCAACAAGCG CACCACTCCC CTGGAGGTCA TGTCCTCGAC CAACGACAAC 
0481 GTGGAGCTAT CGACCTCCGT G 
 Assemble Data

5803R-3.IR_full       1   ACACAGCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAGATCCA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5803R-3.in silico     1   ACACAGCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAGATCCA 60


5803R-3.IR_full       61  TCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCAACCTGTCGCCGGAGT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5803R-3.in silico     61  TCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCAACCTGTCGCCGGAGT 120


5803R-3.IR_full       121 GGAGCAAGACACCCGGATTCACGTACTTCGGAGCGGGTCTCACGGCCGGACAGTGCGGCG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5803R-3.in silico     121 GGAGCAAGACACCCGGATTCACGTACTTCGGAGCGGGTCTCACGGCCGGACAGTGCGGCG 180


5803R-3.IR_full       181 TGAGCATCNGAGAGGGTCAAGGCCAGCAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTC 240
                          |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
5803R-3.in silico     181 TGAGCATC-GAGAGGGTCAAGGCCAGCAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTC 240


5803R-3.IR_full       241 GAGGGAGAGGAGCTGTCGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5803R-3.in silico     241 GAGGGAGAGGAGCTGTCGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCC 300


5803R-3.IR_full       301 ATCATCGAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGAATTC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5803R-3.in silico     301 ATCATCGAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGAATTC 360


5803R-3.IR_full       361 AGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCTCGTGGTACATCGAC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5803R-3.in silico     361 AGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCTCGTGGTACATCGAC 420


5803R-3.IR_full       421 AACATGCCGGCCAACAAGCGCACCACTCCCCTGGAGGTCATGTCCTCGACCAACGACAAC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5803R-3.in silico     421 AACATGCCGGCCAACAAGCGCACCACTCCCCTGGAGGTCATGTCCTCGACCAACGACAAC 480


5803R-3.IR_full       481 GTGGAGCTATCGACCTCCGTG 501
                          |||||||||||||||||||||
5803R-3.in silico     481 GTGGAGCTATCGACCTCCGTG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_165250.1  CG5803-RA, transcript variant A (Fas3), mRNA 
100   482  NM_165249.1  CG5803-RB, transcript variant B (Fas3), mRNA 
0.2   NM_169254.1  CG11987-RA (tgo), mRNA 
0   NM_140031.1  CG4821-RA, transcript variant A (Tequila), mRNA 
0   NM_057543.3  CG9998-RA (U2af50), mRNA 
0   NM_143285.1  CG6051-RA (CG6051), mRNA 
0   NM_140997.2  CG11399-RB (CG11399), mRNA 
0   NM_134601.1  CG1718-RA (CG1718), mRNA 
0   NM_080427.2  CG1527-RA (RpS14b), mRNA 
0   NM_167137.1  CG1524-RA, transcript variant A (RpS14a), mRNA 
0   NM_080145.4  CG1524-RB, transcript variant B (RpS14a), mRNA 
0   NM_001042909.1  CG31619-RC, transcript variant C (CG31619), mRNA 
0   NM_165396.1  CG31619-RA, transcript variant A (CG31619), mRNA 
0   NM_165397.1  CG31619-RB, transcript variant B (CG31619), mRNA 
0   NM_079292.4  CG8107-RA (CalpB), mRNA 
0   NM_134555.1  CG15454-RA (CG15454), mRNA 
0   NM_137713.2  CG4266-RA (CG4266), mRNA 
0   NM_136408.2  CG3567-RA (Cyp6u1), mRNA 
0   10  NM_166126.1  CG18255-RC, transcript variant C (Strn-Mlck), mRNA 
0   NM_166130.1  CG18255-RE, transcript variant E (Strn-Mlck), mRNA 
0   NM_136954.2  CG8594-RA (CG8594), mRNA 
0   NM_142417.1  CG7794-RA (CG7794), mRNA 
0   NM_057878.3  CG5179-RA (Cdk9), mRNA 
0   11  NM_142218.1  CG18522-RA (CG18522), mRNA 
0   NM_132907.1  CG9784-RA (CG9784), mRNA 
0   NM_140189.1  CG7616-RA (CG7616), mRNA 
0   NM_137188.1  CG16801-RB, transcript variant B (CG16801), mRNA 
0   NM_166092.1  CG16801-RA, transcript variant A (CG16801), mRNA 
0   NM_140865.1  CG9295-RB (CG9295), mRNA 
0   NM_142986.2  CG5720-RA (CG5720), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
+- 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
++ 
DM
++ 
VM
 
VB
 
Dcompartment   Penetrance
     

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.