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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
5803R-3 |
Symbol |
Fas3 |
Full Name |
Fasciclin 3 |
CG No |
CG5803 |
Old CG No |
CG5803 |
Synonyms |
FasIII, FASIII, fasIII, Fas III, CG5803, Fas-3, FAS III, FAS3, fas III, Fas-III, fas-III, fascIII, Fas3, Fasciclin 3, Fasciclin III, Fasciclin, fasciclin III, Fascicilin III, fasciclin II, FasciclinIII, FsciclinIII, Fasiciclin III, fasciclinIII, Fascilin III |
Accession No (Link to NCBI) |
NM_165250.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Fairchild MJ, Islam F, Tanentzapf G. Identification of genetic networks that act in the somatic cells of the testis to mediate the developmental program of spermatogenesis. PLoS Genet (2017) 13(9) e1007026
[
PubMed ID = 28957323
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgACACAGCGCTCCTCAACGAAG |
Primer Seq. 3' |
aatctagaggtaccCACGGAGGTCGATAGCTCCAC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 ACACAGCGCT CCTCAACGAA GGCGATCGCA CCGAGCTGCT CTGTCGGTAC GGCAGATCCA
0061 TCAACTACTG CCGCATTGAG ATTCCCGGCG AGCAGAAGGT ACTCAACCTG TCGCCGGAGT
0121 GGAGCAAGAC ACCCGGATTC ACGTACTTCG GAGCGGGTCT CACGGCCGGA CAGTGCGGCG
0181 TGAGCATCNG AGAGGGTCAA GGCCAGCAAC AATGGCCAGG TCAAGTGCAG TCTGGGCGTC
0241 GAGGGAGAGG AGCTGTCGGG CACCATCGAC CTGGTCGTGG CACTGCGTCC CCAGCAGCCC
0301 ATCATCGAGC TGTTGTCGCG GCCAAATCGC GAGGGCTACT TCAACGAGGG CACTGAATTC
0361 AGGGcCCGCT GCAGCGTTCG CGATGGCCGT CCGCCGGCTA ACATCTCGTG GTACATCGAC
0421 AACATGCCGG CCAACAAGCG CACCACTCCC CTGGAGGTCA TGTCCTCGAC CAACGACAAC
0481 GTGGAGCTAT CGACCTCCGT G |
in silico PCR Fragment |
0001 ACACAGCGCT CCTCAACGAA GGCGATCGCA CCGAGCTGCT CTGTCGGTAC GGCAGATCCA
0061 TCAACTACTG CCGCATTGAG ATTCCCGGCG AGCAGAAGGT ACTCAACCTG TCGCCGGAGT
0121 GGAGCAAGAC ACCCGGATTC ACGTACTTCG GAGCGGGTCT CACGGCCGGA CAGTGCGGCG
0181 TGAGCATC-G AGAGGGTCAA GGCCAGCAAC AATGGCCAGG TCAAGTGCAG TCTGGGCGTC
0241 GAGGGAGAGG AGCTGTCGGG CACCATCGAC CTGGTCGTGG CACTGCGTCC CCAGCAGCCC
0301 ATCATCGAGC TGTTGTCGCG GCCAAATCGC GAGGGCTACT TCAACGAGGG CACTGAATTC
0361 AGGGCCCGCT GCAGCGTTCG CGATGGCCGT CCGCCGGCTA ACATCTCGTG GTACATCGAC
0421 AACATGCCGG CCAACAAGCG CACCACTCCC CTGGAGGTCA TGTCCTCGAC CAACGACAAC
0481 GTGGAGCTAT CGACCTCCGT G |
Assemble Data |
5803R-3.IR_full 1 ACACAGCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAGATCCA 60
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5803R-3.in silico 1 ACACAGCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAGATCCA 60
5803R-3.IR_full 61 TCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCAACCTGTCGCCGGAGT 120
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5803R-3.in silico 61 TCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCAACCTGTCGCCGGAGT 120
5803R-3.IR_full 121 GGAGCAAGACACCCGGATTCACGTACTTCGGAGCGGGTCTCACGGCCGGACAGTGCGGCG 180
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5803R-3.in silico 121 GGAGCAAGACACCCGGATTCACGTACTTCGGAGCGGGTCTCACGGCCGGACAGTGCGGCG 180
5803R-3.IR_full 181 TGAGCATCNGAGAGGGTCAAGGCCAGCAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTC 240
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5803R-3.in silico 181 TGAGCATC-GAGAGGGTCAAGGCCAGCAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTC 240
5803R-3.IR_full 241 GAGGGAGAGGAGCTGTCGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCC 300
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5803R-3.in silico 241 GAGGGAGAGGAGCTGTCGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCC 300
5803R-3.IR_full 301 ATCATCGAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGAATTC 360
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5803R-3.in silico 301 ATCATCGAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGAATTC 360
5803R-3.IR_full 361 AGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCTCGTGGTACATCGAC 420
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5803R-3.in silico 361 AGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCTCGTGGTACATCGAC 420
5803R-3.IR_full 421 AACATGCCGGCCAACAAGCGCACCACTCCCCTGGAGGTCATGTCCTCGACCAACGACAAC 480
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5803R-3.in silico 421 AACATGCCGGCCAACAAGCGCACCACTCCCCTGGAGGTCATGTCCTCGACCAACGACAAC 480
5803R-3.IR_full 481 GTGGAGCTATCGACCTCCGTG 501
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5803R-3.in silico 481 GTGGAGCTATCGACCTCCGTG 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
2 |
4 |
NM_165250.1 |
CG5803-RA, transcript variant A (Fas3), mRNA |
100 |
482 |
0 |
2 |
4 |
NM_165249.1 |
CG5803-RB, transcript variant B (Fas3), mRNA |
0.2 |
1 |
2 |
3 |
2 |
NM_169254.1 |
CG11987-RA (tgo), mRNA |
0 |
0 |
3 |
6 |
3 |
NM_140031.1 |
CG4821-RA, transcript variant A (Tequila), mRNA |
0 |
0 |
3 |
6 |
2 |
NM_057543.3 |
CG9998-RA (U2af50), mRNA |
0 |
0 |
3 |
5 |
4 |
NM_143285.1 |
CG6051-RA (CG6051), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_140997.2 |
CG11399-RB (CG11399), mRNA |
0 |
0 |
2 |
6 |
6 |
NM_134601.1 |
CG1718-RA (CG1718), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_080427.2 |
CG1527-RA (RpS14b), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_167137.1 |
CG1524-RA, transcript variant A (RpS14a), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_080145.4 |
CG1524-RB, transcript variant B (RpS14a), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_001042909.1 |
CG31619-RC, transcript variant C (CG31619), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_165396.1 |
CG31619-RA, transcript variant A (CG31619), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_165397.1 |
CG31619-RB, transcript variant B (CG31619), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_079292.4 |
CG8107-RA (CalpB), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_134555.1 |
CG15454-RA (CG15454), mRNA |
0 |
0 |
1 |
4 |
9 |
NM_137713.2 |
CG4266-RA (CG4266), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_136408.2 |
CG3567-RA (Cyp6u1), mRNA |
0 |
0 |
1 |
3 |
10 |
NM_166126.1 |
CG18255-RC, transcript variant C (Strn-Mlck), mRNA |
0 |
0 |
1 |
3 |
8 |
NM_166130.1 |
CG18255-RE, transcript variant E (Strn-Mlck), mRNA |
0 |
0 |
1 |
3 |
6 |
NM_136954.2 |
CG8594-RA (CG8594), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_142417.1 |
CG7794-RA (CG7794), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_057878.3 |
CG5179-RA (Cdk9), mRNA |
0 |
0 |
1 |
2 |
11 |
NM_142218.1 |
CG18522-RA (CG18522), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_132907.1 |
CG9784-RA (CG9784), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_140189.1 |
CG7616-RA (CG7616), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_137188.1 |
CG16801-RB, transcript variant B (CG16801), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_166092.1 |
CG16801-RA, transcript variant A (CG16801), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_140865.1 |
CG9295-RB (CG9295), mRNA |
0 |
0 |
0 |
8 |
4 |
NM_142986.2 |
CG5720-RA (CG5720), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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++ |
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VM |
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VB |
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