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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5802R-1 
 Symbol CG5802  Full Name CG5802 
 CG No CG5802  Old CG No CG5802 
 Synonyms unnamed, anon-EST:fe1H6, CG5802, anon-fast-evolving-1H6 
 Accession No (Link to NCBI)  
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Yamamoto-Hino M, Yoshida H, Ichimiya T, Sakamura S, Maeda M, Kimura Y, Sasaki N, Aoki-Kinoshita KF, Kinoshita-Toyoda A, Toyoda H, Ueda R, Nishihara S, Goto S.
Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing.
Genes Cells (2015) 20(6) 521-42 [ PubMed ID = 25940448 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGTACAGACAGATGGATCCGT 
 Primer Seq. 3'
aatctagaggtaccTCATCATCTGCTGACCGGAAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
 
 in silico PCR Fragment
 
 Assemble Data

5802R-1.IR full       1   GGTACAGACAGATGGATCCGTGGGAGAGCGCTTCACTTACGCCTTGGCCCTTGTTTGGGT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5802R-1.in silico     1   GGTACAGACAGATGGATCCGTGGGAGAGCGCTTCACTTACGCCTTGGCCCTTGTTTGGGT 60


5802R-1.IR full       61  GCAGTGCCTCTGCAACTATGTGTTTGCCAAGGTGCTGCTGACCATTAGGCCGCAAAAGGA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5802R-1.in silico     61  GCAGTGCCTCTGCAACTATGTGTTTGCCAAGGTGCTGCTGACCATTAGGCCGCAAAAGGA 120


5802R-1.IR full       121 GGACACCACCAACGCGGGCTCCTACGTGGCCTGTTCGCTGACCTATCTTCTGGCCATGGT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5802R-1.in silico     121 GGACACCACCAACGCGGGCTCCTACGTGGCCTGTTCGCTGACCTATCTTCTGGCCATGGT 180


5802R-1.IR full       181 CTCCACCAATATGGCCATGCGCTGGGTTCCCTATCCCACTGCTGTGGTAGGTAAATCCGC 240
                          |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
5802R-1.in silico     181 CTCCACCAATATGGCCATGCGCTGGGTTCCCTATCCCACTGCTGTGGTGGGTAAATCCGC 240


5802R-1.IR full       241 CAAGCCCATCCCCGTCATGATCCTGGGCGTGCTGATTGGTCGCAAATCCTACAGCTGGAC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5802R-1.in silico     241 CAAGCCCATCCCCGTCATGATCCTGGGCGTGCTGATTGGTCGCAAATCCTACAGCTGGAC 300


5802R-1.IR full       301 GCGCTATGCTTGCGTATTGACCATTGTCCTGGGAGTTATTCTCTTTATGTACAAGGAGGG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5802R-1.in silico     301 GCGCTATGCTTGCGTATTGACCATTGTCCTGGGAGTTATTCTCTTTATGTACAAGGAGGG 360


5802R-1.IR full       361 CAAGGTGTCCAATTTGCCGGCTGAGACCACGCTTCTCGGCGAGGTGCTGCTCTTCCTCAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5802R-1.in silico     361 CAAGGTGTCCAATTTGCCGGCTGAGACCACGCTTCTCGGCGAGGTGCTGCTCTTCCTCAG 420


5802R-1.IR full       421 TTTGTCAATGGACGGATTGACTGGAGCCGTTCAGGAGCGCATCCGAGCGGCCAGCGCGCC 480
                          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
5802R-1.in silico     421 TTTGTCAATGGACGGATTGACTGGAGCCGTTCAGGAACGCATCCGAGCGGCCAGCGCGCC 480


5802R-1.IR full       481 TTCCGGTCAGCAGATGATGAGG 502
                          ||||||||||||||||||||  
5802R-1.in silico     481 TTCCGGTCAGCAGATGATGA-- 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100  490  NM_142692.1  CG5802-RA (CG5802), mRNA 
NM_132322.2  ric8a CG15797-RA (ric8a), mRNA 
NM_165777.2  mitochondrial carnitine palmitoyltransferase I CG12891-RB, transcript variant B (CPTI), mRNA 
NM_078961.3  mitochondrial carnitine palmitoyltransferase I CG12891-RA, transcript variant A (CPTI), mRNA 
NM_165776.1  CG11777-RA (CG11777), mRNA 
NM_140446.2  CG3919-RA (CG3919), mRNA 
NM_135489.2  CG5846-RA (CG5846), mRNA 
NM_206564.1  CG5794-RE, transcript variant E (CG5794), mRNA 
NM_170158.1  CG5794-RB, transcript variant B (CG5794), mRNA 
NM_143018.2  CG5794-RD, transcript variant D (CG5794), mRNA 
NM_001032400.1  CG9850-RB, transcript variant B (CG9850), mRNA 
NM_137983.3  CG9850-RA, transcript variant A (CG9850), mRNA 
NM_169222.2  CG31462-RA (CG31462), mRNA 
NM_057920.3  Stromalin CG3423-RA (SA), mRNA 
NM_143453.1  CG7582-RA (CG7582), mRNA 
NM_001014606.1  CG1161-RB, transcript variant B (CG1161), mRNA 
NM_141271.2  CG1161-RA, transcript variant A (CG1161), mRNA 
NM_206496.1  CG14869-RB, transcript variant B (CG14869), mRNA 
NM_169659.2  CG14869-RA, transcript variant A (CG14869), mRNA 
NM_132230.2  slipper CG2272-RA (slpr), mRNA 
NM_079449.2  Adenylyl cyclase 76E CG7978-RA (Ac76E), mRNA 
NM_169704.1  CG32855-RA (CG32855), mRNA 
NM_168521.1  CG32108-RA (CG32108), mRNA 
10  NM_167595.3  Shaker CG12348-RE, transcript variant E (Sh), mRNA 
NM_167594.2  Shaker CG12348-RC, transcript variant C (Sh), mRNA 
NM_140127.1  CG8072-RA (CG8072), mRNA 
NM_169947.1  SNF4/AMP-activated protein kinase gamma subunit CG17299-RF, transcript variant F (SNF4Agamma), mRNA 
NM_165533.1  dappled CG1624-RA, transcript variant A (dpld), mRNA 
NM_165534.1  dappled CG1624-RB, transcript variant B (dpld), mRNA 
NM_080033.2  dappled CG1624-RC, transcript variant C (dpld), mRNA 

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