National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
Notice:

Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5786R-4 
 Symbol ppan  Full Name peter pan 
 CG No CG5786  Old CG No CG5786 
 Synonyms l(3)02231, l(3)j6B6, CG5786, ppan 
 Accession No (Link to NCBI) NM_057631.4 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgCGCACTCCTTCGTCATCCATC 
 Primer Seq. 3' 
aatctagaggtaccCCGCATCTCGACCAGCTTCGT 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 CGCACTCCTT CGTCATCCAT CGCGGCCTCG cCTGTCCGTA CATCACGGAC CTCACCCTGG 
0061 ACTTCCGCCG CATTATGGAG CCCTTTACGG CCAGCAATCT GCGCGAGNAG cGGATGAACC 
0121 GCATCAAGGA CTTTGTCAGC CTGAGCAGCT TCTTCCACGT CTCGCACATG GGCATCTTTA 
0181 ACAAGGCCTC CACGCAGCTG TCCTTCAAAG TGGTCCGCTT GCCGCGCGGT CCTTACCCTG 
0241 ACTTTCAAGG TTCACCAGTT CACCCTGGCC AGAGATGTGA TCTCGCTAAG CAAAAAGCAA 
0301 ATGATTGACA ACGATCACTT CAAACACGCT CCGCTGGTCA TCATGAACAA CTTCAGTGGC 
0361 GATGGCAAGC ACCTTAAGCT GATGGCCACC ACGTTCCAAA ACATGTTCCC CTCAATCAAC 
0421 TTGGCCACGG TTAACATCGG CACCATTCGT CGCTGCGTCC TGTTCTCCTA CAATCCGGAC 
0481 ACGAAGCTGG TCGAGATGNG G 
 in silico PCR Fragment 
0001 CGCACTCCTT CGTCATCCAT CGCGGCCTCG CCTGTCCGTA CATCACGGAC CTCACCCTGG 
0061 ACTTCCGCCG CATTATGGAG CCCTTTACGG CCAGCAATCT GCGCGAGAAG CGGATGAACC 
0121 GCATCAAGGA CTTTGTCAGC CTGAGCAGCT TCTTCCACGT CTCGCACATG GGCATCTTCA 
0181 ACAAGGCCTC CACGCAGCTG TCCTTCAAAG TGGTCCGCTT GCCGCGCGGT CCTT-CCCTG 
0241 ACTTTCAAGG TTCACCAGTT CACCCTGGCC AGAGATGTGA TCTCGCTAAG CAAAAAGCAG 
0301 ATGATTGACA ACGATCACTT CAAGCACGCT CCGCTCGTCA TCATGAACAA CTTCAGTGGC 
0361 GATGGCAAGC ACCTTAAGCT GATGGCCACC ACGTTCCAAA ACATGTTCCC CTCAATTAAC 
0421 TTGGCCACGG TTAATATCGG CACCATTCGT CGCTGCGTCC TGTTCTCCTA CAATCCGGAC 
0481 ACGAAGCTGG TCGAGATGCG G 
 Assemble Data 

5786R-4.IR_full       1   CGCACTCCTTCGTCATCCATCGCGGCCTCGCCTGTCCGTACATCACGGACCTCACCCTGG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5786R-4.in silico     1   CGCACTCCTTCGTCATCCATCGCGGCCTCGCCTGTCCGTACATCACGGACCTCACCCTGG 60


5786R-4.IR_full       61  ACTTCCGCCGCATTATGGAGCCCTTTACGGCCAGCAATCTGCGCGAGNAGCGGATGAACC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
5786R-4.in silico     61  ACTTCCGCCGCATTATGGAGCCCTTTACGGCCAGCAATCTGCGCGAGAAGCGGATGAACC 120


5786R-4.IR_full       121 GCATCAAGGACTTTGTCAGCCTGAGCAGCTTCTTCCACGTCTCGCACATGGGCATCTTTA 180
                          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
5786R-4.in silico     121 GCATCAAGGACTTTGTCAGCCTGAGCAGCTTCTTCCACGTCTCGCACATGGGCATCTTCA 180


5786R-4.IR_full       181 ACAAGGCCTCCACGCAGCTGTCCTTCAAAGTGGTCCGCTTGCCGCGCGGTCCTTACCCTG 240
                          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
5786R-4.in silico     181 ACAAGGCCTCCACGCAGCTGTCCTTCAAAGTGGTCCGCTTGCCGCGCGGTCCTT-CCCTG 240


5786R-4.IR_full       241 ACTTTCAAGGTTCACCAGTTCACCCTGGCCAGAGATGTGATCTCGCTAAGCAAAAAGCAA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
5786R-4.in silico     241 ACTTTCAAGGTTCACCAGTTCACCCTGGCCAGAGATGTGATCTCGCTAAGCAAAAAGCAG 300


5786R-4.IR_full       301 ATGATTGACAACGATCACTTCAAACACGCTCCGCTGGTCATCATGAACAACTTCAGTGGC 360
                          ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
5786R-4.in silico     301 ATGATTGACAACGATCACTTCAAGCACGCTCCGCTCGTCATCATGAACAACTTCAGTGGC 360


5786R-4.IR_full       361 GATGGCAAGCACCTTAAGCTGATGGCCACCACGTTCCAAAACATGTTCCCCTCAATCAAC 420
                          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
5786R-4.in silico     361 GATGGCAAGCACCTTAAGCTGATGGCCACCACGTTCCAAAACATGTTCCCCTCAATTAAC 420


5786R-4.IR_full       421 TTGGCCACGGTTAACATCGGCACCATTCGTCGCTGCGTCCTGTTCTCCTACAATCCGGAC 480
                          |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
5786R-4.in silico     421 TTGGCCACGGTTAATATCGGCACCATTCGTCGCTGCGTCCTGTTCTCCTACAATCCGGAC 480


5786R-4.IR_full       481 ACGAAGCTGGTCGAGATGNGG 501
                          |||||||||||||||||| ||
5786R-4.in silico     481 ACGAAGCTGGTCGAGATGCGG 501



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_057631.4  CG5786-RA (ppan), mRNA 
0.2   1  6  3  4  NM_140581.2  CG5222-RA (CG5222), mRNA 
0   0  4  4  3  NM_137928.2  CG12782-RA (CG12782), mRNA 
0   0  4  3  3  NM_175983.1  CG8222-RC, transcript variant C (Pvr), mRNA 
0   0  4  3  3  NM_205926.1  CG8222-RE, transcript variant E (Pvr), mRNA 
0   0  4  3  3  NM_205925.1  CG8222-RF, transcript variant F (Pvr), mRNA 
0   0  4  3  3  NM_078785.2  CG8222-RA, transcript variant A (Pvr), mRNA 
0   0  4  3  3  NM_164801.1  CG8222-RB, transcript variant B (Pvr), mRNA 
0   0  4  3  3  NM_205927.1  CG8222-RD, transcript variant D (Pvr), mRNA 
0   0  2  4  3  NM_142301.1  CG14889-RA (CG14889), mRNA 
0   0  2  4  3  NM_001043104.1  CG13586-RB, transcript variant B (itp), mRNA 
0   0  2  4  3  NM_138087.3  CG13586-RA, transcript variant A (itp), mRNA 
0   0  2  2  3  NM_079725.2  CG7050-RA (Nrx-1), mRNA 
0   0  1  5  4  NM_141058.2  CG5656-RA (CG5656), mRNA 
0   0  1  5  2  NM_140316.2  CG32104-RB (CG32104), mRNA 
0   0  1  4  10  NM_001032402.1  CG33957-RB, transcript variant B (cp309), mRNA 
0   0  1  4  6  NM_001032401.1  CG33957-RC, transcript variant C (cp309), mRNA 
0   0  1  4  5  NM_078791.2  CG9494-RA (Tsp29Fa), mRNA 
0   0  1  4  2  NM_205980.1  CG6214-RO, transcript variant O (MRP), mRNA 
0   0  1  4  2  NM_165020.2  CG6214-RA, transcript variant A (MRP), mRNA 
0   0  1  4  2  NM_205971.1  CG6214-RI, transcript variant I (MRP), mRNA 
0   0  1  3  4  NM_135206.1  CG13766-RA (CG13766), mRNA 
0   0  1  2  4  NM_142304.1  CG14903-RA (CG14903), mRNA 
0   0  1  2  4  NM_167981.1  CG11486-RE, transcript variant E (CG11486), mRNA 
0   0  1  2  4  NM_167982.1  CG11486-RA, transcript variant A (CG11486), mRNA 
0   0  1  2  4  NM_167984.1  CG11486-RD, transcript variant D (CG11486), mRNA 
0   0  1  2  4  NM_167980.1  CG11486-RC, transcript variant C (CG11486), mRNA 
0   0  1  2  4  NM_167983.1  CG11486-RB, transcript variant B (CG11486), mRNA 
0   0  1  2  4  NM_167975.1  CG11486-RJ, transcript variant J (CG11486), mRNA 
0   0  1  2  4  NM_167978.1  CG11486-RN, transcript variant N (CG11486), mRNA 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
 Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.