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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5432R-4 
 Symbol CG5432  Full Name CG5432 
 CG No CG5432  Old CG No CG5432 
 Synonyms CG5432 
 Accession No (Link to NCBI) NM_143219.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees male pupal lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCCGAACAAGGAGCTGCAGGA 
 Primer Seq. 3'
aatctagaggtaccACCGGGCCATGACATTAGCGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCCGAACAAG GAGCTGCAGG AGGAACTCAT CTGCATATCG AAGGCGTTGG TGGCTCCTGG 
0061 TAAGGGAATC CTGGCGGCCG ACGAGTCCAG TGCAGTGATG GGCAAGCGAT TTCAGTTGAT 
0121 CGGTGTGGAG AACACGGAGG AGAATCCGCC GGCTATACCG CCAAATGCTA TTCACGACCG 
0181 ATCCGAAGAT AGCGGAGAAT ATATCCGGCG TGATATTCTA CCATGAAACA CTGCATCAGC 
0241 GTACGGATGA CGGACTGCCA TTCGTAGAGG CCCTCAGAAA GAAGGGCATC CTGACGGGAA 
0301 TAAAGGTAGA CAAGCACTTT TCACCACTCT TCGGCTCCGA GGATGAGTTC ACCACCCAGG 
0361 GTCTGGATGA TCTAGCCAAT CGATGTGCAC AGTACAAGAA GGAGGGCTGC AGCTTTGCCA 
0421 AGTGGAGGTG CATCCTGAAG ATCACTAAGA ATACTCCTTC GCCGCAGGCC ATTTTGGAAA 
0481 ACGCTAATGT CATGGCCCGG T 
 in silico PCR Fragment
0001 CCCGAACAAG GAGCTGCAGG AAGAACTCAT CTGCATATCG AAGGCGTTGG TGGCTCCTGG 
0061 TAAGGGAATC CTGGCGGCCG ACGAGTCCAG TGCAGTGATG GGCAAGCGAT TTCAGTTGAT 
0121 CGGTGTGGAG AACACGGAGG AGAAT-CGCC GGCTATACCG CCAAATGCTA TTCACGACCG 
0181 ATCCGAAGAT AGCGGAGAAT ATATCCGGCG TGATATTCTA CCATGAAACA CTGCATCAGC 
0241 GTACGGATGA CGGACTGCCA TTCGTAGAGG CCCTCAGAAA GAAGGGCATC CTGACGGGAA 
0301 TAAAGGTAGA CAAGCACTTT TCACCACTCT TCGGCTCCGA GGATGAGTTC ACCACCCAGG 
0361 GTCTGGATGA TCTAGCCAAT CGATGTGCAC AGTACAAGAA GGAGGGCTGC AGCTTTGCCA 
0421 AGTGGAGGTG CATCCTGAAG ATCACTAAGA ATACTCCTTC GCCGCAGGCC ATTTTGGAAA 
0481 ACGCTAATGT CATGGCCCGG T 
 Assemble Data

5432R-4.IR_full       1   CCCGAACAAGGAGCTGCAGGAGGAACTCATCTGCATATCGAAGGCGTTGGTGGCTCCTGG 60
                          ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
5432R-4.in silico     1   CCCGAACAAGGAGCTGCAGGAAGAACTCATCTGCATATCGAAGGCGTTGGTGGCTCCTGG 60


5432R-4.IR_full       61  TAAGGGAATCCTGGCGGCCGACGAGTCCAGTGCAGTGATGGGCAAGCGATTTCAGTTGAT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5432R-4.in silico     61  TAAGGGAATCCTGGCGGCCGACGAGTCCAGTGCAGTGATGGGCAAGCGATTTCAGTTGAT 120


5432R-4.IR_full       121 CGGTGTGGAGAACACGGAGGAGAATCCGCCGGCTATACCGCCAAATGCTATTCACGACCG 180
                          ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
5432R-4.in silico     121 CGGTGTGGAGAACACGGAGGAGAAT-CGCCGGCTATACCGCCAAATGCTATTCACGACCG 180


5432R-4.IR_full       181 ATCCGAAGATAGCGGAGAATATATCCGGCGTGATATTCTACCATGAAACACTGCATCAGC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5432R-4.in silico     181 ATCCGAAGATAGCGGAGAATATATCCGGCGTGATATTCTACCATGAAACACTGCATCAGC 240


5432R-4.IR_full       241 GTACGGATGACGGACTGCCATTCGTAGAGGCCCTCAGAAAGAAGGGCATCCTGACGGGAA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5432R-4.in silico     241 GTACGGATGACGGACTGCCATTCGTAGAGGCCCTCAGAAAGAAGGGCATCCTGACGGGAA 300


5432R-4.IR_full       301 TAAAGGTAGACAAGCACTTTTCACCACTCTTCGGCTCCGAGGATGAGTTCACCACCCAGG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5432R-4.in silico     301 TAAAGGTAGACAAGCACTTTTCACCACTCTTCGGCTCCGAGGATGAGTTCACCACCCAGG 360


5432R-4.IR_full       361 GTCTGGATGATCTAGCCAATCGATGTGCACAGTACAAGAAGGAGGGCTGCAGCTTTGCCA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5432R-4.in silico     361 GTCTGGATGATCTAGCCAATCGATGTGCACAGTACAAGAAGGAGGGCTGCAGCTTTGCCA 420


5432R-4.IR_full       421 AGTGGAGGTGCATCCTGAAGATCACTAAGAATACTCCTTCGCCGCAGGCCATTTTGGAAA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5432R-4.in silico     421 AGTGGAGGTGCATCCTGAAGATCACTAAGAATACTCCTTCGCCGCAGGCCATTTTGGAAA 480


5432R-4.IR_full       481 ACGCTAATGTCATGGCCCGGT 501
                          |||||||||||||||||||||
5432R-4.in silico     481 ACGCTAATGTCATGGCCCGGT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_143219.1  CG5432-RA (CG5432), mRNA 
0.82   13  45  53  NM_170262.1  CG6058-RB, transcript variant B (Ald), mRNA 
0.82   13  45  53  NM_170263.1  CG6058-RC, transcript variant C (Ald), mRNA 
0.82   13  45  53  NM_170261.1  CG6058-RF, transcript variant F (Ald), mRNA 
0.82   13  45  53  NM_170264.1  CG6058-RD, transcript variant D (Ald), mRNA 
0.82   13  45  53  NM_206577.1  CG6058-RH, transcript variant H (Ald), mRNA 
0.82   13  45  53  NM_170266.2  CG6058-RG, transcript variant G (Ald), mRNA 
0.82   13  45  53  NM_170265.2  CG6058-RA, transcript variant A (Ald), mRNA 
0.82   13  45  53  NM_079791.3  CG6058-RE, transcript variant E (Ald), mRNA 
0   NM_135391.2  CG13095-RA (CG13095), mRNA 
0   NM_057579.3  CG12759-RA (Dbp45A), mRNA 
0   NM_169450.1  CG14741-RA (CG14741), mRNA 
0   NM_141158.3  CG7369-RA (CG7369), mRNA 
0   NM_138188.1  CG1231-RA (CG1231), mRNA 
0   NM_001043147.1  CG32178-RB, transcript variant B (Msi), mRNA 
0   NM_001043148.1  CG32178-RC, transcript variant C (Msi), mRNA 
0   NM_080281.3  CG32178-RA, transcript variant A (Msi), mRNA 
0   NM_141731.1  CG3996-RA (CG3996), mRNA 
0   NM_169192.2  CG3066-RC, transcript variant C (Sp7), mRNA 
0   NM_141477.2  CG3066-RA, transcript variant A (Sp7), mRNA 
0   NM_206457.1  CG3066-RD, transcript variant D (Sp7), mRNA 
0   NR_002020.1  CR32865, miscRNA 
0   12  NM_135344.2  CG8486-RA, transcript variant A (CG8486), mRNA 
0   12  NM_164795.2  CG8486-RB, transcript variant B (CG8486), mRNA 
0   12  NM_001042881.1  CG8486-RC, transcript variant C (CG8486), mRNA 
0   NM_001038962.1  CG33977-RA (CG33977), mRNA 
0   NM_079230.2  CG32386-RA (corn), mRNA 
0   NM_136037.2  CG10275-RA (CG10275), mRNA 
0   NM_167024.1  CG6899-RB, transcript variant B (Ptp4E), mRNA 
0   NM_080337.2  CG6899-RA, transcript variant A (Ptp4E), mRNA 

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