National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5389R-1 
 Symbol CG5389  Full Name CG5389 
 CG No CG5389  Old CG No CG5389 
 Synonyms CG5389 
 Accession No (Link to NCBI) NM_140579.1 
 Inserted Chr. ll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGTGTTTCCCCGCTACCTTCA 
 Primer Seq. 3'
aatctagaggtaccCCTCACCGCGATCGTCAATGG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GNTGTTTCCC CGCTACCTTC ATGCCTCCCT GTCCCTTTGG GATGACAAGG ATAAGAAAAA 
0061 GTCGGGCGAT GAGTGCGAGC CCGAGCCGCA GGAAGTCTGC AAGACGGACG CGGAACTGGT 
0121 TAAGAAGAAG GATGAAGCCG AGGATGAGTG TGAGGAAAAG AAGTCCGACG GCGGAGGCAA 
0181 GAAGCTGGAG AGCAAGGGTC GCAAGGGTGT CATCCATGCT GTCATCGGTC CCGTCATCGA 
0241 TGTCTACTTC GAGGAGGAGG TTCCGGAGGT GCTCAACGCG CTCCAGGTGC AGGATGCTCC 
0301 CATTGCTAAC CTAGTGCTGG AGGTATTCCA CCATCTGGGC AACAATATCG TCCGTTGCGT 
0361 GGCCATGGAT TCCACCGAAG GaNTGCGTCG TGGTCAGNCG GTCCTCGATA CCGGCTATCC 
0421 CATCCGTGTG GCGGTgGGCA AGGCCGTTTT GGGACGCATC CTCAACGTGG TGGGCGATCC 
0481 CATTGACGAT CGCGGTGAGG  
 in silico PCR Fragment
0001 GGTGTTTCCC CGCTACCTTC ATGCCTCCCT GTCCCTTTGG GATGACAAGG ATAAGAAAAA 
0061 GTCGGGCGAT GAGTGCGAGC CCGAGCCGCA GGAAGTCTGC AAGACGGACG CGGAACTGGT 
0121 TAAGAAGAAG GATGAAGCCG AGGATGAGTG TGAGGAAAAG AAGTCCGACG GCGGAGGCAA 
0181 GAAGCTGGAG AGCAAGGGTC GCAAGGGTGT CATCCATGCT GTCATCGGTC CCGTCATCGA 
0241 TGTCTACTTC GAGGAGGAGG TTCCGGAGGT GCTCAACGCG CTCCAGGTGC AGGATGCTCC 
0301 CATTGCTAAC CTAGTGCTGG AGGTATTCCA CCATCTGGGC AACAATATCG TCCGTTGCGT 
0361 GGCCATGGAT TCCACCGAAG GACTGCGTCG TGGTCAGCCG GTCCTCGATA CCGGCTATCC 
0421 CATCCGTGTG GCGGTGGGCA AGGCCGTTTT GGGACGCATC CTCAACGTGG TGGGCGATCC 
0481 CATTGACGAT CGCGGTGAGG  
 Assemble Data

5389R-1.IR_full       1   GNTGTTTCCCCGCTACCTTCATGCCTCCCTGTCCCTTTGGGATGACAAGGATAAGAAAAA 60
                          | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5389R-1.in silico     1   GGTGTTTCCCCGCTACCTTCATGCCTCCCTGTCCCTTTGGGATGACAAGGATAAGAAAAA 60


5389R-1.IR_full       61  GTCGGGCGATGAGTGCGAGCCCGAGCCGCAGGAAGTCTGCAAGACGGACGCGGAACTGGT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5389R-1.in silico     61  GTCGGGCGATGAGTGCGAGCCCGAGCCGCAGGAAGTCTGCAAGACGGACGCGGAACTGGT 120


5389R-1.IR_full       121 TAAGAAGAAGGATGAAGCCGAGGATGAGTGTGAGGAAAAGAAGTCCGACGGCGGAGGCAA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5389R-1.in silico     121 TAAGAAGAAGGATGAAGCCGAGGATGAGTGTGAGGAAAAGAAGTCCGACGGCGGAGGCAA 180


5389R-1.IR_full       181 GAAGCTGGAGAGCAAGGGTCGCAAGGGTGTCATCCATGCTGTCATCGGTCCCGTCATCGA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5389R-1.in silico     181 GAAGCTGGAGAGCAAGGGTCGCAAGGGTGTCATCCATGCTGTCATCGGTCCCGTCATCGA 240


5389R-1.IR_full       241 TGTCTACTTCGAGGAGGAGGTTCCGGAGGTGCTCAACGCGCTCCAGGTGCAGGATGCTCC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5389R-1.in silico     241 TGTCTACTTCGAGGAGGAGGTTCCGGAGGTGCTCAACGCGCTCCAGGTGCAGGATGCTCC 300


5389R-1.IR_full       301 CATTGCTAACCTAGTGCTGGAGGTATTCCACCATCTGGGCAACAATATCGTCCGTTGCGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5389R-1.in silico     301 CATTGCTAACCTAGTGCTGGAGGTATTCCACCATCTGGGCAACAATATCGTCCGTTGCGT 360


5389R-1.IR_full       361 GGCCATGGATTCCACCGAAGGANTGCGTCGTGGTCAGNCGGTCCTCGATACCGGCTATCC 420
                          |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
5389R-1.in silico     361 GGCCATGGATTCCACCGAAGGACTGCGTCGTGGTCAGCCGGTCCTCGATACCGGCTATCC 420


5389R-1.IR_full       421 CATCCGTGTGGCGGTGGGCAAGGCCGTTTTGGGACGCATCCTCAACGTGGTGGGCGATCC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5389R-1.in silico     421 CATCCGTGTGGCGGTGGGCAAGGCCGTTTTGGGACGCATCCTCAACGTGGTGGGCGATCC 480


5389R-1.IR_full       481 CATTGACGATCGCGGTGAGG 500
                          ||||||||||||||||||||
5389R-1.in silico     481 CATTGACGATCGCGGTGAGG 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_140579.1  CG5389-RA (CG5389), mRNA 
0.2   NM_165301.1  CG10026-RA, transcript variant A (CG10026), mRNA 
0.2   NM_165302.2  CG10026-RC, transcript variant C (CG10026), mRNA 
0.2   NM_136124.2  CG10026-RB, transcript variant B (CG10026), mRNA 
0   NM_165696.1  CG1648-RB, transcript variant B (CG1648), mRNA 
0   NM_136674.2  CG1648-RA, transcript variant A (CG1648), mRNA 
0   NM_140812.2  CG3902-RA (CG3902), mRNA 
0   NM_206540.1  CG33334-RA (CG33334), mRNA 
0   NM_164737.1  CG31630-RA (CG31630), mRNA 
0   NM_167121.1  CG9650-RC, transcript variant C (CG9650), mRNA 
0   NM_132157.1  CG9650-RB, transcript variant B (CG9650), mRNA 
0   NM_167123.2  CG9650-RA, transcript variant A (CG9650), mRNA 
0   NM_137251.2  CG8443-RA (CG8443), mRNA 
0   NM_136625.2  CG8027-RA (CG8027), mRNA 
0   12  40  NM_135002.1  CG15635-RA (CG15635), mRNA 
0   NM_168647.1  CG32156-RA, transcript variant A (Mbs), mRNA 
0   NM_168648.1  CG32156-RB, transcript variant B (Mbs), mRNA 
0   NM_168646.1  CG32156-RC, transcript variant C (Mbs), mRNA 
0   NM_132683.1  CG12177-RA (CG12177), mRNA 
0   NM_136935.1  CG8834-RA (CG8834), mRNA 
0   NM_132878.1  CG9216-RA, transcript variant A (CG9216), mRNA 
0   NM_167485.1  CG9216-RC, transcript variant C (CG9216), mRNA 
0   NM_167486.1  CG9216-RB, transcript variant B (CG9216), mRNA 
0   NM_057225.3  CG10653-RA (hk), mRNA 
0   NM_141680.1  CG16908-RA (CG16908), mRNA 
0   NM_165411.1  CG6448-RA, transcript variant A (CG6448), mRNA 
0   NM_136290.2  CG6448-RB, transcript variant B (CG6448), mRNA 
0   NM_080044.2  CG13906-RA (nerfin-1), mRNA 
0   NM_079693.2  CG4173-RA (Sep2), mRNA 
0   NM_135786.1  CG6108-RA (CG6108), mRNA 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.