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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
5361R-1 |
Symbol |
CG5361 |
Full Name |
CG5361 |
CG No |
CG5361 |
Old CG No |
CG5361 |
Synonyms |
CG5361 |
Accession No (Link to NCBI) |
NM_141721.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
male lethal, female semi-lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD. Zyxin links fat signaling to the hippo pathway. PLoS Biol (2011) 9(6) e1000624
[
PubMed ID = 21666802
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCGGCTGAAATCAACCCAGGTG |
Primer Seq. 3' |
aatctagaggtaccATCGGGCCTTGCGTTGCATTA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CGGCTGAAAT CAACCCAGGT GTTCCTGGTG GCTGGAACAT GTTTGATAAC GGTAATGGTT
0061 ACTTTGCTCT GCATTGGCTT TATGACCAGG TACGAGGTGG AGAACGATGT GGCCAACGTG
0121 GCGGATGTGG ATTATTGGAA GGATAAGGTG GCGACCTCCC AGAAAATCTG GTACGATAAG
0181 GGCATTGATG AGCTGAACGA GGCACTAAGG CCACAAGATT TGACTTATCC AAAAAACGTG
0241 AGGATATTTG TGATACAGGG AATCGATGGA CGAGACTTGG CTGCTTTTCG ATTTCCAACC
0301 AGCGATGCTA GTCGCGGCAA TACCAACTTT ATTTGGGATC GGTTTCCCCA CTTGGCTCGC
0361 TTGAAAAACA GTTGCAGTCA GCAGTTTCCC TGTCAAGTGG CCAGTGTTTC CCGAGCTCTT
0421 TGGTTGGGAA TTCCTTTGGA TAAAGTCCCA GAAAATCAGC AGGATTGCGG AAGGTTATTT
0481 AATGCAACNC AAGGCCCGAT |
in silico PCR Fragment |
0001 CGGCTGAAAT CAACCCAGGT GTTCCTGGTG GCTGGAACAT GTTTGATAAC GGTAATGGTT
0061 ACTTTGCTCT GCATTGGCTT TATGACCAGG TACGAGGTGG AGAACGATGT GGCCAACGTG
0121 GCGGATGTGG ATTATTGGAA GGATAAGGTG GCGACCTCCC AGAAAATCTG GTACGATAAG
0181 GGCATTGATG AGCTGAACGA GGCACTAAGG CCACAAGATT TGACTTATCC AAAAAACGTG
0241 AGGATATTTG TGATACAGGG AATCGATGGA CGAGACTGGG CTGCTTTTCG ATTTCCAACC
0301 AGCGATGCTA GTCGCGGCAA TACCAACTTT ATTTGGGATC GGTTTCCCCA CTTGGCTCGC
0361 TTGAAAAACA GTTGCAGTCA GCAGTTTCCC TGTCAAGTGG CCAGTGTTTC CCGAGCTCTT
0421 TGGTTGGGAA TTCCTTTGGA TAAAGTCCCA GACAATCAGC AGGATTGCGG AAGGTTATTT
0481 AATGCAACGC AAGGCCCGAT |
Assemble Data |
5361R-1.IR_full 1 CGGCTGAAATCAACCCAGGTGTTCCTGGTGGCTGGAACATGTTTGATAACGGTAATGGTT 60
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5361R-1.in silico 1 CGGCTGAAATCAACCCAGGTGTTCCTGGTGGCTGGAACATGTTTGATAACGGTAATGGTT 60
5361R-1.IR_full 61 ACTTTGCTCTGCATTGGCTTTATGACCAGGTACGAGGTGGAGAACGATGTGGCCAACGTG 120
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5361R-1.in silico 61 ACTTTGCTCTGCATTGGCTTTATGACCAGGTACGAGGTGGAGAACGATGTGGCCAACGTG 120
5361R-1.IR_full 121 GCGGATGTGGATTATTGGAAGGATAAGGTGGCGACCTCCCAGAAAATCTGGTACGATAAG 180
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5361R-1.in silico 121 GCGGATGTGGATTATTGGAAGGATAAGGTGGCGACCTCCCAGAAAATCTGGTACGATAAG 180
5361R-1.IR_full 181 GGCATTGATGAGCTGAACGAGGCACTAAGGCCACAAGATTTGACTTATCCAAAAAACGTG 240
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5361R-1.in silico 181 GGCATTGATGAGCTGAACGAGGCACTAAGGCCACAAGATTTGACTTATCCAAAAAACGTG 240
5361R-1.IR_full 241 AGGATATTTGTGATACAGGGAATCGATGGACGAGACTTGGCTGCTTTTCGATTTCCAACC 300
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5361R-1.in silico 241 AGGATATTTGTGATACAGGGAATCGATGGACGAGACTGGGCTGCTTTTCGATTTCCAACC 300
5361R-1.IR_full 301 AGCGATGCTAGTCGCGGCAATACCAACTTTATTTGGGATCGGTTTCCCCACTTGGCTCGC 360
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5361R-1.in silico 301 AGCGATGCTAGTCGCGGCAATACCAACTTTATTTGGGATCGGTTTCCCCACTTGGCTCGC 360
5361R-1.IR_full 361 TTGAAAAACAGTTGCAGTCAGCAGTTTCCCTGTCAAGTGGCCAGTGTTTCCCGAGCTCTT 420
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5361R-1.in silico 361 TTGAAAAACAGTTGCAGTCAGCAGTTTCCCTGTCAAGTGGCCAGTGTTTCCCGAGCTCTT 420
5361R-1.IR_full 421 TGGTTGGGAATTCCTTTGGATAAAGTCCCAGAAAATCAGCAGGATTGCGGAAGGTTATTT 480
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5361R-1.in silico 421 TGGTTGGGAATTCCTTTGGATAAAGTCCCAGACAATCAGCAGGATTGCGGAAGGTTATTT 480
5361R-1.IR_full 481 AATGCAACNCAAGGCCCGAT 500
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5361R-1.in silico 481 AATGCAACGCAAGGCCCGAT 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_141721.1 |
CG5361-RA (CG5361), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_141757.1 |
CG14685-RB, transcript variant B (Cap-H2), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_169358.1 |
CG14685-RA, transcript variant A (Cap-H2), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_169359.1 |
CG14685-RC, transcript variant C (Cap-H2), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_170468.1 |
CG31029-RA (CG31029), mRNA |
0 |
0 |
2 |
2 |
7 |
NM_137537.2 |
CG15099-RA (CG15099), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_134545.2 |
CG15459-RA (CG15459), mRNA |
0 |
0 |
1 |
7 |
6 |
NM_130545.2 |
CG11411-RA (fs(1)N), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_165093.1 |
CG15279-RB, transcript variant B (CG15279), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_135882.2 |
CG15279-RA, transcript variant A (CG15279), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_001014484.1 |
CG15279-RC, transcript variant C (CG15279), mRNA |
0 |
0 |
1 |
3 |
7 |
NM_142221.1 |
CG18516-RA (CG18516), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_133003.2 |
CG32555-RB, transcript variant B (RhoGAPp190), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_167573.1 |
CG32555-RC, transcript variant C (RhoGAPp190), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_167572.1 |
CG32555-RA, transcript variant A (RhoGAPp190), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_136913.2 |
CG17739-RA (CG17739), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_140737.1 |
CG6298-RA (Jon74E), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_001043218.1 |
CG33097-RB, transcript variant B (CG33097), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_176408.1 |
CG33097-RA, transcript variant A (CG33097), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_130658.2 |
CG10260-RB (CG10260), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_079106.2 |
CG4817-RA (Ssrp), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_079738.2 |
CG6768-RA (DNApol-epsilon), mRNA |
0 |
0 |
0 |
7 |
3 |
NM_139712.1 |
CG13285-RA (CG13285), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_078895.3 |
CG2981-RA (TpnC41C), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_142001.1 |
CG17319-RA (CG17319), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_143806.2 |
CG8325-RA (l(2)k14710), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_080330.2 |
CG3620-RA, transcript variant A (norpA), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_001014721.1 |
CG3620-RC, transcript variant C (norpA), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_167008.1 |
CG3620-RB, transcript variant B (norpA), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_001014720.1 |
CG3620-RD, transcript variant D (norpA), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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+ |
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DM |
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+ |
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VM |
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+ |
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VB |
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Dcompartment |
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Penetrance |
+ |
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