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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5361R-1 
 Symbol CG5361  Full Name CG5361 
 CG No CG5361  Old CG No CG5361 
 Synonyms CG5361 
 Accession No (Link to NCBI) NM_141721.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees male lethal, female semi-lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGGCTGAAATCAACCCAGGTG 
 Primer Seq. 3'
aatctagaggtaccATCGGGCCTTGCGTTGCATTA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGGCTGAAAT CAACCCAGGT GTTCCTGGTG GCTGGAACAT GTTTGATAAC GGTAATGGTT 
0061 ACTTTGCTCT GCATTGGCTT TATGACCAGG TACGAGGTGG AGAACGATGT GGCCAACGTG 
0121 GCGGATGTGG ATTATTGGAA GGATAAGGTG GCGACCTCCC AGAAAATCTG GTACGATAAG 
0181 GGCATTGATG AGCTGAACGA GGCACTAAGG CCACAAGATT TGACTTATCC AAAAAACGTG 
0241 AGGATATTTG TGATACAGGG AATCGATGGA CGAGACTTGG CTGCTTTTCG ATTTCCAACC 
0301 AGCGATGCTA GTCGCGGCAA TACCAACTTT ATTTGGGATC GGTTTCCCCA CTTGGCTCGC 
0361 TTGAAAAACA GTTGCAGTCA GCAGTTTCCC TGTCAAGTGG CCAGTGTTTC CCGAGCTCTT 
0421 TGGTTGGGAA TTCCTTTGGA TAAAGTCCCA GAAAATCAGC AGGATTGCGG AAGGTTATTT 
0481 AATGCAACNC AAGGCCCGAT  
 in silico PCR Fragment
0001 CGGCTGAAAT CAACCCAGGT GTTCCTGGTG GCTGGAACAT GTTTGATAAC GGTAATGGTT 
0061 ACTTTGCTCT GCATTGGCTT TATGACCAGG TACGAGGTGG AGAACGATGT GGCCAACGTG 
0121 GCGGATGTGG ATTATTGGAA GGATAAGGTG GCGACCTCCC AGAAAATCTG GTACGATAAG 
0181 GGCATTGATG AGCTGAACGA GGCACTAAGG CCACAAGATT TGACTTATCC AAAAAACGTG 
0241 AGGATATTTG TGATACAGGG AATCGATGGA CGAGACTGGG CTGCTTTTCG ATTTCCAACC 
0301 AGCGATGCTA GTCGCGGCAA TACCAACTTT ATTTGGGATC GGTTTCCCCA CTTGGCTCGC 
0361 TTGAAAAACA GTTGCAGTCA GCAGTTTCCC TGTCAAGTGG CCAGTGTTTC CCGAGCTCTT 
0421 TGGTTGGGAA TTCCTTTGGA TAAAGTCCCA GACAATCAGC AGGATTGCGG AAGGTTATTT 
0481 AATGCAACGC AAGGCCCGAT  
 Assemble Data

5361R-1.IR_full       1   CGGCTGAAATCAACCCAGGTGTTCCTGGTGGCTGGAACATGTTTGATAACGGTAATGGTT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5361R-1.in silico     1   CGGCTGAAATCAACCCAGGTGTTCCTGGTGGCTGGAACATGTTTGATAACGGTAATGGTT 60


5361R-1.IR_full       61  ACTTTGCTCTGCATTGGCTTTATGACCAGGTACGAGGTGGAGAACGATGTGGCCAACGTG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5361R-1.in silico     61  ACTTTGCTCTGCATTGGCTTTATGACCAGGTACGAGGTGGAGAACGATGTGGCCAACGTG 120


5361R-1.IR_full       121 GCGGATGTGGATTATTGGAAGGATAAGGTGGCGACCTCCCAGAAAATCTGGTACGATAAG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5361R-1.in silico     121 GCGGATGTGGATTATTGGAAGGATAAGGTGGCGACCTCCCAGAAAATCTGGTACGATAAG 180


5361R-1.IR_full       181 GGCATTGATGAGCTGAACGAGGCACTAAGGCCACAAGATTTGACTTATCCAAAAAACGTG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5361R-1.in silico     181 GGCATTGATGAGCTGAACGAGGCACTAAGGCCACAAGATTTGACTTATCCAAAAAACGTG 240


5361R-1.IR_full       241 AGGATATTTGTGATACAGGGAATCGATGGACGAGACTTGGCTGCTTTTCGATTTCCAACC 300
                          ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
5361R-1.in silico     241 AGGATATTTGTGATACAGGGAATCGATGGACGAGACTGGGCTGCTTTTCGATTTCCAACC 300


5361R-1.IR_full       301 AGCGATGCTAGTCGCGGCAATACCAACTTTATTTGGGATCGGTTTCCCCACTTGGCTCGC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5361R-1.in silico     301 AGCGATGCTAGTCGCGGCAATACCAACTTTATTTGGGATCGGTTTCCCCACTTGGCTCGC 360


5361R-1.IR_full       361 TTGAAAAACAGTTGCAGTCAGCAGTTTCCCTGTCAAGTGGCCAGTGTTTCCCGAGCTCTT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5361R-1.in silico     361 TTGAAAAACAGTTGCAGTCAGCAGTTTCCCTGTCAAGTGGCCAGTGTTTCCCGAGCTCTT 420


5361R-1.IR_full       421 TGGTTGGGAATTCCTTTGGATAAAGTCCCAGAAAATCAGCAGGATTGCGGAAGGTTATTT 480
                          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
5361R-1.in silico     421 TGGTTGGGAATTCCTTTGGATAAAGTCCCAGACAATCAGCAGGATTGCGGAAGGTTATTT 480


5361R-1.IR_full       481 AATGCAACNCAAGGCCCGAT 500
                          |||||||| |||||||||||
5361R-1.in silico     481 AATGCAACGCAAGGCCCGAT 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_141721.1  CG5361-RA (CG5361), mRNA 
0   NM_141757.1  CG14685-RB, transcript variant B (Cap-H2), mRNA 
0   NM_169358.1  CG14685-RA, transcript variant A (Cap-H2), mRNA 
0   NM_169359.1  CG14685-RC, transcript variant C (Cap-H2), mRNA 
0   NM_170468.1  CG31029-RA (CG31029), mRNA 
0   NM_137537.2  CG15099-RA (CG15099), mRNA 
0   NM_134545.2  CG15459-RA (CG15459), mRNA 
0   NM_130545.2  CG11411-RA (fs(1)N), mRNA 
0   NM_165093.1  CG15279-RB, transcript variant B (CG15279), mRNA 
0   NM_135882.2  CG15279-RA, transcript variant A (CG15279), mRNA 
0   NM_001014484.1  CG15279-RC, transcript variant C (CG15279), mRNA 
0   NM_142221.1  CG18516-RA (CG18516), mRNA 
0   NM_133003.2  CG32555-RB, transcript variant B (RhoGAPp190), mRNA 
0   NM_167573.1  CG32555-RC, transcript variant C (RhoGAPp190), mRNA 
0   NM_167572.1  CG32555-RA, transcript variant A (RhoGAPp190), mRNA 
0   NM_136913.2  CG17739-RA (CG17739), mRNA 
0   NM_140737.1  CG6298-RA (Jon74E), mRNA 
0   NM_001043218.1  CG33097-RB, transcript variant B (CG33097), mRNA 
0   NM_176408.1  CG33097-RA, transcript variant A (CG33097), mRNA 
0   NM_130658.2  CG10260-RB (CG10260), mRNA 
0   NM_079106.2  CG4817-RA (Ssrp), mRNA 
0   NM_079738.2  CG6768-RA (DNApol-epsilon), mRNA 
0   NM_139712.1  CG13285-RA (CG13285), mRNA 
0   NM_078895.3  CG2981-RA (TpnC41C), mRNA 
0   NM_142001.1  CG17319-RA (CG17319), mRNA 
0   NM_143806.2  CG8325-RA (l(2)k14710), mRNA 
0   NM_080330.2  CG3620-RA, transcript variant A (norpA), mRNA 
0   NM_001014721.1  CG3620-RC, transcript variant C (norpA), mRNA 
0   NM_167008.1  CG3620-RB, transcript variant B (norpA), mRNA 
0   NM_001014720.1  CG3620-RD, transcript variant D (norpA), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
DM
VM
VB
 
Dcompartment   Penetrance
   

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