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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5316R-2 
 Symbol CG5316  Full Name CG5316 
 CG No CG5316  Old CG No CG5316 
 Synonyms CG5316 
 Accession No (Link to NCBI) NM_169859.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGTCCTGGTCAAGTGCACTAA 
 Primer Seq. 3'
aatctagaggtaccTAGCCTGCGCCGTGTTCTAAT 
 Predicted Fragment Size
407 
 IR fragment full Seq
0001 TGTCCTGGTC AAGTGCACTA ATCAAAGATA TCTCGAAACC AGAAAATTTG ATCATTTCGT 
0061 CAGAAATCGC AGTGGTCATA GCAGACAAGT TTCCCNAAGG CGCAGCATCA CTACTTGGTG 
0121 CTACCATTGG CCGACATTCC CAGCATCTTT CACTTGAACC GGAGCCATCT GTCGCTTTTG 
0181 GAGGAGCTGC ATCTGCTGGC CAGGAACGTT GTGGANAGTG AAAGGAGTCC GGTGGCAGGA 
0241 CTTCAACGTG GGATTTCACG CGGAGCCGAG CATGCAAAGG CTCCACCTGC ACGTCATCTC 
0301 CAAGGNCTTC GTATCAACAA GCCTGAAGAC CAAGAAGCAT TGGAACTCAT TCAACACCGA 
0361 GCTGTTTGTG CCCTACACAA GTAAGGCTAT TAGAACACGG CGCAGGCTA 
 in silico PCR Fragment
0001 TGTCCTGGTC AAGTGCACTA ATCAAAGATA TCTCGAAACC AGAAAATTTG ATCATTTCGT 
0061 CAGAAATCGC AGTGGTCATA GCAGACAAGT TTCCC-AAGG CGCAGCATCA CTACTTGGTG 
0121 CTACCATTGG CCGACATTCC CAGCATCTTT CACTTGAACC GGAGCCATCT GTCGCTTTTG 
0181 GAGGAGCTGC ATCTGCTGGC CAGGAACGTT GTGGA-AGTG AAAGGAGTCC GGTGGCAGGA 
0241 CTTCAACGTG GGATTTCACG CGGAGCCGAG CATGCAAAGG CTCCACCTGC ACGTCATCTC 
0301 CAAGGACTTC GTATCAACAA GCCTGAAGAC CAAGAAGCAT TGGAACTCAT TCAACACCGA 
0361 GCTGTTTGTG CCCTACACAA GTAAGGCTAT TAGAACACGG CGCAGGCTA 
 Assemble Data

5316R-2.IR_full       1   TGTCCTGGTCAAGTGCACTAATCAAAGATATCTCGAAACCAGAAAATTTGATCATTTCGT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5316R-2.in silico     1   TGTCCTGGTCAAGTGCACTAATCAAAGATATCTCGAAACCAGAAAATTTGATCATTTCGT 60


5316R-2.IR_full       61  CAGAAATCGCAGTGGTCATAGCAGACAAGTTTCCCNAAGGCGCAGCATCACTACTTGGTG 120
                          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
5316R-2.in silico     61  CAGAAATCGCAGTGGTCATAGCAGACAAGTTTCCC-AAGGCGCAGCATCACTACTTGGTG 120


5316R-2.IR_full       121 CTACCATTGGCCGACATTCCCAGCATCTTTCACTTGAACCGGAGCCATCTGTCGCTTTTG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5316R-2.in silico     121 CTACCATTGGCCGACATTCCCAGCATCTTTCACTTGAACCGGAGCCATCTGTCGCTTTTG 180


5316R-2.IR_full       181 GAGGAGCTGCATCTGCTGGCCAGGAACGTTGTGGANAGTGAAAGGAGTCCGGTGGCAGGA 240
                          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
5316R-2.in silico     181 GAGGAGCTGCATCTGCTGGCCAGGAACGTTGTGGA-AGTGAAAGGAGTCCGGTGGCAGGA 240


5316R-2.IR_full       241 CTTCAACGTGGGATTTCACGCGGAGCCGAGCATGCAAAGGCTCCACCTGCACGTCATCTC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5316R-2.in silico     241 CTTCAACGTGGGATTTCACGCGGAGCCGAGCATGCAAAGGCTCCACCTGCACGTCATCTC 300


5316R-2.IR_full       301 CAAGGNCTTCGTATCAACAAGCCTGAAGACCAAGAAGCATTGGAACTCATTCAACACCGA 360
                          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
5316R-2.in silico     301 CAAGGACTTCGTATCAACAAGCCTGAAGACCAAGAAGCATTGGAACTCATTCAACACCGA 360


5316R-2.IR_full       361 GCTGTTTGTGCCCTACACAAGTAAGGCTATTAGAACACGGCGCAGGCTA 409
                          |||||||||||||||||||||||||||||||||||||||||||||||||
5316R-2.in silico     361 GCTGTTTGTGCCCTACACAAGTAAGGCTATTAGAACACGGCGCAGGCTA 409

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   389  NM_169859.1  CG5316-RA, transcript variant A (CG5316), mRNA 
92.54   360  NM_169858.1  CG5316-RC, transcript variant C (CG5316), mRNA 
92.54   360  NM_142548.1  CG5316-RB, transcript variant B (CG5316), mRNA 
0.51   NM_001014630.1  CG33547-RA (Rim), mRNA 
0   NM_140201.2  CG7573-RA, transcript variant A (CG7573), mRNA 
0   NM_140174.4  CG7839-RA (CG7839), mRNA 
0   NM_205940.1  CG10595-RB, transcript variant B (d), mRNA 
0   NM_175991.1  CG10595-RA, transcript variant A (d), mRNA 
0   NM_080304.2  CG3466-RA (Cyp4d2), mRNA 
0   NM_001038902.1  CG33993-RA (CG33993), mRNA 
0   NM_169589.1  CG31317-RB, transcript variant B (stumps), mRNA 
0   NM_169588.1  CG31317-RA, transcript variant A (stumps), mRNA 
0   NM_176549.1  CG13598-RB, transcript variant B (sba), mRNA 
0   NM_170094.2  CG13598-RA, transcript variant A (sba), mRNA 
0   NM_144393.1  CG18747-RA (CG18747), mRNA 
0   NM_142687.1  CG5793-RA (CG5793), mRNA 
0   NM_176682.1  CG2930-RD, transcript variant D (CG2930), mRNA 
0   NM_176684.1  CG2930-RB, transcript variant B (CG2930), mRNA 
0   NM_176683.1  CG2930-RA, transcript variant A (CG2930), mRNA 
0   NM_166566.1  CG3504-RA (inaD), mRNA 
0   NM_132479.2  CG1597-RA (CG1597), mRNA 
0   NM_136242.2  CG12050-RA (CG12050), mRNA 
0   NM_136170.1  CG13965-RA (CG13965), mRNA 
0   NM_132072.1  CG14446-RA (CG14446), mRNA 
0   NM_132831.1  CG8184-RB (CG8184), mRNA 
0   NM_164762.1  CG7052-RC, transcript variant C (TepII), mRNA 
0   NM_164761.1  CG7052-RB, transcript variant B (TepII), mRNA 
0   NM_078782.2  CG7052-RA, transcript variant A (TepII), mRNA 
0   NM_001043261.1  CG34157-RG, transcript variant G (Dys), mRNA 
0   NM_164763.1  CG7052-RE, transcript variant E (TepII), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
DC
DM
VM
VB
 
Dcompartment   Penetrance
     

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