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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5226R-3 
 Symbol CG5226  Full Name CG5226 
 CG No CG5226  Old CG No CG5226 
 Synonyms anon-WO0149848.1, CG5226 
 Accession No (Link to NCBI) NM_137496.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGAGCCTGGTGGCCTCAAGT 
 Primer Seq. 3'
aatctagaggtaccGTCATTCAGGCCCAGCAGTTT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGAGCCTGG TGGCCTCAAG TGGTGGATCG TGCTCTGCCT GATGCTGTCC TGGACCATTG 
0061 TCTTCTTCAT CGTAATGAAG GGCATCCAGA GCTCCGGCAA GGTTGTCTAC TTCACCTCGC 
0121 TCTTTCCCTA CATTGTGCTG ACCATCTTCT TCATTCGCGG CATCACGTTG AGAGGAGCGG 
0181 GCGCTGGACT GATGCACATG TATACGCCAA AGGTGGAAAA ATTACTGGAG CCCACCGTTT 
0241 GGCTGGATGC AGCCACACAG GTCTTTTACT CCTTTGGCCT GGCCTTTGGA TCCCTGATCG 
0301 CCTTCGGGAG CTACAACACG CCGAAGAACA ACTGCGTGCG GGATGTGCTC CTGGTGTCCG 
0361 TGTGCAATGC AGTTACGGCT ATCTACGCCA GCGTGGTCAT CTTCGCCATT CTGGGCTTCA 
0421 AGGCCACCGT CAATGTGGAC CGTTGTGTAG CCAGTAACAC GGAAATCCTG GTGAAAAACA 
0481 AACTGCTGGG CCTGAATGAC  
 in silico PCR Fragment
0001 ATGAGCCTGG TGGCCTCAAG TGGTGGATCG TGCTCTGCCT GATGCTGTCC TGGACCATTG 
0061 TCTTCTTCAT CGTAATGAAG GGCATCCAGA GCTCCGGCAA GGTTGTCTAC TTCACCTCGC 
0121 TCTTTCCCTA CATTGTGCTG ACCATCTTCT TCATTCGCGG CATCACGTTG AGAGGAGCGG 
0181 GCGCTGGACT GATGCACATG TATACGCCAA AGGTGGAAAA ATTACTGGAG CCCACCGTTT 
0241 GGCTGGATGC AGCCACACAG GTCTTTTACT CCTTTGGCCT GGCCTTTGGA TCCCTGATCG 
0301 CCTTCGGGAG CTACAACACG CCGAAGAACA ACTGCGTGCG GGATGTGCTC CTGGTGTCCG 
0361 TGTGCAATGC AGTTACGGCT ATCTACGCCA GCGTGGTCAT CTTCGCCATT CTGGGCTTCA 
0421 AGGCCACCGT CAATGTGGAC CGTTGTGTAG CCAGTAACAC GGAAATCCTG GTGAAAAACA 
0481 AACTGCTGGG CCTGAATGAC  
 Assemble Data

5226R-3.IR_full       1   ATGAGCCTGGTGGCCTCAAGTGGTGGATCGTGCTCTGCCTGATGCTGTCCTGGACCATTG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5226R-3.in silico     1   ATGAGCCTGGTGGCCTCAAGTGGTGGATCGTGCTCTGCCTGATGCTGTCCTGGACCATTG 60


5226R-3.IR_full       61  TCTTCTTCATCGTAATGAAGGGCATCCAGAGCTCCGGCAAGGTTGTCTACTTCACCTCGC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5226R-3.in silico     61  TCTTCTTCATCGTAATGAAGGGCATCCAGAGCTCCGGCAAGGTTGTCTACTTCACCTCGC 120


5226R-3.IR_full       121 TCTTTCCCTACATTGTGCTGACCATCTTCTTCATTCGCGGCATCACGTTGAGAGGAGCGG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5226R-3.in silico     121 TCTTTCCCTACATTGTGCTGACCATCTTCTTCATTCGCGGCATCACGTTGAGAGGAGCGG 180


5226R-3.IR_full       181 GCGCTGGACTGATGCACATGTATACGCCAAAGGTGGAAAAATTACTGGAGCCCACCGTTT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5226R-3.in silico     181 GCGCTGGACTGATGCACATGTATACGCCAAAGGTGGAAAAATTACTGGAGCCCACCGTTT 240


5226R-3.IR_full       241 GGCTGGATGCAGCCACACAGGTCTTTTACTCCTTTGGCCTGGCCTTTGGATCCCTGATCG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5226R-3.in silico     241 GGCTGGATGCAGCCACACAGGTCTTTTACTCCTTTGGCCTGGCCTTTGGATCCCTGATCG 300


5226R-3.IR_full       301 CCTTCGGGAGCTACAACACGCCGAAGAACAACTGCGTGCGGGATGTGCTCCTGGTGTCCG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5226R-3.in silico     301 CCTTCGGGAGCTACAACACGCCGAAGAACAACTGCGTGCGGGATGTGCTCCTGGTGTCCG 360


5226R-3.IR_full       361 TGTGCAATGCAGTTACGGCTATCTACGCCAGCGTGGTCATCTTCGCCATTCTGGGCTTCA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5226R-3.in silico     361 TGTGCAATGCAGTTACGGCTATCTACGCCAGCGTGGTCATCTTCGCCATTCTGGGCTTCA 420


5226R-3.IR_full       421 AGGCCACCGTCAATGTGGACCGTTGTGTAGCCAGTAACACGGAAATCCTGGTGAAAAACA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5226R-3.in silico     421 AGGCCACCGTCAATGTGGACCGTTGTGTAGCCAGTAACACGGAAATCCTGGTGAAAAACA 480


5226R-3.IR_full       481 AACTGCTGGGCCTGAATGAC 500
                          ||||||||||||||||||||
5226R-3.in silico     481 AACTGCTGGGCCTGAATGAC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_137496.1  CG5226-RA (CG5226), mRNA 
0.2   NM_165559.1  CG1891-RB, transcript variant B (sax), mRNA 
0.2   NM_078928.2  CG1891-RA, transcript variant A (sax), mRNA 
0   31  NM_137992.1  CG5549-RA (CG5549), mRNA 
0   NM_165943.1  CG8772-RB, transcript variant B (nemy), mRNA 
0   NM_166808.1  CG11154-RA, transcript variant A (ATPsyn-beta), mRNA 
0   NM_166809.1  CG11154-RB, transcript variant B (ATPsyn-beta), mRNA 
0   NM_135401.1  CG9289-RA (CG9289), mRNA 
0   NM_078783.2  CG7068-RA (TepIII), mRNA 
0   NM_139981.2  CG6831-RA (rhea), mRNA 
0   NM_137297.1  CG8303-RA (CG8303), mRNA 
0   NM_137883.1  CG13535-RA (CG13535), mRNA 
0   NM_164800.1  CG8372-RB, transcript variant B (CG8372), mRNA 
0   NM_135350.2  CG8372-RA, transcript variant A (CG8372), mRNA 
0   NM_137087.2  CG12366-RA (O-fut1), mRNA 
0   NM_140768.1  CG14353-RA (CG14353), mRNA 
0   NM_206238.1  CG13923-RA (CG13923), mRNA 
0   NM_001032031.1  CG33933-RA, transcript variant A (Indy-2), mRNA 
0   NM_001032028.1  CG33934-RB, transcript variant B (CG33934), mRNA 
0   NM_001032029.1  CG33934-RA, transcript variant A (CG33934), mRNA 
0   NM_143595.1  CG1746-RA, transcript variant A (CG1746), mRNA 
0   NM_170544.1  CG1746-RC, transcript variant C (CG1746), mRNA 
0   NM_170543.1  CG1746-RB, transcript variant B (CG1746), mRNA 
0   NM_164719.1  CG32829-RA (CG32829), mRNA 
0   NM_206237.1  CG12022-RA (CG12022), mRNA 
0   NM_166332.1  CG10737-RB, transcript variant B (CG10737), mRNA 
0   NM_001014538.1  CG10737-RE, transcript variant E (CG10737), mRNA 
0   NM_141863.1  CG6946-RA, transcript variant A (glo), mRNA 
0   NM_169435.1  CG6946-RC, transcript variant C (glo), mRNA 
0   NM_001014584.1  CG4879-RC, transcript variant C (RecQ5), mRNA 

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