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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 5111R-3 
 Symbol CG5111  Full Name CG5111 
 CG No CG5111  Old CG No CG5111 
 Synonyms CG5111 
 Accession No (Link to NCBI) NM_143145.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCTGCGGGAGCGTGATATCAA 
 Primer Seq. 3'
aatctagaggtaccCCAAGTCCGCACGAATCCTTT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCTGCGGGCA GCGtNATATC AAGTTGTGGG AGGAGCCGTA CTACTTCGAG GAGGTGGGCA 
0061 GCATCGAGTC GGAGATGGAC CGCCTGGCCA GGGACATCAG TGGCGAACTG GGCATCAGTG 
0121 TGTCGGACTG CAGAATTGCC TTGGGCGAAT TGCAAGATGG TGCCTTGCGG AAGCTGGCGG 
0181 CTCGCCGAGN AGTTCAATGA CACCGGATTG GCCACGTTCA ATGTGCGGTG TGTGGACAGC 
0241 AAAGGGTGGC ACCGTGCAAA TGCTGGAGAT CAAGTGTTCG CTGGGTGGAC TGGGCTCGGA 
0301 TCTGCAAGCT GAGGTGGCCA AGAAGTTGGA TATCGTTGAT TCCAGTCATG TGAAATGCAT 
0361 CTCCGGAGGA CGCATCATCA ATGGGCAGAA GACACTGGCC TCGCAGGGGC TCAAAACCAA 
0421 TCAGCACCTC ATGGTGGTTG TGGGTGGAAC TAATGAAGGT CAGGAGTTGC ACGAACGTAT 
0481 CCAAAGGATT CGTGCGGACT TGG 
 in silico PCR Fragment
0001 TCTGCGGG-A GCGTGATATC AAGTTGTGGG AGGAGCCGTA CTACTTCGAG GAGGTGGGCA 
0061 GCATCGAGTC GGAGATGGAC CGCCTGGCCA GGGACATCAG TGGCGAACTG GGCATCAGTG 
0121 TGTCGGACTG CAGAATTGCC TTGGGCGAAT TGCAAGATGG TGCCTTGCGG AAGCTGGCGG 
0181 CTCGCCGAG- AGTTCAATGA CACCGGATTG GCCACGTTCA ATGTGCGGTG TGTGGACAGC 
0241 -AAGGGTGGC ACCGTGCAAA TGCTGGAGAT CAAGTGTTCG CTGGGTGGAC TGGGCTCGGA 
0301 TCTGCAAGCT GAGGTGGCCA AGAAGTTGGA TATCGTTGAT TCCAGTCATG TGAAATGCAT 
0361 CTCCGGAGGA CGCATCATCA ATGGGCAGAA GACACTGGCC TCGCAGGGGC TCAAAACCAA 
0421 TCAGCACCTC ATGGTGGTTG TGGGTGGAAC TAATGAAGGT CAGGAGTTGC ACGAACGTAT 
0481 CCAAAGGATT CGTGCGGACT TGG 
 Assemble Data

5111R-3.IR_full       1   TCTGCGGGCAGCGTNATATCAAGTTGTGGGAGGAGCCGTACTACTTCGAGGAGGTGGGCA 60
                          |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
5111R-3.in silico     1   TCTGCGGG-AGCGTGATATCAAGTTGTGGGAGGAGCCGTACTACTTCGAGGAGGTGGGCA 60


5111R-3.IR_full       61  GCATCGAGTCGGAGATGGACCGCCTGGCCAGGGACATCAGTGGCGAACTGGGCATCAGTG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5111R-3.in silico     61  GCATCGAGTCGGAGATGGACCGCCTGGCCAGGGACATCAGTGGCGAACTGGGCATCAGTG 120


5111R-3.IR_full       121 TGTCGGACTGCAGAATTGCCTTGGGCGAATTGCAAGATGGTGCCTTGCGGAAGCTGGCGG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5111R-3.in silico     121 TGTCGGACTGCAGAATTGCCTTGGGCGAATTGCAAGATGGTGCCTTGCGGAAGCTGGCGG 180


5111R-3.IR_full       181 CTCGCCGAGNAGTTCAATGACACCGGATTGGCCACGTTCAATGTGCGGTGTGTGGACAGC 240
                          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
5111R-3.in silico     181 CTCGCCGAG-AGTTCAATGACACCGGATTGGCCACGTTCAATGTGCGGTGTGTGGACAGC 240


5111R-3.IR_full       241 AAAGGGTGGCACCGTGCAAATGCTGGAGATCAAGTGTTCGCTGGGTGGACTGGGCTCGGA 300
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5111R-3.in silico     241 -AAGGGTGGCACCGTGCAAATGCTGGAGATCAAGTGTTCGCTGGGTGGACTGGGCTCGGA 300


5111R-3.IR_full       301 TCTGCAAGCTGAGGTGGCCAAGAAGTTGGATATCGTTGATTCCAGTCATGTGAAATGCAT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5111R-3.in silico     301 TCTGCAAGCTGAGGTGGCCAAGAAGTTGGATATCGTTGATTCCAGTCATGTGAAATGCAT 360


5111R-3.IR_full       361 CTCCGGAGGACGCATCATCAATGGGCAGAAGACACTGGCCTCGCAGGGGCTCAAAACCAA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5111R-3.in silico     361 CTCCGGAGGACGCATCATCAATGGGCAGAAGACACTGGCCTCGCAGGGGCTCAAAACCAA 420


5111R-3.IR_full       421 TCAGCACCTCATGGTGGTTGTGGGTGGAACTAATGAAGGTCAGGAGTTGCACGAACGTAT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5111R-3.in silico     421 TCAGCACCTCATGGTGGTTGTGGGTGGAACTAATGAAGGTCAGGAGTTGCACGAACGTAT 480


5111R-3.IR_full       481 CCAAAGGATTCGTGCGGACTTGG 503
                          |||||||||||||||||||||||
5111R-3.in silico     481 CCAAAGGATTCGTGCGGACTTGG 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_143145.1  CG5111-RA (CG5111), mRNA 
0.2   NM_164451.1  CG31672-RA (CG31672), mRNA 
0   NM_167729.1  CG15445-RA, transcript variant A (CG15445), mRNA 
0   NM_134592.2  CG15445-RD, transcript variant D (CG15445), mRNA 
0   NM_167730.1  CG15445-RB, transcript variant B (CG15445), mRNA 
0   NM_167731.1  CG15445-RC, transcript variant C (CG15445), mRNA 
0   NM_080485.3  CG8340-RA (128up), mRNA 
0   NM_057875.3  CG5029-RA, transcript variant A (SamDC), mRNA 
0   10  NM_001043124.1  CG8601-RC, transcript variant C (mus312), mRNA 
0   10  NM_139847.2  CG8601-RA, transcript variant A (mus312), mRNA 
0   10  NM_168200.1  CG8601-RB, transcript variant B (mus312), mRNA 
0   NM_143625.1  CG11550-RA (CG11550), mRNA 
0   NM_168783.1  CG18223-RB, transcript variant B (CG18223), mRNA 
0   NM_140820.1  CG18223-RA, transcript variant A (CG18223), mRNA 
0   NM_140936.2  CG17147-RA (CG17147), mRNA 
0   NM_206163.1  CG5170-RB, transcript variant B (Dp1), mRNA 
0   NM_079057.2  CG5170-RC, transcript variant C (Dp1), mRNA 
0   NM_206164.1  CG5170-RA, transcript variant A (Dp1), mRNA 
0   NM_166280.1  CG5170-RD, transcript variant D (Dp1), mRNA 
0   NM_166281.1  CG5170-RE, transcript variant E (Dp1), mRNA 
0   NM_166282.1  CG5170-RF, transcript variant F (Dp1), mRNA 
0   NM_132125.1  CG4536-RA (CG4536), mRNA 
0   NM_168747.1  CG32181-RA (CG32181), mRNA 
0   NM_057554.2  CG2163-RA, transcript variant A (Pabp2), mRNA 
0   NM_165589.1  CG2163-RB, transcript variant B (Pabp2), mRNA 
0   NM_167908.1  CG7961-RB, transcript variant B (alphaCop), mRNA 
0   NM_058047.3  CG7961-RA, transcript variant A (alphaCop), mRNA 
0   NM_080362.2  CG31868-RA (Samuel), mRNA 
0   NM_166223.1  CG6556-RA (cnk), mRNA 
0   NM_135240.2  CG10158-RA (CG10158), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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