Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
5096R-3 |
Symbol |
CG5096 |
Full Name |
CG5096 |
CG No |
CG5096 |
Old CG No |
CG5096 |
Synonyms |
CT16355, CG5096 |
Accession No (Link to NCBI) |
NM_164918.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGATCTGCATAGCTTGGATGCG |
Primer Seq. 3' |
aatctagaggtaccTGGCCACCAGTTACGTTCTTG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GATCTGCATA GCTTGGATGC GGATCTGTTT GAACACATTC CCCACATTGA GGAACTCGTT
0061 CTCTGCTCAA ATAGTTTTCA TGTCATCGAT CAACTTTCAG AAACAGCCAT TTCCGGCTTA
0121 CAATCGTTGA AGATCTTGGA TGTCTCTTAT ATGGAAATCG ATGACTTGCC GGATACAATT
0181 CTACATGGTC CCCGAGATCT TGAGATCTTT ATAGCAGCTG GCAATCTGTT TAATCAATTG
0241 CCAAAGGCCC TGAAATATGC GACGAACTTG ACCAGCCTGG TCTTAAACGA AAATCCCATC
0301 GAAAATTTGA TTGGCGACAA TGTATTTCCA CCTTTGACCA AATTGACCCA CCTCAGCATG
0361 ACTTTTATGT CCAAGTTGTA CAAAATTGGG CCAGGAGCAT TTAGTGAACT GCAAAGTTTA
0421 ACTGAACTGA TATTGTCCGA CAACAAACTG CTAAATGAAA TTGATGAGGA GGCTCTATCC
0481 AAGAACGTAA CTGGTGGCCA |
in silico PCR Fragment |
0001 GATCTGCATA GCTTGGATGC GGATCTGTTT GAACACATTC CCCACATTGA GGAACTCGTT
0061 CTCTGCTCAA ATAGTTTTCA TGTCATCGAT CAACTTTCAG AAACAGCCAT TTCCGGCTTA
0121 CAATCGTTGA AGATCTTGGA TGTCTCTTAT ATGGAAATCG ATGACTTGCC GGATACAATT
0181 CTACATGGTC CCCGAGATCT TGAGATCTTT ATAGCAGCTG GCAATCTGTT TAATCAATTG
0241 CCAAAGGCCC TGAAATATGC GACGAACTTG ACCAGCCTGG TCTTAAACGA AAATCCCATC
0301 GAAAATTTGA TTGGCGACAA TGTATTTCCA CCTTTGACCA AATTGACCCA CCTCAGCATG
0361 ACTTTTATGT CCAAGTTGTA CAAAATTGGG CCAGGAGCAT TTAGTGAACT GCAAAGTTTA
0421 ACTGAACTGA TATTGTCCGA CAACAAACTG CTAAATGAAA TTGATGAGGA GGCTCTATCC
0481 AAGAACGTAA CTGGTGGCCA |
Assemble Data |
5096R-3.IR_full 1 GATCTGCATAGCTTGGATGCGGATCTGTTTGAACACATTCCCCACATTGAGGAACTCGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5096R-3.in silico 1 GATCTGCATAGCTTGGATGCGGATCTGTTTGAACACATTCCCCACATTGAGGAACTCGTT 60
5096R-3.IR_full 61 CTCTGCTCAAATAGTTTTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCTTA 120
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5096R-3.in silico 61 CTCTGCTCAAATAGTTTTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCTTA 120
5096R-3.IR_full 121 CAATCGTTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTGCCGGATACAATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5096R-3.in silico 121 CAATCGTTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTGCCGGATACAATT 180
5096R-3.IR_full 181 CTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGCTGGCAATCTGTTTAATCAATTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5096R-3.in silico 181 CTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGCTGGCAATCTGTTTAATCAATTG 240
5096R-3.IR_full 241 CCAAAGGCCCTGAAATATGCGACGAACTTGACCAGCCTGGTCTTAAACGAAAATCCCATC 300
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5096R-3.in silico 241 CCAAAGGCCCTGAAATATGCGACGAACTTGACCAGCCTGGTCTTAAACGAAAATCCCATC 300
5096R-3.IR_full 301 GAAAATTTGATTGGCGACAATGTATTTCCACCTTTGACCAAATTGACCCACCTCAGCATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5096R-3.in silico 301 GAAAATTTGATTGGCGACAATGTATTTCCACCTTTGACCAAATTGACCCACCTCAGCATG 360
5096R-3.IR_full 361 ACTTTTATGTCCAAGTTGTACAAAATTGGGCCAGGAGCATTTAGTGAACTGCAAAGTTTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5096R-3.in silico 361 ACTTTTATGTCCAAGTTGTACAAAATTGGGCCAGGAGCATTTAGTGAACTGCAAAGTTTA 420
5096R-3.IR_full 421 ACTGAACTGATATTGTCCGACAACAAACTGCTAAATGAAATTGATGAGGAGGCTCTATCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5096R-3.in silico 421 ACTGAACTGATATTGTCCGACAACAAACTGCTAAATGAAATTGATGAGGAGGCTCTATCC 480
5096R-3.IR_full 481 AAGAACGTAACTGGTGGCCA 500
||||||||||||||||||||
5096R-3.in silico 481 AAGAACGTAACTGGTGGCCA 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_164918.1 |
CG5096-RA (CG5096), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_136340.2 |
CG7897-RA (gp210), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_166335.2 |
CG7097-RA, transcript variant A (CG7097), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_137555.2 |
CG7097-RB, transcript variant B (CG7097), mRNA |
0 |
0 |
1 |
8 |
3 |
NM_206678.1 |
CG33175-RA, transcript variant A (spri), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_205957.1 |
CG33304-RA (rho-5), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_142445.1 |
CG7146-RA (CG7146), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_170576.1 |
CG1945-RC, transcript variant C (faf), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_079873.3 |
CG1945-RA, transcript variant A (faf), mRNA |
0 |
0 |
0 |
6 |
6 |
NM_057257.3 |
CG7664-RA (crp), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_166734.1 |
CG32006-RA (CG32006), mRNA |
0 |
0 |
0 |
4 |
6 |
NM_138088.2 |
CG11414-RA (CG11414), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_139532.1 |
CG14967-RA (CG14967), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_057926.2 |
CG10533-RA (Lcp65Af), mRNA |
0 |
0 |
0 |
3 |
8 |
NM_080003.2 |
CG5012-RA (mRpL12), mRNA |
0 |
0 |
0 |
3 |
7 |
NM_136017.2 |
CG15151-RA (PFE), mRNA |
0 |
0 |
0 |
3 |
7 |
NM_080306.2 |
CG3443-RB (pcx), mRNA |
0 |
0 |
0 |
3 |
5 |
NM_167245.1 |
CG32672-RA (Atg8a), mRNA |
0 |
0 |
0 |
3 |
5 |
NM_142930.2 |
CG10198-RA (Nup98), mRNA |
0 |
0 |
0 |
3 |
4 |
NM_142316.1 |
CG14906-RA (CG14906), mRNA |
0 |
0 |
0 |
3 |
4 |
NM_143802.2 |
CG8013-RA, transcript variant A (Su(z)12), mRNA |
0 |
0 |
0 |
3 |
4 |
NM_168826.1 |
CG8013-RB, transcript variant B (Su(z)12), mRNA |
0 |
0 |
0 |
3 |
4 |
NM_078583.2 |
CG2559-RA (Lsp1alpha), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_169956.1 |
CG31182-RA (CG31182), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_140056.2 |
CG3891-RA (CG3891), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_141014.1 |
CG10588-RA (CG10588), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_169690.1 |
CG8884-RB, transcript variant B (Sap47), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_139816.1 |
CG8641-RA (CG8641), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_206420.1 |
CG33291-RA (CG33291), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_079647.2 |
CG8884-RF, transcript variant F (Sap47), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
N |
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DB |
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++ |
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DC |
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++ |
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DM |
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++ |
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VM |
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+ |
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VB |
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+- |
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Caspase-3 signal
N |
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DB |
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++ |
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DC |
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++ |
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DM |
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++ |
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VM |
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+ |
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VB |
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+ |
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Dcompartment |
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Penetrance |
+ |
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