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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
5061R-4 |
| Symbol |
capt |
Full Name |
capulet |
| CG No |
CG33979 |
Old CG No |
CG5061 |
| Synonyms |
CG33979, cyclase-associated protein, capping protein, CAP, Cap, acu, cap, Capt, Acap, l(2)06955, Dcap, CG5074, CG5061, BcDNA:LD24380, capt |
| Accession No (Link to NCBI) |
NM_001038780.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
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Reference
[Please submit your publication]
|
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgATGTACGCCTGGTCCCACCAA |
| Primer Seq. 3' |
aatctagaggtaccTGCGTCGAGGTCGGCTTCAGA |
| Predicted Fragment Size |
573 |
| IR fragment full Seq |
0001 ATGTACGCCT GGTCCCACCA AAGGCCACGC CAAGTTATTA TTTTCGCCAT TTCGCCTGTG
0061 TTCGCTACGC AGCTTCTCGT CAGTTCTAAT TGGAATACAA CTGCAGATCC TTGCAAATTC
0121 ATCAGCAGCA AAAGAAGATA ACGAGCCGGA AGCCAAGCCC TCGGCCGCCG TCGACCACTT
0181 GGAGAGCATT TGCGAGCGAC TGGAGACCCT CGTCGACCGA TTGGAACGGA CTCTAACAGC
0241 GCCACAGCCG ATAGAACTGC CCACGCCCAC ACTCCCGCCT CCGCCAGCCG AAGAAGAAGA
0301 AGCTCTTCCA GTTTTTGAAA AAGCAGAGAC ACCACCTCCA CCTCCCTCGC CGCCCAGCAG
0361 CAACATGAGT GTCGCCGGAT TCGAGGACAT TGTGGCGGGT CCGCTGAGCC AATACCTAAC
0421 TCTCTCCGCC AAAATTGGCG GCGATGTGGC GCAGCATGCG GAGCTCGTGA AGAgCGCCTT
0481 TGGCTCCCAA CTGCAGTACG TGACGCTGGC CACCCAGATC GCCCAGCCGg cGCAGCCCAA
0541 GCAGGCGGAG CTTCTGAAGC CGACCTCGAC GCA |
| in silico PCR Fragment |
0001 ATGTACGCCT GGTCCCACCA AAGGCCACGC CAAGTTATTA TTTTCGCCAT TTCGCCGGTG
0061 TTCGCTACGC AGCTTCTCGT CAGTTCTAAT TGGAATACAA CTGCAGATCC TTGCAAATTC
0121 ATCAGCAGCA AAAGAAGATA ACGAGCCGGA AGCCAAGCCC TCGGCCGCCG TCGACCACTT
0181 GGAGAGCATT TGCGAGCGAC TGGAGACCCT CGTCGACCGA TTGGAACGGA CTCTAACAGC
0241 GCCACAGCCG ATAGAACTGC CCACGCCCAC ACTCCCGCCT CCGCCAGCCG AAGAAGAAGA
0301 AGCTCTTCCA GTTTTTGAAA AAGCAGAGAC ACCACCTCCA CCTCCCTCGC CGCCCAGCAG
0361 CAACATGAGT GTCGCCGGAT TCGAGGACAT TGTGGCGGGT CCGCTGAGCC AATACCTAAC
0421 TCTCTCCGCC AAAATTGGCG GCGATGTGGC GCAGCATGCG GAGCTCGTGA AGAGCGCCTT
0481 TGGCTCCCAA CTGCAGTACG TGACGCTGGC CACCCAGATC GCCCAGCCGG CGCAGCCCAA
0541 GCAGGCGGAG CTTCTGAAGC CGACCTCGAC GCA |
| Assemble Data |
5061R-4.IR_full 1 ATGTACGCCTGGTCCCACCAAAGGCCACGCCAAGTTATTATTTTCGCCATTTCGCCTGTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
5061R-4.in silico 1 ATGTACGCCTGGTCCCACCAAAGGCCACGCCAAGTTATTATTTTCGCCATTTCGCCGGTG 60
5061R-4.IR_full 61 TTCGCTACGCAGCTTCTCGTCAGTTCTAATTGGAATACAACTGCAGATCCTTGCAAATTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5061R-4.in silico 61 TTCGCTACGCAGCTTCTCGTCAGTTCTAATTGGAATACAACTGCAGATCCTTGCAAATTC 120
5061R-4.IR_full 121 ATCAGCAGCAAAAGAAGATAACGAGCCGGAAGCCAAGCCCTCGGCCGCCGTCGACCACTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5061R-4.in silico 121 ATCAGCAGCAAAAGAAGATAACGAGCCGGAAGCCAAGCCCTCGGCCGCCGTCGACCACTT 180
5061R-4.IR_full 181 GGAGAGCATTTGCGAGCGACTGGAGACCCTCGTCGACCGATTGGAACGGACTCTAACAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5061R-4.in silico 181 GGAGAGCATTTGCGAGCGACTGGAGACCCTCGTCGACCGATTGGAACGGACTCTAACAGC 240
5061R-4.IR_full 241 GCCACAGCCGATAGAACTGCCCACGCCCACACTCCCGCCTCCGCCAGCCGAAGAAGAAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5061R-4.in silico 241 GCCACAGCCGATAGAACTGCCCACGCCCACACTCCCGCCTCCGCCAGCCGAAGAAGAAGA 300
5061R-4.IR_full 301 AGCTCTTCCAGTTTTTGAAAAAGCAGAGACACCACCTCCACCTCCCTCGCCGCCCAGCAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5061R-4.in silico 301 AGCTCTTCCAGTTTTTGAAAAAGCAGAGACACCACCTCCACCTCCCTCGCCGCCCAGCAG 360
5061R-4.IR_full 361 CAACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGGGTCCGCTGAGCCAATACCTAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5061R-4.in silico 361 CAACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGGGTCCGCTGAGCCAATACCTAAC 420
5061R-4.IR_full 421 TCTCTCCGCCAAAATTGGCGGCGATGTGGCGCAGCATGCGGAGCTCGTGAAGAGCGCCTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5061R-4.in silico 421 TCTCTCCGCCAAAATTGGCGGCGATGTGGCGCAGCATGCGGAGCTCGTGAAGAGCGCCTT 480
5061R-4.IR_full 481 TGGCTCCCAACTGCAGTACGTGACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5061R-4.in silico 481 TGGCTCCCAACTGCAGTACGTGACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAA 540
5061R-4.IR_full 541 GCAGGCGGAGCTTCTGAAGCCGACCTCGACGCA 573
|||||||||||||||||||||||||||||||||
5061R-4.in silico 541 GCAGGCGGAGCTTCTGAAGCCGACCTCGACGCA 573
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
555 |
0 |
0 |
6 |
NM_001038780.1 |
CG33979-RA, transcript variant A (capt), mRNA |
| 75.49 |
419 |
1 |
1 |
8 |
NM_001038781.1 |
CG33979-RB, transcript variant B (capt), mRNA |
| 0.18 |
1 |
2 |
4 |
2 |
NM_134665.2 |
CG3345-RA (CG3345), mRNA |
| 0 |
0 |
3 |
8 |
10 |
NM_168111.3 |
CG32423-RA, transcript variant A (alan-shepard), mRNA |
| 0 |
0 |
3 |
2 |
4 |
NM_137299.1 |
CG5065-RA (CG5065), mRNA |
| 0 |
0 |
2 |
5 |
8 |
NM_176509.1 |
CG31247-RA, transcript variant A (tinc), mRNA |
| 0 |
0 |
2 |
5 |
8 |
NM_176510.1 |
CG31247-RD, transcript variant D (tinc), mRNA |
| 0 |
0 |
2 |
5 |
8 |
NM_169780.2 |
CG31247-RB, transcript variant B (tinc), mRNA |
| 0 |
0 |
2 |
4 |
4 |
NM_164930.1 |
CG31719-RA, transcript variant A (RluA-1), mRNA |
| 0 |
0 |
2 |
4 |
4 |
NM_164931.1 |
CG31719-RB, transcript variant B (RluA-1), mRNA |
| 0 |
0 |
2 |
4 |
4 |
NM_164932.1 |
CG31719-RC, transcript variant C (RluA-1), mRNA |
| 0 |
0 |
2 |
4 |
3 |
NM_168412.1 |
CG32062-RD, transcript variant D (CG32062), mRNA |
| 0 |
0 |
2 |
4 |
3 |
NM_168413.1 |
CG32062-RB, transcript variant B (CG32062), mRNA |
| 0 |
0 |
2 |
3 |
8 |
NM_168470.1 |
CG32085-RA (CG32085), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_141533.2 |
CG7459-RA (Ctr1B), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_001014568.1 |
CG33523-RB, transcript variant B (CG33523), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_001014567.1 |
CG33523-RC, transcript variant C (CG33523), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_001014566.1 |
CG33523-RA, transcript variant A (CG33523), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_001014569.1 |
CG33523-RD, transcript variant D (CG33523), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_165823.1 |
CG30028-RA (gammaTry), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_165825.1 |
CG30025-RA (CG30025), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_165824.1 |
CG30031-RA (CG30031), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_057423.3 |
CG18444-RA (alphaTry), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_078970.3 |
CG12351-RA (deltaTry), mRNA |
| 0 |
0 |
1 |
7 |
9 |
NM_167524.2 |
CG9819-RB, transcript variant B (CanA-14F), mRNA |
| 0 |
0 |
1 |
7 |
8 |
NM_167523.2 |
CG9819-RA, transcript variant A (CanA-14F), mRNA |
| 0 |
0 |
1 |
7 |
6 |
NM_176603.1 |
CG31000-RH, transcript variant H (heph), mRNA |
| 0 |
0 |
1 |
5 |
7 |
NM_140437.1 |
CG7345-RA (Sox21a), mRNA |
| 0 |
0 |
1 |
4 |
5 |
NM_140295.2 |
CG6811-RA (RhoGAP68F), mRNA |
| 0 |
0 |
1 |
4 |
5 |
NM_206356.2 |
CG33261-RB, transcript variant B (Trl), mRNA |
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