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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
4938R-2 |
Symbol |
Aats-ser |
Full Name |
Seryl-tRNA synthetase |
CG No |
CG4938 |
Old CG No |
CG4938 |
Synonyms |
Aat-Ser, unnamed, SerRS, seryl-tRNA synthetase, SRS, CG4938, Aats-ser |
Accession No (Link to NCBI) |
NM_079641.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGACGAATTCTCAACTTTGGCG |
Primer Seq. 3' |
aatctagaggtaccTAAAACCGTGTTCGGTGACTG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 NACGAATTCT CAACTTTGGC GGCCTCTGCT GCTGCTGCGN CGCCAAAGGT CGCATGACGC
0061 AAAGGCGGTG GAGGCCCCAA TACACAGACC GGTTCCAACC AGTGCCCAGC TGGACGAACT
0121 GGAGCGGAAT GTGGTTGTGC GCCACCACAA GAACAACGTG CCACTGATAC GCTCTCTCAT
0181 CCAGGAGTTG GATGCGGGAG ACCAGCACAA GTTGAGGCAG CTGCAGGCGG AACTGGAACA
0241 GCTGCCCAAT GCCACGCATN CCGCGCCTGC GAGACTACGG AGAGGAGCCG CGGGAACTGG
0301 CGCAGTATGT CCACCGGCAG TTGACGCCAC AGTCCAGGCT CAAGGAGTTC TCTGAATTAG
0361 CCCGTGCTCT TAACCTCTAC CGCATGGATC ACTTGGGTAA CTACACTGGC CACAAAAGCT
0421 ACTACCTTAC TGGCCAGCTG GCAACTTTGG AGCAGGCCAT CATACAATAT GCACTTCAGG
0481 CAGTCACCGA ACACGGTTTT A |
in silico PCR Fragment |
0001 GACGAATTCT CAACTTTGGC GGCCTCTGCT GCTGCTGCGC CGCCAAAGGT CGCATGACGC
0061 AAAGGCGGTG GAGGCCCCAA TACACAGACC GGTTCCAACC AGTGCCCAGC TGGACGAACT
0121 GGAGCGGAAC GTGGTTGTGC GCCACCACAA GAACAACGTG CCACTGATAC GCTCTCTCAT
0181 CCAGGAGTTG GATGCGGGAG ACCAGCACAA GTTGAGGCAG CTGCAGGCGG AACTGGAACA
0241 GCTGCCCAAT GCCACGCAT- CCGCGCCTGC GAGACTACGG AGAGGAGCCG CGGGAACTGG
0301 CGCAGTATGT CCACCGGCAG TTGACGCCAC AGTCCAGGCT CAAGGAGTTC TCTGAATTAG
0361 CCCGTGCTCT TAACCTCTAC CGCATGGATC ACTTGGGTAA CTACACTGGC CACAAAAGCT
0421 ACTACCTTAC TGGCCAGCTG GCAACTTTGG AGCAGGCCAT CATACAATAT GCACTTCAGG
0481 CAGTCACCGA ACACGGTTTT A |
Assemble Data |
4938R-2.IR_full 1 ACGAATTCTCAACTTTGGCGGCCTCTGCTGCTGCTGCGNCGCCAAAGGTCGCATGACGC 59
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4938R-2.in silico 1 ACGAATTCTCAACTTTGGCGGCCTCTGCTGCTGCTGCGCCGCCAAAGGTCGCATGACGC 59
4938R-2.IR_full 61 AAAGGCGGTGGAGGCCCCAATACACAGACCGGTTCCAACCAGTGCCCAGCTGGACGAACT 119
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4938R-2.in silico 61 AAAGGCGGTGGAGGCCCCAATACACAGACCGGTTCCAACCAGTGCCCAGCTGGACGAACT 119
4938R-2.IR_full 121 GGAGCGGAATGTGGTTGTGCGCCACCACAAGAACAACGTGCCACTGATACGCTCTCTCAT 179
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4938R-2.in silico 121 GGAGCGGAACGTGGTTGTGCGCCACCACAAGAACAACGTGCCACTGATACGCTCTCTCAT 179
4938R-2.IR_full 181 CCAGGAGTTGGATGCGGGAGACCAGCACAAGTTGAGGCAGCTGCAGGCGGAACTGGAACA 239
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4938R-2.in silico 181 CCAGGAGTTGGATGCGGGAGACCAGCACAAGTTGAGGCAGCTGCAGGCGGAACTGGAACA 239
4938R-2.IR_full 241 GCTGCCCAATGCCACGCATNCCGCGCCTGCGAGACTACGGAGAGGAGCCGCGGGAACTGG 299
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4938R-2.in silico 241 GCTGCCCAATGCCACGCAT-CCGCGCCTGCGAGACTACGGAGAGGAGCCGCGGGAACTGG 299
4938R-2.IR_full 301 CGCAGTATGTCCACCGGCAGTTGACGCCACAGTCCAGGCTCAAGGAGTTCTCTGAATTAG 359
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4938R-2.in silico 301 CGCAGTATGTCCACCGGCAGTTGACGCCACAGTCCAGGCTCAAGGAGTTCTCTGAATTAG 359
4938R-2.IR_full 361 CCCGTGCTCTTAACCTCTACCGCATGGATCACTTGGGTAACTACACTGGCCACAAAAGCT 419
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4938R-2.in silico 361 CCCGTGCTCTTAACCTCTACCGCATGGATCACTTGGGTAACTACACTGGCCACAAAAGCT 419
4938R-2.IR_full 421 ACTACCTTACTGGCCAGCTGGCAACTTTGGAGCAGGCCATCATACAATATGCACTTCAGG 479
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4938R-2.in silico 421 ACTACCTTACTGGCCAGCTGGCAACTTTGGAGCAGGCCATCATACAATATGCACTTCAGG 479
4938R-2.IR_full 481 CAGTCACCGAACACGGTTTTA 500
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4938R-2.in silico 481 CAGTCACCGAACACGGTTTTA 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_079641.2 |
CG4938-RA (Aats-ser), mRNA |
0.82 |
4 |
4 |
9 |
51 |
NM_080376.1 |
CG8118-RA, transcript variant A (mam), mRNA |
0.82 |
4 |
4 |
9 |
51 |
NM_166030.1 |
CG8118-RB, transcript variant B (mam), mRNA |
0.2 |
1 |
3 |
2 |
3 |
NM_132573.1 |
CG17788-RA (CG17788), mRNA |
0.2 |
1 |
2 |
3 |
5 |
NM_143242.2 |
CG6420-RA (CG6420), mRNA |
0 |
0 |
4 |
2 |
12 |
NM_137701.2 |
CG4030-RA (CG4030), mRNA |
0 |
0 |
3 |
10 |
12 |
NM_132479.2 |
CG1597-RA (CG1597), mRNA |
0 |
0 |
3 |
5 |
4 |
NM_079253.3 |
CG6494-RA, transcript variant A (h), mRNA |
0 |
0 |
3 |
5 |
4 |
NM_001014577.1 |
CG6494-RB, transcript variant B (h), mRNA |
0 |
0 |
3 |
4 |
2 |
NM_165630.1 |
CG8266-RB, transcript variant B (sec31), mRNA |
0 |
0 |
3 |
4 |
2 |
NM_136570.2 |
CG8266-RA, transcript variant A (sec31), mRNA |
0 |
0 |
3 |
2 |
31 |
NM_001038742.1 |
CG6824-RD, transcript variant D (ovo), mRNA |
0 |
0 |
3 |
2 |
31 |
NM_080338.3 |
CG6824-RA, transcript variant A (ovo), mRNA |
0 |
0 |
3 |
2 |
23 |
NM_167026.2 |
CG6824-RB, transcript variant B (ovo), mRNA |
0 |
0 |
3 |
2 |
23 |
NM_167027.2 |
CG6824-RC, transcript variant C (ovo), mRNA |
0 |
0 |
2 |
6 |
41 |
NM_001038734.1 |
CG16902-RC (Hr4), mRNA |
0 |
0 |
2 |
5 |
10 |
NM_079561.2 |
CG9755-RC, transcript variant C (pum), mRNA |
0 |
0 |
2 |
5 |
10 |
NM_169259.1 |
CG9755-RD, transcript variant D (pum), mRNA |
0 |
0 |
2 |
5 |
10 |
NM_169258.1 |
CG9755-RA, transcript variant A (pum), mRNA |
0 |
0 |
2 |
5 |
6 |
NM_078762.4 |
CG9088-RA, transcript variant A (lid), mRNA |
0 |
0 |
2 |
5 |
6 |
NM_164671.1 |
CG9088-RB, transcript variant B (lid), mRNA |
0 |
0 |
2 |
5 |
5 |
NM_176427.1 |
CG9755-RE, transcript variant E (pum), mRNA |
0 |
0 |
2 |
5 |
5 |
NM_169260.1 |
CG9755-RB, transcript variant B (pum), mRNA |
0 |
0 |
2 |
5 |
2 |
NM_141300.1 |
CG2919-RA (CG2919), mRNA |
0 |
0 |
2 |
4 |
32 |
NM_132413.1 |
CG15295-RA (CG15295), mRNA |
0 |
0 |
2 |
4 |
16 |
NM_141937.1 |
CG17202-RA (CG17202), mRNA |
0 |
0 |
2 |
4 |
7 |
NM_057215.3 |
CG4807-RB, transcript variant B (ab), mRNA |
0 |
0 |
2 |
4 |
7 |
NM_057214.3 |
CG4807-RA, transcript variant A (ab), mRNA |
0 |
0 |
2 |
3 |
15 |
NM_131968.2 |
CG32772-RA (CG32772), mRNA |
0 |
0 |
2 |
3 |
13 |
NM_166057.1 |
CG8787-RA, transcript variant A (Asx), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
N |
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DB |
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+ |
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DC |
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+ |
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DM |
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++ |
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VM |
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++ |
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VB |
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Caspase-3 signal
N |
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++ |
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DB |
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++ |
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DC |
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++ |
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DM |
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++ |
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VM |
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++ |
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VB |
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Dcompartment |
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Penetrance |
+ |
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- |
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