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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4938R-2 
 Symbol Aats-ser  Full Name Seryl-tRNA synthetase 
 CG No CG4938  Old CG No CG4938 
 Synonyms Aat-Ser, unnamed, SerRS, seryl-tRNA synthetase, SRS, CG4938, Aats-ser 
 Accession No (Link to NCBI) NM_079641.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGACGAATTCTCAACTTTGGCG 
 Primer Seq. 3'
aatctagaggtaccTAAAACCGTGTTCGGTGACTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 NACGAATTCT CAACTTTGGC GGCCTCTGCT GCTGCTGCGN CGCCAAAGGT CGCATGACGC 
0061 AAAGGCGGTG GAGGCCCCAA TACACAGACC GGTTCCAACC AGTGCCCAGC TGGACGAACT 
0121 GGAGCGGAAT GTGGTTGTGC GCCACCACAA GAACAACGTG CCACTGATAC GCTCTCTCAT 
0181 CCAGGAGTTG GATGCGGGAG ACCAGCACAA GTTGAGGCAG CTGCAGGCGG AACTGGAACA 
0241 GCTGCCCAAT GCCACGCATN CCGCGCCTGC GAGACTACGG AGAGGAGCCG CGGGAACTGG 
0301 CGCAGTATGT CCACCGGCAG TTGACGCCAC AGTCCAGGCT CAAGGAGTTC TCTGAATTAG 
0361 CCCGTGCTCT TAACCTCTAC CGCATGGATC ACTTGGGTAA CTACACTGGC CACAAAAGCT 
0421 ACTACCTTAC TGGCCAGCTG GCAACTTTGG AGCAGGCCAT CATACAATAT GCACTTCAGG 
0481 CAGTCACCGA ACACGGTTTT A 
 in silico PCR Fragment
0001 GACGAATTCT CAACTTTGGC GGCCTCTGCT GCTGCTGCGC CGCCAAAGGT CGCATGACGC 
0061 AAAGGCGGTG GAGGCCCCAA TACACAGACC GGTTCCAACC AGTGCCCAGC TGGACGAACT 
0121 GGAGCGGAAC GTGGTTGTGC GCCACCACAA GAACAACGTG CCACTGATAC GCTCTCTCAT 
0181 CCAGGAGTTG GATGCGGGAG ACCAGCACAA GTTGAGGCAG CTGCAGGCGG AACTGGAACA 
0241 GCTGCCCAAT GCCACGCAT- CCGCGCCTGC GAGACTACGG AGAGGAGCCG CGGGAACTGG 
0301 CGCAGTATGT CCACCGGCAG TTGACGCCAC AGTCCAGGCT CAAGGAGTTC TCTGAATTAG 
0361 CCCGTGCTCT TAACCTCTAC CGCATGGATC ACTTGGGTAA CTACACTGGC CACAAAAGCT 
0421 ACTACCTTAC TGGCCAGCTG GCAACTTTGG AGCAGGCCAT CATACAATAT GCACTTCAGG 
0481 CAGTCACCGA ACACGGTTTT A 
 Assemble Data

4938R-2.IR_full        1   ACGAATTCTCAACTTTGGCGGCCTCTGCTGCTGCTGCGNCGCCAAAGGTCGCATGACGC 59
                           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
4938R-2.in silico      1   ACGAATTCTCAACTTTGGCGGCCTCTGCTGCTGCTGCGCCGCCAAAGGTCGCATGACGC 59


4938R-2.IR_full       61  AAAGGCGGTGGAGGCCCCAATACACAGACCGGTTCCAACCAGTGCCCAGCTGGACGAACT 119
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4938R-2.in silico     61  AAAGGCGGTGGAGGCCCCAATACACAGACCGGTTCCAACCAGTGCCCAGCTGGACGAACT 119


4938R-2.IR_full       121 GGAGCGGAATGTGGTTGTGCGCCACCACAAGAACAACGTGCCACTGATACGCTCTCTCAT 179
                          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
4938R-2.in silico     121 GGAGCGGAACGTGGTTGTGCGCCACCACAAGAACAACGTGCCACTGATACGCTCTCTCAT 179


4938R-2.IR_full       181 CCAGGAGTTGGATGCGGGAGACCAGCACAAGTTGAGGCAGCTGCAGGCGGAACTGGAACA 239
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4938R-2.in silico     181 CCAGGAGTTGGATGCGGGAGACCAGCACAAGTTGAGGCAGCTGCAGGCGGAACTGGAACA 239


4938R-2.IR_full       241 GCTGCCCAATGCCACGCATNCCGCGCCTGCGAGACTACGGAGAGGAGCCGCGGGAACTGG 299
                          ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
4938R-2.in silico     241 GCTGCCCAATGCCACGCAT-CCGCGCCTGCGAGACTACGGAGAGGAGCCGCGGGAACTGG 299


4938R-2.IR_full       301 CGCAGTATGTCCACCGGCAGTTGACGCCACAGTCCAGGCTCAAGGAGTTCTCTGAATTAG 359
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4938R-2.in silico     301 CGCAGTATGTCCACCGGCAGTTGACGCCACAGTCCAGGCTCAAGGAGTTCTCTGAATTAG 359


4938R-2.IR_full       361 CCCGTGCTCTTAACCTCTACCGCATGGATCACTTGGGTAACTACACTGGCCACAAAAGCT 419
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4938R-2.in silico     361 CCCGTGCTCTTAACCTCTACCGCATGGATCACTTGGGTAACTACACTGGCCACAAAAGCT 419


4938R-2.IR_full       421 ACTACCTTACTGGCCAGCTGGCAACTTTGGAGCAGGCCATCATACAATATGCACTTCAGG 479
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4938R-2.in silico     421 ACTACCTTACTGGCCAGCTGGCAACTTTGGAGCAGGCCATCATACAATATGCACTTCAGG 479


4938R-2.IR_full       481 CAGTCACCGAACACGGTTTTA 500
                          |||||||||||||||||||||
4938R-2.in silico     481 CAGTCACCGAACACGGTTTTA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_079641.2  CG4938-RA (Aats-ser), mRNA 
0.82   51  NM_080376.1  CG8118-RA, transcript variant A (mam), mRNA 
0.82   51  NM_166030.1  CG8118-RB, transcript variant B (mam), mRNA 
0.2   NM_132573.1  CG17788-RA (CG17788), mRNA 
0.2   NM_143242.2  CG6420-RA (CG6420), mRNA 
0   12  NM_137701.2  CG4030-RA (CG4030), mRNA 
0   10  12  NM_132479.2  CG1597-RA (CG1597), mRNA 
0   NM_079253.3  CG6494-RA, transcript variant A (h), mRNA 
0   NM_001014577.1  CG6494-RB, transcript variant B (h), mRNA 
0   NM_165630.1  CG8266-RB, transcript variant B (sec31), mRNA 
0   NM_136570.2  CG8266-RA, transcript variant A (sec31), mRNA 
0   31  NM_001038742.1  CG6824-RD, transcript variant D (ovo), mRNA 
0   31  NM_080338.3  CG6824-RA, transcript variant A (ovo), mRNA 
0   23  NM_167026.2  CG6824-RB, transcript variant B (ovo), mRNA 
0   23  NM_167027.2  CG6824-RC, transcript variant C (ovo), mRNA 
0   41  NM_001038734.1  CG16902-RC (Hr4), mRNA 
0   10  NM_079561.2  CG9755-RC, transcript variant C (pum), mRNA 
0   10  NM_169259.1  CG9755-RD, transcript variant D (pum), mRNA 
0   10  NM_169258.1  CG9755-RA, transcript variant A (pum), mRNA 
0   NM_078762.4  CG9088-RA, transcript variant A (lid), mRNA 
0   NM_164671.1  CG9088-RB, transcript variant B (lid), mRNA 
0   NM_176427.1  CG9755-RE, transcript variant E (pum), mRNA 
0   NM_169260.1  CG9755-RB, transcript variant B (pum), mRNA 
0   NM_141300.1  CG2919-RA (CG2919), mRNA 
0   32  NM_132413.1  CG15295-RA (CG15295), mRNA 
0   16  NM_141937.1  CG17202-RA (CG17202), mRNA 
0   NM_057215.3  CG4807-RB, transcript variant B (ab), mRNA 
0   NM_057214.3  CG4807-RA, transcript variant A (ab), mRNA 
0   15  NM_131968.2  CG32772-RA (CG32772), mRNA 
0   13  NM_166057.1  CG8787-RA, transcript variant A (Asx), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
DC
DM
++ 
VM
++ 
VB
 
Caspase-3 signal
N
++ 
DB
++ 
DC
++ 
DM
++ 
VM
++ 
VB
 
Dcompartment   Penetrance
 

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