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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4877R-2 
 Symbol CG4877  Full Name CG4877 
 CG No CG4877  Old CG No CG4877 
 Synonyms CG4689, CG4877 
 Accession No (Link to NCBI) NM_168664.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGAGATCTACGACTCCTCCAA 
 Primer Seq. 3'
aatctagaggtaccGACTACGACTGCGACTGCAAC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGAGATCTAC GACTCCTCCA ATTCGCAGCT AAGTAGCGAC GAGTATAGCC ACGAGGAGGA 
0061 GGAATACGAC GCTCTAATGG ACGCGGCGGT GAGCAAGCAA CGACCCCAAA AGACAAAATC 
0121 CAAGGGATCC GAGTCCCAGA AACCCGGAAA TGGAGCTCCA GAATCGGCGG CTGCCACTGA 
0181 GAAAAATGAA AAGCCAGATG ACGATNGCGG TGCCACCTTC CACGCGCTCA GAAACAATTC 
0241 GGCGGATCCG GCAATTGCAG TTACAGCGTG GCAGGCTGCC CAATCTTTAC TTCAANGCGT 
0301 CGCAGTATTC GTTGGCTGCG ACCCAATAAA ATGGACTACA ACAGCTATTT TGACGGCCTG 
0361 AAGGACTTGC TGCCCAAGCG TAAATTGAAG CACCTGGTTC GCTTCCATGA CAGGCAGCGC 
0421 AGAACCTACG ACAGCAGGAG CATCAGTCGT AGTCGCAGCC ACAGCCGCAG TCTTAGCCGA 
0481 AGTTGCAGTC GCAGTCGTAG TC 
 in silico PCR Fragment
0001 CGAGATCTAC GACTCCTCCA ATTCGCAGCT AAGTAGCGAC GAGTATAGCC ACGAGGAGGA 
0061 GGAATACGAC GCTCTAATGG ACGCGGCGGT GAGCAAGCAA CGACCCCAAA AGACAAAATC 
0121 CAAGGGATCC GAGTCCGAGA AACCCGGAAA TGGAGCTCCA GAATCGGCGG CTGCCACTGA 
0181 GAAAAATGAA AAGCCAGATG ACGAT-GCGG TGCCACCTTC CACGCGCTCA GAAACAATTC 
0241 GGCGGATCCG GCAATTGCAG TTACAGCGTG GCAGGCTGCC CAATCTTTAC TTCAA-GCGT 
0301 CGCAGTATTC GTTGGCTGCG ACCCAATAAA ATGGACTACA ACAGCTATTT TGACGGCCTG 
0361 AAGGACTTGC TGCCCAAGCG TAAATTGAAG CACCTGGTTC GCTTCCATGA CAGGCAGCGC 
0421 AGAACCTACG ACAGCAGGAG CATCAGTCGT AGTCGCAGCC ACAGCCGCAG TCTTAGCCGA 
0481 AGTTGCAGTC GCAGTCGTAG TC 
 Assemble Data

4877R-2.IR_full       1   CGAGATCTACGACTCCTCCAATTCGCAGCTAAGTAGCGACGAGTATAGCCACGAGGAGGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4877R-2.in silico     1   CGAGATCTACGACTCCTCCAATTCGCAGCTAAGTAGCGACGAGTATAGCCACGAGGAGGA 60


4877R-2.IR_full       61  GGAATACGACGCTCTAATGGACGCGGCGGTGAGCAAGCAACGACCCCAAAAGACAAAATC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4877R-2.in silico     61  GGAATACGACGCTCTAATGGACGCGGCGGTGAGCAAGCAACGACCCCAAAAGACAAAATC 120


4877R-2.IR_full       121 CAAGGGATCCGAGTCCCAGAAACCCGGAAATGGAGCTCCAGAATCGGCGGCTGCCACTGA 180
                          |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
4877R-2.in silico     121 CAAGGGATCCGAGTCCGAGAAACCCGGAAATGGAGCTCCAGAATCGGCGGCTGCCACTGA 180


4877R-2.IR_full       181 GAAAAATGAAAAGCCAGATGACGATNGCGGTGCCACCTTCCACGCGCTCAGAAACAATTC 240
                          ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
4877R-2.in silico     181 GAAAAATGAAAAGCCAGATGACGAT-GCGGTGCCACCTTCCACGCGCTCAGAAACAATTC 240


4877R-2.IR_full       241 GGCGGATCCGGCAATTGCAGTTACAGCGTGGCAGGCTGCCCAATCTTTACTTCAANGCGT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
4877R-2.in silico     241 GGCGGATCCGGCAATTGCAGTTACAGCGTGGCAGGCTGCCCAATCTTTACTTCAA-GCGT 300


4877R-2.IR_full       301 CGCAGTATTCGTTGGCTGCGACCCAATAAAATGGACTACAACAGCTATTTTGACGGCCTG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4877R-2.in silico     301 CGCAGTATTCGTTGGCTGCGACCCAATAAAATGGACTACAACAGCTATTTTGACGGCCTG 360


4877R-2.IR_full       361 AAGGACTTGCTGCCCAAGCGTAAATTGAAGCACCTGGTTCGCTTCCATGACAGGCAGCGC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4877R-2.in silico     361 AAGGACTTGCTGCCCAAGCGTAAATTGAAGCACCTGGTTCGCTTCCATGACAGGCAGCGC 420


4877R-2.IR_full       421 AGAACCTACGACAGCAGGAGCATCAGTCGTAGTCGCAGCCACAGCCGCAGTCTTAGCCGA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4877R-2.in silico     421 AGAACCTACGACAGCAGGAGCATCAGTCGTAGTCGCAGCCACAGCCGCAGTCTTAGCCGA 480


4877R-2.IR_full       481 AGTTGCAGTCGCAGTCGTAGTC 502
                          ||||||||||||||||||||||
4877R-2.in silico     481 AGTTGCAGTCGCAGTCGTAGTC 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_140632.2  CG4877-RB, transcript variant B (CG4877), mRNA 
100   482  NM_168664.1  CG4877-RA, transcript variant A (CG4877), mRNA 
0.62   NM_136977.2  CG17575-RA (CG17575), mRNA 
0.2   NM_168288.1  CG32029-RA (CG32029), mRNA 
0   NM_141134.1  CG11440-RA (CG11440), mRNA 
0   NM_168554.1  CG32130-RD, transcript variant D (stv), mRNA 
0   NM_168552.1  CG32130-RC, transcript variant C (stv), mRNA 
0   NM_168553.1  CG32130-RB, transcript variant B (stv), mRNA 
0   NM_168551.1  CG32130-RA, transcript variant A (stv), mRNA 
0   NM_137978.1  CG18128-RA (CG18128), mRNA 
0   NM_001043286.1  CG6383-RB, transcript variant B (crb), mRNA 
0   NM_079756.2  CG6383-RA, transcript variant A (crb), mRNA 
0   11  15  NM_132245.1  CG1387-RA (CG1387), mRNA 
0   NM_136485.2  CG30377-RA (CG30377), mRNA 
0   NM_142359.2  CG31256-RA (Brf), mRNA 
0   NM_142370.1  CG5873-RA (CG5873), mRNA 
0   NM_167281.1  CG1725-RF, transcript variant F (dlg1), mRNA 
0   NM_206683.2  CG1725-RB, transcript variant B (dlg1), mRNA 
0   NM_001043088.1  CG10956-RB (CG10956), mRNA 
0   NM_078774.3  CG13778-RA, transcript variant A (Mnn1), mRNA 
0   NM_001042877.1  CG13778-RC, transcript variant C (Mnn1), mRNA 
0   NM_206681.2  CG1725-RH, transcript variant H (dlg1), mRNA 
0   NM_206679.1  CG1725-RJ, transcript variant J (dlg1), mRNA 
0   NM_206680.1  CG1725-RI, transcript variant I (dlg1), mRNA 
0   NM_167280.1  CG1725-RC, transcript variant C (dlg1), mRNA 
0   NM_206147.1  CG9635-RE, transcript variant E (RhoGEF2), mRNA 
0   NM_206146.1  CG9635-RF, transcript variant F (RhoGEF2), mRNA 
0   NM_057969.3  CG9635-RD, transcript variant D (RhoGEF2), mRNA 
0   NM_166790.2  CG32019-RA, transcript variant A (bt), mRNA 
0   NM_205877.1  CG32019-RD, transcript variant D (bt), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
++ 
DC
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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