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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4842R-2 
 Symbol CG4842  Full Name CG4842 
 CG No CG4842  Old CG No CG4842 
 Synonyms CG4842 
 Accession No (Link to NCBI) NM_140628.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTACCTTGGCGGATTCGGTGGA 
 Primer Seq. 3'
aatctagaggtaccCCTACACCAGAGTGGGCGTAA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TACCTTGGCG GATTCGGTGG AATAGGCCAA AAATGTGTGC AAGAACTGCT CCAGCGACCA 
0061 ATAAAGGCTC TAGCCATTTT CGATCTAAAT GCTAATGAGC AGCTCTTGGC TAAGTGGAAA 
0121 AGCCAGCATC CCGATACGGA CATCTTCTAC CACAAGCTGG ACATAACCCA GAAATCGGAT 
0181 ATANGACGCG GCCTACAAGG CGACCGCCGA GAGATTCGGA CACTTCGATG TGGTGGTCAA 
0241 TGGCAGTGGA CTGATGAACG ATCGCCTGGT CGAACTCACT ATTCAAATTA ATCTGCTGGG 
0301 AGTTATCAAC AGCACTTTGA CCGCCTTGGA GTACATGGAC AAGGCCAAAG GCGGAAAGGG 
0361 TGGGCTCATA GTGAATATAT CATCGGTGGC TGGACTGCAG CCCACAGCTA TAATGGCCAT 
0421 TTACTCGGCG GCCAAGACGG GAGTTACCAC ATTCACCAGA GCCATGGCTA ACCCCTACTT 
0481 TTACGCCCAC TCTGGTGTAG G 
 in silico PCR Fragment
0001 TACCTTGGCG GATTCGGTGG AATAGGCCAA AAATGTGTGC AAGAACTGCT CCAGCGACCA 
0061 ATAAAGGCTC TAGCCATTTT CGATCTAAAT GCTAATGAGC AGCTCTTGGC TAAGTGGAAA 
0121 AGCCAGCATC CCGATACGGA CGTCTTCTAC CACAAGCTGG ACATAACCCA GAAATCGGAT 
0181 ATA-GACGCG GCCTACAAGG CGACCGCCGA GAGATTCGGA CACTTCGATG TGGTGGTCAA 
0241 TGGCAGTGGA CTGATGAACG ATCGCCTGGT CGAACTCACT ATTCAAATTA ATCTGCTGGG 
0301 AGTTATCAAC AGCACTTTGA CCGCCTTGGA GTACATGGAC AAGGCCAAAG GCGGAAAGGG 
0361 TGGGCTCATA GTGAATATAT CATCGGTGGC TGGACTGCAG CCCACAGCTA TAATGGCCAT 
0421 TTACTCGGCG GCCAAGACGG GAGTTACCAC ATTCACCAGA GCCATGGCTA ACCCCTACTT 
0481 TTACGCCCAC TCTGGTGTAG G 
 Assemble Data

4842R-2.IR_full       1   TACCTTGGCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGACCA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4842R-2.in silico     1   TACCTTGGCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGACCA 60


4842R-2.IR_full       61  ATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTTGGCTAAGTGGAAA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4842R-2.in silico     61  ATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTTGGCTAAGTGGAAA 120


4842R-2.IR_full       121 AGCCAGCATCCCGATACGGACATCTTCTACCACAAGCTGGACATAACCCAGAAATCGGAT 180
                          ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
4842R-2.in silico     121 AGCCAGCATCCCGATACGGACGTCTTCTACCACAAGCTGGACATAACCCAGAAATCGGAT 180


4842R-2.IR_full       181 ATANGACGCGGCCTACAAGGCGACCGCCGAGAGATTCGGACACTTCGATGTGGTGGTCAA 240
                          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4842R-2.in silico     181 ATA-GACGCGGCCTACAAGGCGACCGCCGAGAGATTCGGACACTTCGATGTGGTGGTCAA 240


4842R-2.IR_full       241 TGGCAGTGGACTGATGAACGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4842R-2.in silico     241 TGGCAGTGGACTGATGAACGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGG 300


4842R-2.IR_full       301 AGTTATCAACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAGGG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4842R-2.in silico     301 AGTTATCAACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAGGG 360


4842R-2.IR_full       361 TGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGCTATAATGGCCAT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4842R-2.in silico     361 TGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGCTATAATGGCCAT 420


4842R-2.IR_full       421 TTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCAGAGCCATGGCTAACCCCTACTT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4842R-2.in silico     421 TTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCAGAGCCATGGCTAACCCCTACTT 480


4842R-2.IR_full       481 TTACGCCCACTCTGGTGTAGG 501
                          |||||||||||||||||||||
4842R-2.in silico     481 TTACGCCCACTCTGGTGTAGG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_140628.1  CG4842-RA (CG4842), mRNA 
2.48   12  33  74  100  NM_144416.1  CG18814-RA (CG18814), mRNA 
0.62   NM_137296.2  CG8306-RA (CG8306), mRNA 
0   NM_057425.2  CG9450-RA (tud), mRNA 
0   NM_206146.1  CG9635-RF, transcript variant F (RhoGEF2), mRNA 
0   NM_206147.1  CG9635-RE, transcript variant E (RhoGEF2), mRNA 
0   NM_057969.3  CG9635-RD, transcript variant D (RhoGEF2), mRNA 
0   NM_206636.1  CG3960-RF, transcript variant F (CG3960), mRNA 
0   NM_079427.2  CG6850-RA (Ugt), mRNA 
0   NM_141639.1  CG16779-RA (CG16779), mRNA 
0   NM_134279.2  CG7734-RB, transcript variant B (shn), mRNA 
0   NM_057376.2  CG7734-RC, transcript variant C (shn), mRNA 
0   NM_206091.1  CG7734-RD, transcript variant D (shn), mRNA 
0   NM_134683.1  CG4297-RA, transcript variant A (CG4297), mRNA 
0   NM_175945.1  CG4297-RB, transcript variant B (CG4297), mRNA 
0   NM_057375.3  CG7734-RA, transcript variant A (shn), mRNA 
0   NM_136826.1  CG7741-RA (CG7741), mRNA 
0   NM_141941.2  CG12276-RA (Aos1), mRNA 
0   NM_137076.1  CG6701-RA (CG6701), mRNA 
0   NM_143462.2  CG1969-RA, transcript variant A (CG1969), mRNA 
0   NM_170422.1  CG1969-RB, transcript variant B (CG1969), mRNA 
0   NM_135876.1  CG4697-RA (CSN1a), mRNA 
0   NM_140943.2  CG32227-RA (CG32227), mRNA 
0   NM_135391.2  CG13095-RA (CG13095), mRNA 
0   NM_137341.1  CG6967-RA, transcript variant A (CG6967), mRNA 
0   NM_166214.1  CG6967-RB, transcript variant B (CG6967), mRNA 
0   NM_136000.2  CG6453-RA (CG6453), mRNA 
0   NM_134626.1  CG17599-RA (CG17599), mRNA 
0   NM_167525.1  CG9802-RB, transcript variant B (Cap), mRNA 
0   NM_078650.2  CG9802-RA, transcript variant A (Cap), mRNA 

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