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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4755R-1 
 Symbol RhoGAP92B  Full Name RhoGAP92B 
 CG No CG4755  Old CG No CG4755 
 Synonyms CG4755, RhoGAP92B 
 Accession No (Link to NCBI) NM_142587.1 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees semi-lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgACCATCGAGAAGATCGTCCGC 
 Primer Seq. 3'
aatctagaggtaccTCGTCCTCTTTGGCAATCAGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ACCATCGAGA AGATCGTCCG CAAGCTGCCG GCGCTGAgcg gCGGAGNNCG NAAGTGGAAG 
0061 CGGGAGCAGC GAGGAGCAGG ACAAGCGGAC CAAGAAGAAC AGTCACTACA AGATTGCCCA 
0121 GGCTCTGGAC GAGTCCGCCA AGGAGCTGCC CAAGGACATG CCGCTGCAGA AGGTCCTCGC 
0181 CAATTGCGGC GAGCTGNGAG AAGACGATGG CCGAGTGCAT CATCGAAAGC GAGCTGGAGA 
0241 CGGAGGCCAA GGTGGTGCGG CGGCTGAAGA ACATCTTGGA CAAGGAGATA CAGGAGATCT 
0301 CCACgCTCAA gCGCAACGTG TCGCGCACCC TGCAGGAGTA TACNCTCgCT GAAGCGCAGC 
0361 CATGAGGCGG CAATCCGTCT GGAGGAACCA GCGGCCAAGG TTAACCACAT CAAGAGCCAG 
0421 CAGGAGGAGT GCGAGCTGAA GCTGGAAAAG GAGCGGGATG CCTGGGCGGC CCAGATGCTG 
0481 GAGCTGATTG CCAAAGAGGA CGA 
 in silico PCR Fragment
0001 ACCATCGAGA AGATCGTCCG CAAGCTGCCG GCGCTGAGCG GCGGAG-GCG GAAGTGGAAG 
0061 CGGGAGCAGC GAGGAGCAGG ACAAGCGGAC CAAGAAGAAC AGTCACTACA AGATTGCCCA 
0121 GGCTCTGGAC GAGTCCGCCA AGGAGCTGCC CAAGGACATG CCGCTGCAGA AGGTCCTCGC 
0181 CAATTGCGGC GAGCTG-GAG AAGACGATGG CCGAGTGCAT CATCGAAAGC GAGCTGGAGA 
0241 CGGAGGCCAA GGTGGTGCGG CGGCTGAAGA ACATCTTGGA CAAGGAGATA CAGGAGATCT 
0301 CCACGCTCAA GCGCAACGTG TCGCGCACCC TGCAGGAGTA TAC-CTCGCT GAAGCGCAGC 
0361 CATGAGGCGG CAATCCGTCT GGAGGAACCA GCGGCCAAGG TTAACCACAT CAAGAGCCAG 
0421 CAGGAGGAGT GCGAGCTGAA GCTGGAAAAG GAGCGGGATG CCTGGGCGGC CCAGATGCTG 
0481 GAGCTGATTG CCAAAGAGGA CGA 
 Assemble Data

4755R-1.IR_full       1   ACCATCGAGAAGATCGTCCGCAAGCTGCCGGCGCTGAGCGGCGGAGNNCGNAAGTGGAAG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||
4755R-1.in silico     1   ACCATCGAGAAGATCGTCCGCAAGCTGCCGGCGCTGAGCGGCGGAG-GCGGAAGTGGAAG 60


4755R-1.IR_full       61  CGGGAGCAGCGAGGAGCAGGACAAGCGGACCAAGAAGAACAGTCACTACAAGATTGCCCA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4755R-1.in silico     61  CGGGAGCAGCGAGGAGCAGGACAAGCGGACCAAGAAGAACAGTCACTACAAGATTGCCCA 120


4755R-1.IR_full       121 GGCTCTGGACGAGTCCGCCAAGGAGCTGCCCAAGGACATGCCGCTGCAGAAGGTCCTCGC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4755R-1.in silico     121 GGCTCTGGACGAGTCCGCCAAGGAGCTGCCCAAGGACATGCCGCTGCAGAAGGTCCTCGC 180


4755R-1.IR_full       181 CAATTGCGGCGAGCTGNGAGAAGACGATGGCCGAGTGCATCATCGAAAGCGAGCTGGAGA 240
                          |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
4755R-1.in silico     181 CAATTGCGGCGAGCTG-GAGAAGACGATGGCCGAGTGCATCATCGAAAGCGAGCTGGAGA 240


4755R-1.IR_full       241 CGGAGGCCAAGGTGGTGCGGCGGCTGAAGAACATCTTGGACAAGGAGATACAGGAGATCT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4755R-1.in silico     241 CGGAGGCCAAGGTGGTGCGGCGGCTGAAGAACATCTTGGACAAGGAGATACAGGAGATCT 300


4755R-1.IR_full       301 CCACGCTCAAGCGCAACGTGTCGCGCACCCTGCAGGAGTATACNCTCGCTGAAGCGCAGC 360
                          ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
4755R-1.in silico     301 CCACGCTCAAGCGCAACGTGTCGCGCACCCTGCAGGAGTATAC-CTCGCTGAAGCGCAGC 360


4755R-1.IR_full       361 CATGAGGCGGCAATCCGTCTGGAGGAACCAGCGGCCAAGGTTAACCACATCAAGAGCCAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4755R-1.in silico     361 CATGAGGCGGCAATCCGTCTGGAGGAACCAGCGGCCAAGGTTAACCACATCAAGAGCCAG 420


4755R-1.IR_full       421 CAGGAGGAGTGCGAGCTGAAGCTGGAAAAGGAGCGGGATGCCTGGGCGGCCCAGATGCTG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4755R-1.in silico     421 CAGGAGGAGTGCGAGCTGAAGCTGGAAAAGGAGCGGGATGCCTGGGCGGCCCAGATGCTG 480


4755R-1.IR_full       481 GAGCTGATTGCCAAAGAGGACGA 503
                          |||||||||||||||||||||||
4755R-1.in silico     481 GAGCTGATTGCCAAAGAGGACGA 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_142587.1  CG4755-RA (RhoGAP92B), mRNA 
0.62   NM_143802.2  CG8013-RA, transcript variant A (Su(z)12), mRNA 
0.62   NM_168826.1  CG8013-RB, transcript variant B (Su(z)12), mRNA 
0.41   NM_167669.1  CG14207-RB, transcript variant B (CG14207), mRNA 
0.41   NM_134482.2  CG14207-RA, transcript variant A (CG14207), mRNA 
0   NM_168398.1  CG32057-RB, transcript variant B (dpr10), mRNA 
0   NM_168397.1  CG32057-RA, transcript variant A (dpr10), mRNA 
0   NM_168399.1  CG32057-RC, transcript variant C (dpr10), mRNA 
0   NM_134686.1  CG11838-RA, transcript variant A (Oseg3), mRNA 
0   NM_205886.1  CG11838-RB, transcript variant B (Oseg3), mRNA 
0   NM_139616.1  CG15007-RA (CG15007), mRNA 
0   13  NM_132831.1  CG8184-RB (CG8184), mRNA 
0   NM_138264.1  CG9173-RA (CG9173), mRNA 
0   NM_057956.2  CG10269-RA (D19A), mRNA 
0   NM_001038858.1  CG8585-RB, transcript variant B (Ih), mRNA 
0   NM_001038859.1  CG8585-RE, transcript variant E (Ih), mRNA 
0   NM_001038856.1  CG8585-RC, transcript variant C (Ih), mRNA 
0   NM_139859.1  CG8563-RA (CG8563), mRNA 
0   16  NM_079908.2  CG5406-RA, transcript variant A (sif), mRNA 
0   16  NM_206278.1  CG5406-RC, transcript variant C (sif), mRNA 
0   NM_167721.1  CG11666-RA (CG11666), mRNA 
0   NM_134722.1  CG14339-RA (CG14339), mRNA 
0   NM_079740.2  CG10370-RA (Tbp-1), mRNA 
0   NM_167161.1  CG2056-RB, transcript variant B (CG2056), mRNA 
0   NM_132264.2  CG2056-RA, transcript variant A (CG2056), mRNA 
0   NM_001038784.1  CG8867-RB, transcript variant B (Jon25Bi), mRNA 
0   NM_078753.2  CG8867-RA, transcript variant A (Jon25Bi), mRNA 
0   11  NM_169253.1  CG11984-RC, transcript variant C (CG11984), mRNA 
0   11  NM_169252.1  CG11984-RA, transcript variant A (CG11984), mRNA 
0   11  NM_141604.2  CG11984-RB, transcript variant B (CG11984), mRNA 

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