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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
4561R-2 |
Symbol |
Aats-tyr |
Full Name |
Tyrosyl-tRNA synthetase |
CG No |
CG4561 |
Old CG No |
CG4561 |
Synonyms |
CG4561, TyrRS, YRS, anon-EST:Posey261, Aats-tyr |
Accession No (Link to NCBI) |
NM_140638.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Storkebaum E, Leitão-Gonçalves R, Godenschwege T, Nangle L, Mejia M, Bosmans I, Ooms T, Jacobs A, Van Dijck P, Yang XL, Schimmel P, Norga K, Timmerman V, Callaerts P, Jordanova A. Dominant mutations in the tyrosyl-tRNA synthetase gene recapitulate in Drosophila features of human Charcot-Marie-Tooth neuropathy. Proc Natl Acad Sci U S A (2009) 106(28) 11782-7
[
PubMed ID = 19561293
]
[
RRC reference
]
Arsham AM, Neufeld TP. A genetic screen in Drosophila reveals novel cytoprotective functions of the autophagy-lysosome pathway. PLoS One (2009) 4(6) e6068
[
PubMed ID = 19562034
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgATGGTCGGAATAACGCCCGCA |
Primer Seq. 3' |
aatctagaggtaccCCAGGATAAAGCAAACCGGAG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 ATGGTCGGAA TAACGCCCGC AGAGAAGAAA GCGCTGATAA CGCgNAATCT GCAGGAGACG
0061 CTCGGCGATG ACAAGCTGAC CAAGATCCTG GCGGAGCGcN ATCTAAAGAT CTACTGGGGA
0121 ACGGCGACGA CGGGCAAGCC ACATGTCGCC TATTTCGTGC CCATGTCGAA GATTGCCGAT
0181 TTCCTGAAGG CAGGATNCGA AGTGACCATC CTGTTCGCCG ATCTCCACGC CTATCTGGAC
0241 AACATGAAGG CACCGTGGTC TCTCCTNGGA GCTGCGAACC AAGTACTACG AACAGGTCAT
0301 CAAGGCCATG TTGANGCTCC ATNGGCGTTC CGCTGGAGAA ACTGAAGTTC GTCAAGGGCA
0361 GCGACTATCA GCTGTCCAAG GAGTACACCC TGGATGTATA CAAGCTCAGC TCCGTGGTCA
0421 CGCAACACGA TGCCAAGAAg GCGGGCGCAG AGGTGGTCAA ACAGGTGGAG TACCCACTGC
0481 TCTCCGGTTT GCTTTATCCT GG |
in silico PCR Fragment |
0001 ATGGTCGGAA TAACGCCCGC AGAGAAGAAA GCGCTGATAA CGCGCAATCT GCAGGAGACG
0061 CTCGGCGATG ACAAGCTGAC CAAGATCCTG GCGGAGCGCG ATCTAAAGAT CTACTGGGGA
0121 ACGGCGACGA CGGGCAAGCC ACATGTCGCC TATTTCGTGC CCATGTCGAA GATTGCCGAT
0181 TTCCTGAAGG CAGGATGCGA AGTGACCATC CTGTTCGCCG ATCTCCACGC CTATCTGGAC
0241 AACATGAAGG CACCGTGGTC TCTCCT-GGA GCTGCGAACC AAGTACTACG AACAGGTCAT
0301 CAAGGCCATG TTGA-GCTCC ATCGGCGTTC CGCTGGAGAA ACTGAAGTTC GTCAAGGGCA
0361 GCGACTATCA GCTGTCCAAG GAGTACACCC TGGATGTATA CAAGCTCAGC TCCGTGGTCA
0421 CGCAACACGA TGCCAAGAAG GCGGGCGCAG AGGTGGTCAA ACAGGTGGAG TACCCACTGC
0481 TCTCCGGTTT GCTTTATCCT GG |
Assemble Data |
4561R-2.IR_full 1 ATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGCTGATAACGCGNAATCTGCAGGAGACG 60
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4561R-2.in silico 1 ATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGCTGATAACGCGCAATCTGCAGGAGACG 60
4561R-2.IR_full 61 CTCGGCGATGACAAGCTGACCAAGATCCTGGCGGAGCGCNATCTAAAGATCTACTGGGGA 120
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4561R-2.in silico 61 CTCGGCGATGACAAGCTGACCAAGATCCTGGCGGAGCGCGATCTAAAGATCTACTGGGGA 120
4561R-2.IR_full 121 ACGGCGACGACGGGCAAGCCACATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGAT 180
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4561R-2.in silico 121 ACGGCGACGACGGGCAAGCCACATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGAT 180
4561R-2.IR_full 181 TTCCTGAAGGCAGGATNCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTATCTGGAC 240
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4561R-2.in silico 181 TTCCTGAAGGCAGGATGCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTATCTGGAC 240
4561R-2.IR_full 241 AACATGAAGGCACCGTGGTCTCTCCTNGGAGCTGCGAACCAAGTACTACGAACAGGTCAT 300
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4561R-2.in silico 241 AACATGAAGGCACCGTGGTCTCTCCT-GGAGCTGCGAACCAAGTACTACGAACAGGTCAT 300
4561R-2.IR_full 301 CAAGGCCATGTTGANGCTCCATNGGCGTTCCGCTGGAGAAACTGAAGTTCGTCAAGGGCA 360
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4561R-2.in silico 301 CAAGGCCATGTTGA-GCTCCATCGGCGTTCCGCTGGAGAAACTGAAGTTCGTCAAGGGCA 360
4561R-2.IR_full 361 GCGACTATCAGCTGTCCAAGGAGTACACCCTGGATGTATACAAGCTCAGCTCCGTGGTCA 420
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4561R-2.in silico 361 GCGACTATCAGCTGTCCAAGGAGTACACCCTGGATGTATACAAGCTCAGCTCCGTGGTCA 420
4561R-2.IR_full 421 CGCAACACGATGCCAAGAAGGCGGGCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGC 480
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4561R-2.in silico 421 CGCAACACGATGCCAAGAAGGCGGGCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGC 480
4561R-2.IR_full 481 TCTCCGGTTTGCTTTATCCTGG 502
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4561R-2.in silico 481 TCTCCGGTTTGCTTTATCCTGG 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_140638.2 |
CG4561-RA (Aats-tyr), mRNA |
0.2 |
1 |
3 |
2 |
3 |
NM_136976.1 |
CG17577-RA (Cyp9h1), mRNA |
0 |
0 |
4 |
3 |
3 |
NM_168056.1 |
CG14994-RC, transcript variant C (Gad1), mRNA |
0 |
0 |
4 |
3 |
3 |
NM_079190.2 |
CG14994-RA, transcript variant A (Gad1), mRNA |
0 |
0 |
4 |
3 |
3 |
NM_168055.1 |
CG14994-RB, transcript variant B (Gad1), mRNA |
0 |
0 |
2 |
5 |
2 |
NM_079554.2 |
CG7954-RA, transcript variant A (stck), mRNA |
0 |
0 |
2 |
5 |
2 |
NM_169220.1 |
CG7954-RB, transcript variant B (stck), mRNA |
0 |
0 |
2 |
5 |
2 |
NM_169221.1 |
CG7954-RC, transcript variant C (stck), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_134993.1 |
CG15440-RA (CG15440), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_142244.1 |
CG4546-RA (CG4546), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_140898.3 |
CG32217-RA (Su(Tpl)), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_136983.2 |
CG17019-RA (CG17019), mRNA |
0 |
0 |
1 |
7 |
4 |
NM_137205.2 |
CG8195-RA (CG8195), mRNA |
0 |
0 |
1 |
6 |
4 |
NM_170304.1 |
CG31075-RA (CG31075), mRNA |
0 |
0 |
1 |
6 |
2 |
NM_140358.1 |
CG10748-RA (CG10748), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_137455.4 |
CG10915-RA (CG10915), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_079643.1 |
CG5178-RA (Act88F), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_138010.3 |
CG16783-RA (fzr2), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_134967.2 |
CG3980-RB, transcript variant B (CG3980), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_164563.2 |
CG3980-RA, transcript variant A (CG3980), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_134531.2 |
CG9577-RA (CG9577), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_079679.2 |
CG5557-RA (sqz), mRNA |
0 |
0 |
0 |
7 |
4 |
NM_078815.2 |
CG6098-RA (Lrr47), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_165737.1 |
CG2269-RB, transcript variant B (CG2269), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_165738.1 |
CG2269-RC, transcript variant C (CG2269), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_136709.2 |
CG2269-RA, transcript variant A (CG2269), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_136192.2 |
CG2508-RA (cdc23), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_136154.1 |
CG10631-RA (CG10631), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_137707.2 |
CG30388-RA (Magi), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_001032233.1 |
CG13203-RB, transcript variant B (CG13203), mRNA |
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