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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4523R-4 
 Symbol Pink1  Full Name PTEN-induced putative kinase 1 
 CG No CG4523  Old CG No CG4523 
 Synonyms CG4523, dPINK1, BEST:GH23468, Pink1, PINK1, pink1 
 Accession No (Link to NCBI) NM_132112.3 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354 [ PubMed ID = 29764959 ] [ RRC reference ]

Min B, Kwon YC, Choe KM, Chung KC.
PINK1 phosphorylates transglutaminase 2 and blocks its proteasomal degradation.
J Neurosci Res (2015) 93(5) 722-35 [ PubMed ID = 25557247 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGAGACTGCTGACCGTGCGACT 
 Primer Seq. 3'
aatctagaggtaccTAGCTGCCTCCCGAATCTCCC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 NAGACTGCTG ACCGTGCGAC TGATCAAACA TGGTCGCTAC ATTTTGCGCA GCTATTGTAA 
0061 ACGTGATATA CACGCCAACA TTTTGGACCA GAATCAATTG AAGACAAGAA GCAAGCGAGG 
0121 CTTTCCCCTA CCCTCCACCG CTGCCAATGT GCTGCGGACN AACGCCCCAG CAGGCGGCCN 
0181 AAATCGGTGG TCAATGTAGT GCCCCGCACC ATCAACTCCC CGTCGGGATC GCCGTTTAAT 
0241 GGCAGCGGCA GTAGCCCCAC CAGCAGCAGT GGAATCTTCC GAGTGGGCCA GCATGCGCGC 
0301 NAAATTGTTC ATCGACAACA TCCTCAGCCg GGTGACCACC ACCTACTCGG AGGAtcTNCG 
0361 CCANCGCGCT ACNCGCAAGC TATTCTTTgG CGATTCAGCG CCCTTCTTCG CCCTGATTGG 
0421 CGTTAGTCTG GcCTCCGGAT CGGGTGTGCT CAGCAAGGAG GATGAACTGG AGGGCGTGTG 
0481 CTGGGAGATT CGGGAGGCAG CTA 
 in silico PCR Fragment
0001 GAGACTGCTG ACCGTGCGAC TGATCAAACA TGGTCGCTAC ATTTTGCGCA GCTATTGTAA 
0061 ACGTGATATA CACGCCAACA TTTTGGACCA GAATCAATTG AAGACAAGAA GCAAGCGAGG 
0121 CTTTCCCCTA CCCTCCACCG CTGCCAATGT GCTGCGGAC- AACGCCCCAG CAGGCGGCC- 
0181 AAATCGGTGG TCAATGTAGT GCCCCGCACC ATCAACTCCC CGTCGGGATC ACCGTTTAAT 
0241 GGCAGCGGCA GTAGCCCCAC CAGCAGCAGT GGAATCTTCC GAGTGGGCCA GCATGCGCGC 
0301 -AAATTGTTC ATCGACAACA TCCTCAGCCG GGTGACCACC ACCTACTCGG AGGATCTGCG 
0361 CCAGCGCGCT ACCCGCAAGC TATTCTTTGG CGATTCAGCG CCCTTCTTCG CCCTGATTGG 
0421 CGTTAGTCTG GCCTCCGGAT CGGGTGTGCT CAGCAAGGAG GATGAACTGG AGGGCGTGTG 
0481 CTGGGAGATT CGGGAGGCAG CTA 
 Assemble Data

4523R-4.IR_full        1   AGACTGCTGACCGTGCGACTGATCAAACATGGTCGCTACATTTTGCGCAGCTATTGTAA 59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4523R-4.in silico      1   AGACTGCTGACCGTGCGACTGATCAAACATGGTCGCTACATTTTGCGCAGCTATTGTAA 59


4523R-4.IR_full       61  ACGTGATATACACGCCAACATTTTGGACCAGAATCAATTGAAGACAAGAAGCAAGCGAGG 119
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4523R-4.in silico     61  ACGTGATATACACGCCAACATTTTGGACCAGAATCAATTGAAGACAAGAAGCAAGCGAGG 119


4523R-4.IR_full       121 CTTTCCCCTACCCTCCACCGCTGCCAATGTGCTGCGGACNAACGCCCCAGCAGGCGGCCN 179
                          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
4523R-4.in silico     121 CTTTCCCCTACCCTCCACCGCTGCCAATGTGCTGCGGAC-AACGCCCCAGCAGGCGGCC- 179


4523R-4.IR_full       181 AAATCGGTGGTCAATGTAGTGCCCCGCACCATCAACTCCCCGTCGGGATCGCCGTTTAAT 239
                          |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
4523R-4.in silico     181 AAATCGGTGGTCAATGTAGTGCCCCGCACCATCAACTCCCCGTCGGGATCACCGTTTAAT 239


4523R-4.IR_full       241 GGCAGCGGCAGTAGCCCCACCAGCAGCAGTGGAATCTTCCGAGTGGGCCAGCATGCGCGC 299
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4523R-4.in silico     241 GGCAGCGGCAGTAGCCCCACCAGCAGCAGTGGAATCTTCCGAGTGGGCCAGCATGCGCGC 299


4523R-4.IR_full        301 AAATTGTTCATCGACAACATCCTCAGCCGGGTGACCACCACCTACTCGGAGGATCTNCG 358
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
4523R-4.in silico      301 AAATTGTTCATCGACAACATCCTCAGCCGGGTGACCACCACCTACTCGGAGGATCTGCG 358


4523R-4.IR_full       361 CCANCGCGCTACNCGCAAGCTATTCTTTGGCGATTCAGCGCCCTTCTTCGCCCTGATTGG 418
                          ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
4523R-4.in silico     361 CCAGCGCGCTACCCGCAAGCTATTCTTTGGCGATTCAGCGCCCTTCTTCGCCCTGATTGG 418


4523R-4.IR_full       421 CGTTAGTCTGGCCTCCGGATCGGGTGTGCTCAGCAAGGAGGATGAACTGGAGGGCGTGTG 478
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4523R-4.in silico     421 CGTTAGTCTGGCCTCCGGATCGGGTGTGCTCAGCAAGGAGGATGAACTGGAGGGCGTGTG 478


4523R-4.IR_full       481 CTGGGAGATTCGGGAGGCAGCTA 501
                          |||||||||||||||||||||||
4523R-4.in silico     481 CTGGGAGATTCGGGAGGCAGCTA 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_001031878.1  CG4523-RH, transcript variant H (Pink1), mRNA 
100   482  NM_001031879.1  CG4523-RG, transcript variant G (Pink1), mRNA 
100   482  NM_001031880.1  CG4523-RF, transcript variant F (Pink1), mRNA 
100   482  NM_001031881.1  CG4523-RE, transcript variant E (Pink1), mRNA 
100   482  NM_001031883.1  CG4523-RC, transcript variant C (Pink1), mRNA 
100   482  NM_132112.3  CG4523-RA, transcript variant A (Pink1), mRNA 
100   482  NM_167083.2  CG4523-RB, transcript variant B (Pink1), mRNA 
100   482  NM_001031882.1  CG4523-RD, transcript variant D (Pink1), mRNA 
0   28  35  46  NM_169134.1  CG31556-RA (CG31556), mRNA 
0   11  11  NM_001043262.1  CG34157-RE, transcript variant E (Dys), mRNA 
0   11  10  NM_001043257.1  CG34157-RH, transcript variant H (Dys), mRNA 
0   11  NM_001043256.1  CG34157-RB, transcript variant B (Dys), mRNA 
0   11  NM_001043260.1  CG34157-RD, transcript variant D (Dys), mRNA 
0   11  NM_001043261.1  CG34157-RG, transcript variant G (Dys), mRNA 
0   11  NM_001043263.1  CG34157-RF, transcript variant F (Dys), mRNA 
0   11  NM_001043258.1  CG34157-RA, transcript variant A (Dys), mRNA 
0   11  NM_001043259.1  CG34157-RC, transcript variant C (Dys), mRNA 
0   NM_141661.1  CG8312-RA, transcript variant A (CG8312), mRNA 
0   NM_137150.2  CG10209-RA (CG10209), mRNA 
0   NM_137622.2  CG11788-RA (CG11788), mRNA 
0   NM_135661.2  CG6509-RB, transcript variant B (CG6509), mRNA 
0   NM_164967.1  CG6509-RA, transcript variant A (CG6509), mRNA 
0   NM_135184.2  CG9528-RA (retm), mRNA 
0   11  NM_137992.1  CG5549-RA (CG5549), mRNA 
0   NM_169706.1  CG4006-RA, transcript variant A (Akt1), mRNA 
0   NM_169707.1  CG4006-RB, transcript variant B (Akt1), mRNA 
0   NM_169705.1  CG4006-RC, transcript variant C (Akt1), mRNA 
0   NM_134625.2  CG17600-RA, transcript variant A (CG17600), mRNA 
0   NM_167787.1  CG17600-RB, transcript variant B (CG17600), mRNA 
0   NM_142682.1  CG3421-RA (RhoGAP93B), mRNA 

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