Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
4107R-1 |
Symbol |
Pcaf |
Full Name |
Pcaf |
CG No |
CG4107 |
Old CG No |
CG4107 |
Synonyms |
dGcn5, dmGCN5, GCN5, PCAF, Gcn5, P/CAF, dmHAG401, gcn5, CG4107, dGCN5, Gcn5/PCAF, dGCN5 HAT, p/CAF, dPCAF, anon-WO0172774.89, Pcaf, Gcn5/Pcaf |
Accession No (Link to NCBI) |
NM_140329.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Ma Y, Chen Z, Jin Y, Liu W. Identification of a histone acetyltransferase as a novel regulator of Drosophila intestinal stem cells. FEBS Lett (2013) 587(10) 1489-95
[
PubMed ID = 23535028
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAGGCAGCGAATGGCGCAGCAA |
Primer Seq. 3' |
aatctagaggtaccGCACTGGCGCAGCAAACGGAA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AGGCAGCGAA TGGCGCAGCA ACCGCTGGTG CATCTGGAGC CGCTgGCAGC GcCCAGAATC
0061 CAGGACACGG AGGAGCTGCG TCCGGCGCTG GCAGTGTGCc gGCAGAGGGA ACGCGCCAGA
0121 ACAGCCTCAC AGCGCATTCA GCAGCGAAAA GCAAAAGGTC TTCAATCTGC CCGTGCCACA
0181 GAAACTGGCC AAATTGTCGA TGTATTCCGC CTGCCAGTCT GAGGGGATGC CGTTGCACCG
0241 GCTGGAAGAC ACCGCAGGAA AATCGCCACC GTGACGTCGA GTCCTCCTAC TGTCCGGAGT
0301 TCAACGAGGA GTGCCGCAAC ACCAGCTGTC GCCATTCGCT GAGATCGCAC ATAGCCCATC
0361 TGGACAATAT ATCCAGTTCC AGCATGAACG AGCTACTGGG CGCCATTATA GACATGGAGA
0421 ACCTATTCAT GTCCATGCAG CGCGTCGAGG ACGAGGACAC CAAGAAGGTG TACCAGTACC
0481 TCTTCCGTTT gcTGCGCCAG TCGGC |
in silico PCR Fragment |
0001 AGGCAGCGAA TGGCGCAGCA ACCGCTGGTG CATCTGGAGC CGCTGGCAGC GCCCAGAATC
0061 CAGGACACGG AGGAGCTGCG TCCGGCGCTG GCAGTGTGCC GGCAGAGGGA ACGCGCCAGA
0121 ACAGCCT-AC AGCGCATTCA GCAGCGAAA- GCAAAAGGTC TTCAATCTGC CCGTGCCACA
0181 GAAACTGGCC AAATTGTCGA TGTATTCCGC CTGCCAGTCT GA-GGGATGC CGTTGCACCG
0241 GCTGGAAGAC ACCGCAGGAA AATCGCCACC GTGACGTCGA GTCCTCCTAC TGTCCGGAGT
0301 TCAACGAGGA GTGCCGCAAC ACCAGCTGTC GCCATTCGCT GAGATCGCAC ATAGCCCATC
0361 TGGACAATAT ATCCAGTTCC AGCATGAACG AGCTACTGGG CGCCATTATA GACATGGAGA
0421 ACCTATTCAT GTCCATGCAG CGCGTCGAGG ACGAGGACAC CAAGAAGGTG TACCAGTACC
0481 TCTTCCGTTT GCTGCGCCAG T--GC |
Assemble Data |
4107R-1.IR_full 1 AGGCAGCGAATGGCGCAGCAACCGCTGGTGCATCTGGAGCCGCTGGCAGCGCCCAGAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4107R-1.in silico 1 AGGCAGCGAATGGCGCAGCAACCGCTGGTGCATCTGGAGCCGCTGGCAGCGCCCAGAATC 60
4107R-1.IR_full 61 CAGGACACGGAGGAGCTGCGTCCGGCGCTGGCAGTGTGCCGGCAGAGGGAACGCGCCAGA 120
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4107R-1.in silico 61 CAGGACACGGAGGAGCTGCGTCCGGCGCTGGCAGTGTGCCGGCAGAGGGAACGCGCCAGA 120
4107R-1.IR_full 121 ACAGCCTCACAGCGCATTCAGCAGCGAAAAGCAAAAGGTCTTCAATCTGCCCGTGCCACA 180
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
4107R-1.in silico 121 ACAGCCT-ACAGCGCATTCAGCAGCGAAA-GCAAAAGGTCTTCAATCTGCCCGTGCCACA 180
4107R-1.IR_full 181 GAAACTGGCCAAATTGTCGATGTATTCCGCCTGCCAGTCTGAGGGGATGCCGTTGCACCG 240
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4107R-1.in silico 181 GAAACTGGCCAAATTGTCGATGTATTCCGCCTGCCAGTCTGA-GGGATGCCGTTGCACCG 240
4107R-1.IR_full 241 GCTGGAAGACACCGCAGGAAAATCGCCACCGTGACGTCGAGTCCTCCTACTGTCCGGAGT 300
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4107R-1.in silico 241 GCTGGAAGACACCGCAGGAAAATCGCCACCGTGACGTCGAGTCCTCCTACTGTCCGGAGT 300
4107R-1.IR_full 301 TCAACGAGGAGTGCCGCAACACCAGCTGTCGCCATTCGCTGAGATCGCACATAGCCCATC 360
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4107R-1.in silico 301 TCAACGAGGAGTGCCGCAACACCAGCTGTCGCCATTCGCTGAGATCGCACATAGCCCATC 360
4107R-1.IR_full 361 TGGACAATATATCCAGTTCCAGCATGAACGAGCTACTGGGCGCCATTATAGACATGGAGA 420
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4107R-1.in silico 361 TGGACAATATATCCAGTTCCAGCATGAACGAGCTACTGGGCGCCATTATAGACATGGAGA 420
4107R-1.IR_full 421 ACCTATTCATGTCCATGCAGCGCGTCGAGGACGAGGACACCAAGAAGGTGTACCAGTACC 480
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4107R-1.in silico 421 ACCTATTCATGTCCATGCAGCGCGTCGAGGACGAGGACACCAAGAAGGTGTACCAGTACC 480
4107R-1.IR_full 481 TCTTCCGTTTGCTGCGCCAGTCGGC 505
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4107R-1.in silico 481 TCTTCCGTTTGCTGCGCCAGT--GC 505
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_140329.2 |
CG4107-RA (Pcaf), mRNA |
0.2 |
1 |
7 |
3 |
2 |
NM_166516.1 |
CG11170-RB (CG11170), mRNA |
0 |
0 |
12 |
4 |
2 |
NM_176723.2 |
CG33175-RG, transcript variant G (spri), mRNA |
0 |
0 |
4 |
7 |
2 |
NM_001032403.1 |
CG7649-RB, transcript variant B (Neu3), mRNA |
0 |
0 |
4 |
7 |
2 |
NM_001032404.1 |
CG7649-RA, transcript variant A (Neu3), mRNA |
0 |
0 |
3 |
3 |
8 |
NM_136080.1 |
CG10431-RA (CG10431), mRNA |
0 |
0 |
2 |
3 |
5 |
NM_139598.2 |
CG14989-RB (CG14989), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_139371.1 |
CG13917-RA (CG13917), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_079395.2 |
CG9695-RA (Dab), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_168934.1 |
CG11248-RB, transcript variant B (CG11248), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_141091.1 |
CG11248-RA, transcript variant A (CG11248), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_080110.2 |
CG32356-RA, transcript variant A (ImpE1), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_137183.1 |
CG8102-RB, transcript variant B (CG8102), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_168301.1 |
CG5735-RD, transcript variant D (orb2), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_140009.1 |
CG5735-RB, transcript variant B (orb2), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_168300.1 |
CG5735-RC, transcript variant C (orb2), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_168302.1 |
CG5735-RA, transcript variant A (orb2), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_166086.1 |
CG8102-RA, transcript variant A (CG8102), mRNA |
0 |
0 |
1 |
5 |
6 |
NM_137081.2 |
CG30483-RA (Prosap), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_140816.1 |
CG6841-RA (CG6841), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_140116.2 |
CG8104-RA (nudE), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_140264.1 |
CG5897-RA (CG5897), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_143386.2 |
CG14528-RA (CG14528), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_206586.1 |
CG31038-RC, transcript variant C (CG31038), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_142558.2 |
CG7342-RA (CG7342), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_137703.1 |
CG15655-RA (CG15655), mRNA |
0 |
0 |
0 |
6 |
2 |
NM_080132.2 |
CG11295-RA (l(2)dtl), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_168571.2 |
CG32133-RA (CG32133), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_136035.4 |
CG10283-RA, transcript variant A (CG10283), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_165255.1 |
CG10283-RB, transcript variant B (CG10283), mRNA |
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