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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4103R-3 
 Symbol CG4103  Full Name CG4103 
 CG No CG4103  Old CG No CG4103 
 Synonyms BG:DS00929.4, CG4103 
 Accession No (Link to NCBI) NM_135893.1 
 Inserted Chr. ll 
 Insertional Mutation  semi-lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees semi-lethal 
 Map Viewer
 Reference
[Please submit your publication] 		Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGCAGCAGATTCGAGTACGTTA 
 Primer Seq. 3' 
aatctagaggtaccCAGGCCTTTTTCCAAAACGAG 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 GCAGCAGATT CGAGTACGTT AAATCCTTTG AGCAGGACGA CAGCATACTG CCTAATGTGT 
0061 GGATAGTCAT ACGAATAGAC GGCAAAAAGT TCCACAAGTT CTCCAAGACG CACGATTTTG 
0121 AAAAGCCCAA CGATGAAAAT GCTCTCAATG TGATGAATGC TGCTGCCACG GCGGTGATGC 
0181 AGGAGTTTCG GGATATTGTC CTCGCCTACG GTCAAAGTGA TGAGTACTCC TTTGTTTTTC 
0241 GCAAAGAGAC GGCAGCGTTC AAGCGACGAT CCGCCAAACT GCTCACCTAC GTCACCAGCT 
0301 TGTTCTCCTC GAGCTATGTA ATGCAATGGT CCAAGTGGAT GAATCTGCCA TTGGCCTATG 
0361 CTCCGTGTTT CGATGGTCGC GTTGTTCTGT AtcNTTCGGA GCAGAATCTA AAGGACTATC 
0421 TCAGCTGGCG ACAGGCCGAT GTGCATGTGA ACAACCTGTA CAATACCGCC TTTTGGAAAC 
0481 TCGTTTTGGA AAAAGGCCTG  
 in silico PCR Fragment 
0001 GCAGCAGATT CGAGTACGTT AAATCCTTTG AGCAGGACGA CAGCATACTG CCTAATGTGT 
0061 GGATAGTCAT ACGAATAGAC GGCAAAAAGT TCCACAAGTT CTCCAAGACG CACGATTTTG 
0121 AAAAGCCCAA CGATGAAAAT GCTCTCAATG TGATGAATGC TGCTGCCACG GCGGTGATGC 
0181 AGGAGTTTCG GGATATTGTC CTCGCCTACG GTCAAAGTGA TGAGTACTCC TTTGTTTTTC 
0241 GCAAAGAGAC GGCAGCGTTC AAGCGACGAT CCGCCAAACT GCTCACCTAC GTCACCAGCT 
0301 TGTTCTCCTC GAGCTATGTA ATGCAATGGT CCAAGTGGAT GAATCTGCCA TTGGCCTATG 
0361 CTCCGTGTTT CGATGGTCGC GTTGTTCTGT ATCCTTCGGA GCAGAATCTA AAGGACTATC 
0421 TCAGCTGGCG ACAGGCCGAT GTGCATGTGA ACAACCTGTA CAATACCGCC TTTTGGAAAC 
0481 TCGTTTTGGA AAAAGGCCTG  
 Assemble Data 

4103R-3.IR_full       1   GCAGCAGATTCGAGTACGTTAAATCCTTTGAGCAGGACGACAGCATACTGCCTAATGTGT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4103R-3.in silico     1   GCAGCAGATTCGAGTACGTTAAATCCTTTGAGCAGGACGACAGCATACTGCCTAATGTGT 60


4103R-3.IR_full       61  GGATAGTCATACGAATAGACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4103R-3.in silico     61  GGATAGTCATACGAATAGACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTG 120


4103R-3.IR_full       121 AAAAGCCCAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGATGC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4103R-3.in silico     121 AAAAGCCCAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGATGC 180


4103R-3.IR_full       181 AGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTACTCCTTTGTTTTTC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4103R-3.in silico     181 AGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTACTCCTTTGTTTTTC 240


4103R-3.IR_full       241 GCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAAACTGCTCACCTACGTCACCAGCT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4103R-3.in silico     241 GCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAAACTGCTCACCTACGTCACCAGCT 300


4103R-3.IR_full       301 TGTTCTCCTCGAGCTATGTAATGCAATGGTCCAAGTGGATGAATCTGCCATTGGCCTATG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4103R-3.in silico     301 TGTTCTCCTCGAGCTATGTAATGCAATGGTCCAAGTGGATGAATCTGCCATTGGCCTATG 360


4103R-3.IR_full       361 CTCCGTGTTTCGATGGTCGCGTTGTTCTGTATCNTTCGGAGCAGAATCTAAAGGACTATC 420
                          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
4103R-3.in silico     361 CTCCGTGTTTCGATGGTCGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATC 420


4103R-3.IR_full       421 TCAGCTGGCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGAAAC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4103R-3.in silico     421 TCAGCTGGCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGAAAC 480


4103R-3.IR_full       481 TCGTTTTGGAAAAAGGCCTG 500
                          ||||||||||||||||||||
4103R-3.in silico     481 TCGTTTTGGAAAAAGGCCTG 500



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_135893.1  CG4103-RA (CG4103), mRNA 
0   0  3  3  4  NM_137477.2  CG5154-RA (Idgf5), mRNA 
0   0  2  3  2  NM_139944.2  CG7197-RA (CG7197), mRNA 
0   0  2  2  4  NM_140149.2  CG8003-RA (CG8003), mRNA 
0   0  2  2  2  NM_142576.2  CG4662-RA, transcript variant A (CG4662), mRNA 
0   0  2  2  2  NM_169877.1  CG4662-RB, transcript variant B (CG4662), mRNA 
0   0  1  5  2  NM_142385.1  CG14322-RA (CG14322), mRNA 
0   0  1  3  3  NM_001038743.1  CG33980-RA (CG33980), mRNA 
0   0  1  2  6  NM_169913.1  CG3856-RA, transcript variant A (Oamb), mRNA 
0   0  1  2  6  NM_169914.1  CG3856-RC, transcript variant C (Oamb), mRNA 
0   0  1  2  4  NM_169704.1  CG32855-RA (CG32855), mRNA 
0   0  1  2  3  NM_169761.1  CG31190-RA, transcript variant A (CG31190), mRNA 
0   0  1  2  3  NM_206504.1  CG31190-RB, transcript variant B (CG31190), mRNA 
0   0  1  2  2  NM_206400.1  CG8660-RB, transcript variant B (Fibp), mRNA 
0   0  1  2  2  NM_206399.1  CG8660-RC, transcript variant C (Fibp), mRNA 
0   0  0  5  2  NM_140081.2  CG8336-RA, transcript variant A (CG8336), mRNA 
0   0  0  5  2  NM_168355.1  CG8336-RC, transcript variant C (CG8336), mRNA 
0   0  0  5  2  NM_168354.1  CG8336-RB, transcript variant B (CG8336), mRNA 
0   0  0  4  8  NM_058149.3  CG3352-RA (ft), mRNA 
0   0  0  4  6  NM_168571.2  CG32133-RA (CG32133), mRNA 
0   0  0  4  4  NM_206437.1  CG17603-RC, transcript variant C (Taf1), mRNA 
0   0  0  4  4  NM_057608.4  CG17603-RA, transcript variant A (Taf1), mRNA 
0   0  0  4  4  NM_206438.1  CG17603-RB, transcript variant B (Taf1), mRNA 
0   0  0  4  4  NM_136525.1  CG12126-RA (CG12126), mRNA 
0   0  0  4  2  NM_135169.2  CG9493-RA (Pez), mRNA 
0   0  0  4  2  NM_176156.1  CG30044-RA (CG30044), mRNA 
0   0  0  3  11  NM_164544.2  CG8851-RB, transcript variant B (CG8851), mRNA 
0   0  0  3  11  NM_134944.2  CG8851-RA, transcript variant A (CG8851), mRNA 
0   0  0  3  8  NR_001944.1  CR32385, miscRNA 
0   0  0  3  6  NM_168576.1  CG32138-RB, transcript variant B (CG32138), mRNA 

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