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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
3949R-3 |
| Symbol |
hoip |
Full Name |
hoi-polloi |
| CG No |
CG3949 |
Old CG No |
CG3949 |
| Synonyms |
CG3949, hoip |
| Accession No (Link to NCBI) |
NM_079975.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Park J, Lee J, Kim JH, Lee J, Park H, Lim C.
ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.
Nucleic Acids Res (2021) 49(19) 11294-11311
[
PubMed ID = 34551427
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTTAATCCCAAGGCATTCCCGC |
| Primer Seq. 3' |
aatctagaggtaccAGTCGCTCGATCTCCTGCTGA |
| Predicted Fragment Size |
361 |
| IR fragment full Seq |
0001 TTAATCCCAA GGCATTGCCC GCTGGCCGAT GCCCAGCTTA CCGCCAAGAT CATGAACTTG
0061 CTGCAGCAAG CATTGAACTA CAATCAACTG CGCAAGGGAG CCAACGAGGC CACCAAGACC
0121 CTCAATCGCG GACTGGCCGA TATTGTGGTG CTGGCCGGTG ATNGCGGAGC CCATCGAGAT
0181 TCTGCTCCAT TTGCCGCTCC TGTGCGAGGA CAAGAACGTG CCCTACGTCT TCGTTCGTTC
0241 CAAGCAGGCC TTGGGGCGTG CGTGCGGAGT TTCCCGGCCA ATAGTCGCCT GCTCTGTGAC
0301 CACCAACGAG GGCAGCCAGC TCAAGTCGCA GATCACCTCC ATTCAGCAGG AGATCGAGCG
0361 ACT |
| in silico PCR Fragment |
0001 TTAATCCCAA GGCATT-CCC GCTGGCCGAT GCCCAGCTTA CCGCCAAGAT CATGAACTTG
0061 CTGCAGCAAG CATTGAACTA CAATCAACTG CGCAAGGGAG CCAACGAGGC CACCAAGACC
0121 CTCAATCGCG GACTGGCCGA TATTGTGGTG CTGGCCGGTG AT-GCGGAGC CCATCGAGAT
0181 TCTGCTCCAT TTGCCGCTCC TGTGCGAGGA CAAGAACGTG CCCTACGTCT TCGTTCGTTC
0241 CAAGCAGGCC TTGGGGCGTG CGTGCGGAGT TTCCCGGCCA ATAGTCGCCT GCTCTGTGAC
0301 CACCAACGAG GGCAGCCAGC TCAAGTCGCA GATCACCTCC ATTCAGCAGG AGATCGAGCG
0361 ACT |
| Assemble Data |
3949R-3.IR_full 1 TTAATCCCAAGGCATTGCCCGCTGGCCGATGCCCAGCTTACCGCCAAGATCATGAACTTG 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
3949R-3.in silico 1 TTAATCCCAAGGCATT-CCCGCTGGCCGATGCCCAGCTTACCGCCAAGATCATGAACTTG 60
3949R-3.IR_full 61 CTGCAGCAAGCATTGAACTACAATCAACTGCGCAAGGGAGCCAACGAGGCCACCAAGACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3949R-3.in silico 61 CTGCAGCAAGCATTGAACTACAATCAACTGCGCAAGGGAGCCAACGAGGCCACCAAGACC 120
3949R-3.IR_full 121 CTCAATCGCGGACTGGCCGATATTGTGGTGCTGGCCGGTGATNGCGGAGCCCATCGAGAT 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
3949R-3.in silico 121 CTCAATCGCGGACTGGCCGATATTGTGGTGCTGGCCGGTGAT-GCGGAGCCCATCGAGAT 180
3949R-3.IR_full 181 TCTGCTCCATTTGCCGCTCCTGTGCGAGGACAAGAACGTGCCCTACGTCTTCGTTCGTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3949R-3.in silico 181 TCTGCTCCATTTGCCGCTCCTGTGCGAGGACAAGAACGTGCCCTACGTCTTCGTTCGTTC 240
3949R-3.IR_full 241 CAAGCAGGCCTTGGGGCGTGCGTGCGGAGTTTCCCGGCCAATAGTCGCCTGCTCTGTGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3949R-3.in silico 241 CAAGCAGGCCTTGGGGCGTGCGTGCGGAGTTTCCCGGCCAATAGTCGCCTGCTCTGTGAC 300
3949R-3.IR_full 301 CACCAACGAGGGCAGCCAGCTCAAGTCGCAGATCACCTCCATTCAGCAGGAGATCGAGCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3949R-3.in silico 301 CACCAACGAGGGCAGCCAGCTCAAGTCGCAGATCACCTCCATTCAGCAGGAGATCGAGCG 360
3949R-3.IR_full 361 ACT 363
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3949R-3.in silico 361 ACT 363
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
343 |
0 |
0 |
0 |
NM_079975.2 |
CG3949-RA (hoip), mRNA |
| 0 |
0 |
5 |
11 |
8 |
NM_140858.2 |
CG18294-RA (CG18294), mRNA |
| 0 |
0 |
4 |
9 |
10 |
NM_001014621.1 |
CG8651-RE, transcript variant E (trx), mRNA |
| 0 |
0 |
4 |
9 |
10 |
NM_134281.1 |
CG8651-RC, transcript variant C (trx), mRNA |
| 0 |
0 |
4 |
9 |
10 |
NM_057421.2 |
CG8651-RD, transcript variant D (trx), mRNA |
| 0 |
0 |
4 |
9 |
10 |
NM_057422.2 |
CG8651-RB, transcript variant B (trx), mRNA |
| 0 |
0 |
4 |
9 |
10 |
NM_134282.1 |
CG8651-RA, transcript variant A (trx), mRNA |
| 0 |
0 |
4 |
2 |
4 |
NM_168171.1 |
CG32397-RA (CG32397), mRNA |
| 0 |
0 |
3 |
2 |
3 |
NM_168626.1 |
CG7439-RC, transcript variant C (AGO2), mRNA |
| 0 |
0 |
3 |
2 |
3 |
NM_140518.1 |
CG7439-RB, transcript variant B (AGO2), mRNA |
| 0 |
0 |
2 |
3 |
11 |
NM_078607.2 |
CG6157-RA (dah), mRNA |
| 0 |
0 |
2 |
3 |
8 |
NM_135247.2 |
CG9138-RA (SP1070), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_132784.1 |
CG15031-RA (CG15031), mRNA |
| 0 |
0 |
1 |
7 |
6 |
NM_205963.1 |
CG6320-RC, transcript variant C (Ca-beta), mRNA |
| 0 |
0 |
1 |
7 |
6 |
NM_205962.1 |
CG6320-RD, transcript variant D (Ca-beta), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_143435.2 |
CG2321-RA (CG2321), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_165701.1 |
CG1623-RE, transcript variant E (CG1623), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_136676.2 |
CG1623-RC, transcript variant C (CG1623), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_165698.1 |
CG1623-RA, transcript variant A (CG1623), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_165700.1 |
CG1623-RD, transcript variant D (CG1623), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_165699.1 |
CG1623-RB, transcript variant B (CG1623), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_140510.2 |
CG7275-RA (CG7275), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_143621.1 |
CG1792-RA (CG1792), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_001007096.1 |
CG8742-RB, transcript variant B (Gyc76C), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_001007095.1 |
CG8742-RC, transcript variant C (Gyc76C), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_079441.3 |
CG8742-RA, transcript variant A (Gyc76C), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_132061.1 |
CG5937-RA (CG5937), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_139482.1 |
CG14950-RA (CG14950), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_142766.1 |
CG5386-RA (CG5386), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_206123.1 |
CG33464-RA (CG33464), mRNA |
|
| Wing Disc |
GFP
 |
Puc
 |
Caspase
 |
DAPI
 |
Merge
 |
Figure
 |
JNK signal
| N |
 |
| ++ |
|
| DB |
 |
| ++ |
|
| DC |
 |
| ++ |
|
| DM |
 |
| ++ |
|
| VM |
 |
| ++ |
|
| VB |
 |
| + |
|
|
Caspase-3 signal
| N |
|
| ++ |
|
| DB |
|
| + |
|
| DC |
|
| + |
|
| DM |
|
| ++ |
|
| VM |
|
| ++ |
|
| VB |
|
| ++ |
|
|
| Dcompartment |
|
Penetrance |
| ++ |
|
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