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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3806R-3 
 Symbol eIF2B-epsilon  Full Name eIF2B-epsilon 
 CG No CG3806  Old CG No CG3806 
 Synonyms elf2B-epsilon, EG:86E4.1, CG3806, eIF2Bepsilon, eIF2B-epsilon, eIF-2bepsilon 
 Accession No (Link to NCBI) NM_130605.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Hoshino G, Imahori K, Matsuyuki T, Yamakawa-Kobayashi K.
The Nutrient-Responsive Molecular Chaperone Hsp90 Supports Growth and Development in Drosophila.
Front Physiol (2021) 12 690564 [ PubMed ID = 34239451 ] [ RRC reference ]

Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGAGGTGTTCGTGTACACCAGC 
 Primer Seq. 3'
aatctagaggtaccATTGAGGGCGAGCCAATGGCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GAGGTGTATC GTGTACACCA GCCTCTATCG CTCGAGCATC CGGGAGCACA TCAGGGCCGG 
0061 CATTGCCACG GACGCAGCCT GGTCATTCAA GATGACCGTC CATGTGATTG GCGGCGAGGG 
0121 TTGTCGCTGC TTCGGCGATG CCATGCGTGA TTTGGACAAT AAGGCGCTGA TCCGTGGCCA 
0181 CTTCATTCTG CTCGGCGCCG ATACGGTGAC CAATGCCGAT CTGCGCCCAG TGCTGGAGCA 
0241 GCACAAGCGG CAGGCCAAGT TCGACAAGGG CACGGCCGCC ACGCTGGTGT TCAAGGAGTG 
0301 TGCCAACAAT GTGCGCACTG GCAACGAGGT GCTGATCGCC GTGGACCGTC GCAACGACCG 
0361 GCTGCACTAC CACCAGCGGC TGCGGATGCA CCACAAGGAG AATCGCTACC AACTACCACT 
0421 AGACGTCTTT CTGGGCAACT CGTGTGTGGC GCTGCACCAC AACCTCCTAG ATCCACAGAT 
0481 TGCCATTGGC TCGCCCTCAA T 
 in silico PCR Fragment
0001 GAGGTGT-TC GTGTACACCA GCCTCTATCG CTCGAGCATC CGGGAGCACA TCAGGGCCGG 
0061 CATTGCCACG GACGCAGCCT GGTCATTCAA GATGACCGTC CATGTGATTG GCGGCGAGGG 
0121 TTGTCGCTGC TTCGGCGATG CCATGCGTGA TTTGGACAAT AAGGCGCTGA TCCGTGGCCA 
0181 CTTCATTCTG CTCGGCGCCG ATACGGTGAC CAATGCCGAT CTGCGCCCAG TGCTGGAGCA 
0241 GCACAAGCGG CAGGCCAAGT TCGACAAGGG CACGGCCGCC ACGCTGGTGT TCAAGGAGTG 
0301 TGCCAACAAT GTGCGCACTG GCAACGAGGT GCTGATCGCC GTGGACCGTC GCAACGACCG 
0361 GCTGCACTAC CACCAGCGGC TGCGGATGCA CCACAAGGAG AATCGCTACC AACTACCACT 
0421 AGATGTCTTT CTGGGCAACT CGTGTGTGGC GCTGCACCAC AACCTCCTAG ATCCGCAGAT 
0481 TGCCATTGGC TCGCCCTCAA T 
 Assemble Data

3806R-3.IR_full       1   GAGGTGTATCGTGTACACCAGCCTCTATCGCTCGAGCATCCGGGAGCACATCAGGGCCGG 60
                          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
3806R-3.in silico     1   GAGGTGT-TCGTGTACACCAGCCTCTATCGCTCGAGCATCCGGGAGCACATCAGGGCCGG 60


3806R-3.IR_full       61  CATTGCCACGGACGCAGCCTGGTCATTCAAGATGACCGTCCATGTGATTGGCGGCGAGGG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3806R-3.in silico     61  CATTGCCACGGACGCAGCCTGGTCATTCAAGATGACCGTCCATGTGATTGGCGGCGAGGG 120


3806R-3.IR_full       121 TTGTCGCTGCTTCGGCGATGCCATGCGTGATTTGGACAATAAGGCGCTGATCCGTGGCCA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3806R-3.in silico     121 TTGTCGCTGCTTCGGCGATGCCATGCGTGATTTGGACAATAAGGCGCTGATCCGTGGCCA 180


3806R-3.IR_full       181 CTTCATTCTGCTCGGCGCCGATACGGTGACCAATGCCGATCTGCGCCCAGTGCTGGAGCA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3806R-3.in silico     181 CTTCATTCTGCTCGGCGCCGATACGGTGACCAATGCCGATCTGCGCCCAGTGCTGGAGCA 240


3806R-3.IR_full       241 GCACAAGCGGCAGGCCAAGTTCGACAAGGGCACGGCCGCCACGCTGGTGTTCAAGGAGTG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3806R-3.in silico     241 GCACAAGCGGCAGGCCAAGTTCGACAAGGGCACGGCCGCCACGCTGGTGTTCAAGGAGTG 300


3806R-3.IR_full       301 TGCCAACAATGTGCGCACTGGCAACGAGGTGCTGATCGCCGTGGACCGTCGCAACGACCG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3806R-3.in silico     301 TGCCAACAATGTGCGCACTGGCAACGAGGTGCTGATCGCCGTGGACCGTCGCAACGACCG 360


3806R-3.IR_full       361 GCTGCACTACCACCAGCGGCTGCGGATGCACCACAAGGAGAATCGCTACCAACTACCACT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3806R-3.in silico     361 GCTGCACTACCACCAGCGGCTGCGGATGCACCACAAGGAGAATCGCTACCAACTACCACT 420


3806R-3.IR_full       421 AGACGTCTTTCTGGGCAACTCGTGTGTGGCGCTGCACCACAACCTCCTAGATCCACAGAT 480
                          ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
3806R-3.in silico     421 AGATGTCTTTCTGGGCAACTCGTGTGTGGCGCTGCACCACAACCTCCTAGATCCGCAGAT 480


3806R-3.IR_full       481 TGCCATTGGCTCGCCCTCAAT 501
                          |||||||||||||||||||||
3806R-3.in silico     481 TGCCATTGGCTCGCCCTCAAT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_206606.1  CG3806-RB, transcript variant B (eIF2B-epsilon), mRNA 
100   482  NM_130605.3  CG3806-RA, transcript variant A (eIF2B-epsilon), mRNA 
0   NM_079501.2  CG1058-RA (rpk), mRNA 
0   NM_078801.4  CG4405-RA, transcript variant A (jp), mRNA 
0   NM_164858.1  CG4405-RB, transcript variant B (jp), mRNA 
0   NM_080317.2  CG2647-RA (per), mRNA 
0   NM_136076.2  CG10621-RA (CG10621), mRNA 
0   NM_132421.2  CG1826-RA (CG1826), mRNA 
0   NM_141115.1  CG14562-RA (CG14562), mRNA 
0   NM_165334.1  CG2488-RA, transcript variant A (phr6-4), mRNA 
0   NM_057840.3  CG2488-RB, transcript variant B (phr6-4), mRNA 
0   NM_165557.1  CG1553-RB, transcript variant B (CG1553), mRNA 
0   NM_165558.1  CG1553-RC, transcript variant C (CG1553), mRNA 
0   NM_136480.2  CG1553-RA, transcript variant A (CG1553), mRNA 
0   NM_136931.1  CG8510-RA (CG8510), mRNA 
0   NM_167346.1  CG4353-RA, transcript variant A (hep), mRNA 
0   NM_167347.1  CG4353-RB, transcript variant B (hep), mRNA 
0   NM_132342.2  CG32699-RA, transcript variant A (CG32699), mRNA 
0   NM_001042800.1  CG32699-RB, transcript variant B (CG32699), mRNA 
0   NM_135222.2  CG11188-RA (CG11188), mRNA 
0   NM_079357.2  CG7250-RA (Toll-6), mRNA 
0   NM_080013.2  CG6050-RA (EfTuM), mRNA 
0   NM_166569.1  CG12781-RB, transcript variant B (nahoda), mRNA 
0   NM_079091.2  CG12781-RA, transcript variant A (nahoda), mRNA 
0   NM_141231.3  CG31534-RA, transcript variant A (CG31534), mRNA 
0   NM_176400.1  CG31534-RB, transcript variant B (CG31534), mRNA 
0   NM_143756.2  CG1548-RA (cathD), mRNA 
0   NM_143310.2  CG12885-RA (CG12885), mRNA 
0   NM_169094.1  CG1093-RA, transcript variant A (plx), mRNA 
0   13  NM_138080.2  CG4612-RA (CG4612), mRNA 

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