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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
3773R-1 |
Symbol |
CG3773 |
Full Name |
CG3773 |
CG No |
CG3773 |
Old CG No |
CG3773 |
Synonyms |
unnamed, anon-EST:fe2D12, anon-EST:fe2D10, CG3773 |
Accession No (Link to NCBI) |
NM_142537.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G. A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgATTCCTGCTCCGCTTAGCCGT |
Primer Seq. 3' |
aatctagaggtaccTCTGGGGAGTCGGTTGGTTTC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 NTTCCTGCTC CGCTTAGCCG TATCCCGGGC ACCAGCCAGG CGAAGGAGAA GCACAGCAAG
0061 GACCTGAAGA CCCTTACCTA TCCGCAGCTG CTGGAGATTA AGGACAGGCA GTCTCACTTT
0121 CTGTCGTTCA AAAAGCGTTT GCACCAACTG CCGGACAAGG GAAAGCGTCT GCAGGAGTCG
0181 TACGACAAAT TACTGGCCGA GATCAGGAGG CGGGATGAAG TAGAGGAAGC GACTCGAATG
0241 TTGAGCGGTC TCAACATTGT CGAAAAGGGC AAAATTGCTC TCAACAATCT GGAGTGGAAT
0301 GGCAGAAACA CGGACGAGGG CGCCCATGTG GACGACATTC TGGACAGCGA TGATGAGGTG
0361 GAGATGGATC CGCTGCGGAT TATAGCGCAG GGAACAATGC ACGAGAAGAA GGTCAAGGTT
0421 TTGCCTCCGC CAACGAGTTT CATTACGGCA GATGATCTGG CGGATATCGA GGAGTTTAAG
0481 AAACCAACCG ACTCCCCAGA |
in silico PCR Fragment |
0001 ATTCCTGCTC CGCTTAGCCG TATCCCGGGC ACCAGCCAGG CGAAGGAGAA GCACAGCAAG
0061 GACCTGAAGA CCCTTACCTA TCCGCAGCTG CTGGAGATTA AGGACAGGCA GTCTCACTTT
0121 CTGTCGTTCA AAAAGCGTTT GCACCAACTG CCGGACAAGG GAAAGCGTCT GCAGGAGTCG
0181 TACGACAAAT TACTGGCCGA GATCAGGAGG CGGGATGAAG TAGAGGAAGC GACTCGAATG
0241 TTGAGCGGTC TCAACATTGT CGAAAAGGGC AAAATTGCTC TCAACAATCT GGAGTGGAAT
0301 GGCAGAAACA CGGACGAGGG CGCCCATGTG GACGACATTC TGGACAGCGA TGATGAGGTG
0361 GAGATGGATC CGCTGCGGAT TATAGCGCAG GGAACAATGC ACGAGAAGAA GGTCAAGGTT
0421 TTGCCTCCGC CAACGAGTTT CATTACGGCA GATGATCTGG CGGATATCGA GGAGTTTAAG
0481 AAACCAACCG ACTCCCCAGA |
Assemble Data |
3773R-1.IR_full 1 TTCCTGCTCCGCTTAGCCGTATCCCGGGCACCAGCCAGGCGAAGGAGAAGCACAGCAAG 59
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3773R-1.in silico 1 TTCCTGCTCCGCTTAGCCGTATCCCGGGCACCAGCCAGGCGAAGGAGAAGCACAGCAAG 59
3773R-1.IR_full 61 GACCTGAAGACCCTTACCTATCCGCAGCTGCTGGAGATTAAGGACAGGCAGTCTCACTTT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico 61 GACCTGAAGACCCTTACCTATCCGCAGCTGCTGGAGATTAAGGACAGGCAGTCTCACTTT 119
3773R-1.IR_full 121 CTGTCGTTCAAAAAGCGTTTGCACCAACTGCCGGACAAGGGAAAGCGTCTGCAGGAGTCG 179
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3773R-1.in silico 121 CTGTCGTTCAAAAAGCGTTTGCACCAACTGCCGGACAAGGGAAAGCGTCTGCAGGAGTCG 179
3773R-1.IR_full 181 TACGACAAATTACTGGCCGAGATCAGGAGGCGGGATGAAGTAGAGGAAGCGACTCGAATG 239
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3773R-1.in silico 181 TACGACAAATTACTGGCCGAGATCAGGAGGCGGGATGAAGTAGAGGAAGCGACTCGAATG 239
3773R-1.IR_full 241 TTGAGCGGTCTCAACATTGTCGAAAAGGGCAAAATTGCTCTCAACAATCTGGAGTGGAAT 299
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3773R-1.in silico 241 TTGAGCGGTCTCAACATTGTCGAAAAGGGCAAAATTGCTCTCAACAATCTGGAGTGGAAT 299
3773R-1.IR_full 301 GGCAGAAACACGGACGAGGGCGCCCATGTGGACGACATTCTGGACAGCGATGATGAGGTG 359
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3773R-1.in silico 301 GGCAGAAACACGGACGAGGGCGCCCATGTGGACGACATTCTGGACAGCGATGATGAGGTG 359
3773R-1.IR_full 361 GAGATGGATCCGCTGCGGATTATAGCGCAGGGAACAATGCACGAGAAGAAGGTCAAGGTT 419
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3773R-1.in silico 361 GAGATGGATCCGCTGCGGATTATAGCGCAGGGAACAATGCACGAGAAGAAGGTCAAGGTT 419
3773R-1.IR_full 421 TTGCCTCCGCCAACGAGTTTCATTACGGCAGATGATCTGGCGGATATCGAGGAGTTTAAG 479
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3773R-1.in silico 421 TTGCCTCCGCCAACGAGTTTCATTACGGCAGATGATCTGGCGGATATCGAGGAGTTTAAG 479
3773R-1.IR_full 481 AAACCAACCGACTCCCCAGA 499
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3773R-1.in silico 481 AAACCAACCGACTCCCCAGA 499
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_142537.1 |
CG3773-RA (CG3773), mRNA |
0.82 |
4 |
2 |
3 |
11 |
NM_168357.2 |
CG32045-RB, transcript variant B (fry), mRNA |
0.82 |
4 |
2 |
3 |
11 |
NM_001043133.1 |
CG32045-RD, transcript variant D (fry), mRNA |
0.2 |
1 |
2 |
3 |
2 |
NM_164561.2 |
CG3920-RB, transcript variant B (l(2)k16918), mRNA |
0.2 |
1 |
2 |
2 |
6 |
NM_136010.1 |
CG15147-RA (CG15147), mRNA |
0 |
0 |
3 |
3 |
4 |
NM_141876.1 |
CG12213-RB, transcript variant B (CG12213), mRNA |
0 |
0 |
3 |
3 |
4 |
NM_169442.1 |
CG12213-RA, transcript variant A (CG12213), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_142531.1 |
CG14282-RA (CG14282), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_078559.2 |
CG18085-RA (sev), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_132196.2 |
CG10777-RB (CG10777), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_142797.1 |
CG5376-RA (CG5376), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_080110.2 |
CG32356-RA, transcript variant A (ImpE1), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_001031901.1 |
CG14209-RC, transcript variant C (Shawn), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_001031902.1 |
CG14209-RB, transcript variant B (Shawn), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_167671.1 |
CG14208-RA, transcript variant A (Tyler), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_134483.2 |
CG14208-RB, transcript variant B (Tyler), mRNA |
0 |
0 |
1 |
3 |
10 |
NM_206236.1 |
CG15804-RB, transcript variant B (Dhc62B), mRNA |
0 |
0 |
1 |
3 |
10 |
NM_057737.2 |
CG15804-RA, transcript variant A (Dhc62B), mRNA |
0 |
0 |
1 |
3 |
7 |
NM_079866.2 |
CG1744-RA (chp), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_130709.1 |
CG14271-RB (Gas8), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_079131.2 |
CG3594-RA (Eap), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_140763.1 |
CG7408-RB (CG7408), mRNA |
0 |
0 |
1 |
2 |
9 |
NM_079684.3 |
CG4510-RA (Surf6), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_135308.1 |
CG7138-RA (r2d2), mRNA |
0 |
0 |
0 |
6 |
14 |
NM_138220.1 |
CG13889-RA (CG13889), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_130550.2 |
CG11417-RA (CG11417), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_141501.1 |
CG3223-RA (CG3223), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_167951.1 |
CG1146-RC, transcript variant C (CG1146), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_167950.1 |
CG1146-RB, transcript variant B (CG1146), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_139468.1 |
CG1146-RA, transcript variant A (CG1146), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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