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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3773R-1 
 Symbol CG3773  Full Name CG3773 
 CG No CG3773  Old CG No CG3773 
 Synonyms unnamed, anon-EST:fe2D12, anon-EST:fe2D10, CG3773 
 Accession No (Link to NCBI) NM_142537.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]

Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G.
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network.
Dev Cell (2010) 18(5) 862-76 [ PubMed ID = 20493818 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATTCCTGCTCCGCTTAGCCGT 
 Primer Seq. 3'
aatctagaggtaccTCTGGGGAGTCGGTTGGTTTC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 NTTCCTGCTC CGCTTAGCCG TATCCCGGGC ACCAGCCAGG CGAAGGAGAA GCACAGCAAG 
0061 GACCTGAAGA CCCTTACCTA TCCGCAGCTG CTGGAGATTA AGGACAGGCA GTCTCACTTT 
0121 CTGTCGTTCA AAAAGCGTTT GCACCAACTG CCGGACAAGG GAAAGCGTCT GCAGGAGTCG 
0181 TACGACAAAT TACTGGCCGA GATCAGGAGG CGGGATGAAG TAGAGGAAGC GACTCGAATG 
0241 TTGAGCGGTC TCAACATTGT CGAAAAGGGC AAAATTGCTC TCAACAATCT GGAGTGGAAT 
0301 GGCAGAAACA CGGACGAGGG CGCCCATGTG GACGACATTC TGGACAGCGA TGATGAGGTG 
0361 GAGATGGATC CGCTGCGGAT TATAGCGCAG GGAACAATGC ACGAGAAGAA GGTCAAGGTT 
0421 TTGCCTCCGC CAACGAGTTT CATTACGGCA GATGATCTGG CGGATATCGA GGAGTTTAAG 
0481 AAACCAACCG ACTCCCCAGA  
 in silico PCR Fragment
0001 ATTCCTGCTC CGCTTAGCCG TATCCCGGGC ACCAGCCAGG CGAAGGAGAA GCACAGCAAG 
0061 GACCTGAAGA CCCTTACCTA TCCGCAGCTG CTGGAGATTA AGGACAGGCA GTCTCACTTT 
0121 CTGTCGTTCA AAAAGCGTTT GCACCAACTG CCGGACAAGG GAAAGCGTCT GCAGGAGTCG 
0181 TACGACAAAT TACTGGCCGA GATCAGGAGG CGGGATGAAG TAGAGGAAGC GACTCGAATG 
0241 TTGAGCGGTC TCAACATTGT CGAAAAGGGC AAAATTGCTC TCAACAATCT GGAGTGGAAT 
0301 GGCAGAAACA CGGACGAGGG CGCCCATGTG GACGACATTC TGGACAGCGA TGATGAGGTG 
0361 GAGATGGATC CGCTGCGGAT TATAGCGCAG GGAACAATGC ACGAGAAGAA GGTCAAGGTT 
0421 TTGCCTCCGC CAACGAGTTT CATTACGGCA GATGATCTGG CGGATATCGA GGAGTTTAAG 
0481 AAACCAACCG ACTCCCCAGA  
 Assemble Data

3773R-1.IR_full        1   TTCCTGCTCCGCTTAGCCGTATCCCGGGCACCAGCCAGGCGAAGGAGAAGCACAGCAAG 59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico      1   TTCCTGCTCCGCTTAGCCGTATCCCGGGCACCAGCCAGGCGAAGGAGAAGCACAGCAAG 59


3773R-1.IR_full       61  GACCTGAAGACCCTTACCTATCCGCAGCTGCTGGAGATTAAGGACAGGCAGTCTCACTTT 119
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico     61  GACCTGAAGACCCTTACCTATCCGCAGCTGCTGGAGATTAAGGACAGGCAGTCTCACTTT 119


3773R-1.IR_full       121 CTGTCGTTCAAAAAGCGTTTGCACCAACTGCCGGACAAGGGAAAGCGTCTGCAGGAGTCG 179
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico     121 CTGTCGTTCAAAAAGCGTTTGCACCAACTGCCGGACAAGGGAAAGCGTCTGCAGGAGTCG 179


3773R-1.IR_full       181 TACGACAAATTACTGGCCGAGATCAGGAGGCGGGATGAAGTAGAGGAAGCGACTCGAATG 239
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico     181 TACGACAAATTACTGGCCGAGATCAGGAGGCGGGATGAAGTAGAGGAAGCGACTCGAATG 239


3773R-1.IR_full       241 TTGAGCGGTCTCAACATTGTCGAAAAGGGCAAAATTGCTCTCAACAATCTGGAGTGGAAT 299
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico     241 TTGAGCGGTCTCAACATTGTCGAAAAGGGCAAAATTGCTCTCAACAATCTGGAGTGGAAT 299


3773R-1.IR_full       301 GGCAGAAACACGGACGAGGGCGCCCATGTGGACGACATTCTGGACAGCGATGATGAGGTG 359
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico     301 GGCAGAAACACGGACGAGGGCGCCCATGTGGACGACATTCTGGACAGCGATGATGAGGTG 359


3773R-1.IR_full       361 GAGATGGATCCGCTGCGGATTATAGCGCAGGGAACAATGCACGAGAAGAAGGTCAAGGTT 419
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico     361 GAGATGGATCCGCTGCGGATTATAGCGCAGGGAACAATGCACGAGAAGAAGGTCAAGGTT 419


3773R-1.IR_full       421 TTGCCTCCGCCAACGAGTTTCATTACGGCAGATGATCTGGCGGATATCGAGGAGTTTAAG 479
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3773R-1.in silico     421 TTGCCTCCGCCAACGAGTTTCATTACGGCAGATGATCTGGCGGATATCGAGGAGTTTAAG 479


3773R-1.IR_full       481 AAACCAACCGACTCCCCAGA 499
                          ||||||||||||||||||||
3773R-1.in silico     481 AAACCAACCGACTCCCCAGA 499

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_142537.1  CG3773-RA (CG3773), mRNA 
0.82   11  NM_168357.2  CG32045-RB, transcript variant B (fry), mRNA 
0.82   11  NM_001043133.1  CG32045-RD, transcript variant D (fry), mRNA 
0.2   NM_164561.2  CG3920-RB, transcript variant B (l(2)k16918), mRNA 
0.2   NM_136010.1  CG15147-RA (CG15147), mRNA 
0   NM_141876.1  CG12213-RB, transcript variant B (CG12213), mRNA 
0   NM_169442.1  CG12213-RA, transcript variant A (CG12213), mRNA 
0   NM_142531.1  CG14282-RA (CG14282), mRNA 
0   NM_078559.2  CG18085-RA (sev), mRNA 
0   NM_132196.2  CG10777-RB (CG10777), mRNA 
0   NM_142797.1  CG5376-RA (CG5376), mRNA 
0   NM_080110.2  CG32356-RA, transcript variant A (ImpE1), mRNA 
0   NM_001031901.1  CG14209-RC, transcript variant C (Shawn), mRNA 
0   NM_001031902.1  CG14209-RB, transcript variant B (Shawn), mRNA 
0   NM_167671.1  CG14208-RA, transcript variant A (Tyler), mRNA 
0   NM_134483.2  CG14208-RB, transcript variant B (Tyler), mRNA 
0   10  NM_206236.1  CG15804-RB, transcript variant B (Dhc62B), mRNA 
0   10  NM_057737.2  CG15804-RA, transcript variant A (Dhc62B), mRNA 
0   NM_079866.2  CG1744-RA (chp), mRNA 
0   NM_130709.1  CG14271-RB (Gas8), mRNA 
0   NM_079131.2  CG3594-RA (Eap), mRNA 
0   NM_140763.1  CG7408-RB (CG7408), mRNA 
0   NM_079684.3  CG4510-RA (Surf6), mRNA 
0   NM_135308.1  CG7138-RA (r2d2), mRNA 
0   14  NM_138220.1  CG13889-RA (CG13889), mRNA 
0   NM_130550.2  CG11417-RA (CG11417), mRNA 
0   NM_141501.1  CG3223-RA (CG3223), mRNA 
0   NM_167951.1  CG1146-RC, transcript variant C (CG1146), mRNA 
0   NM_167950.1  CG1146-RB, transcript variant B (CG1146), mRNA 
0   NM_139468.1  CG1146-RA, transcript variant A (CG1146), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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