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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3734R-2 
 Symbol CG3734  Full Name CG3734 
 CG No CG3734  Old CG No CG3734 
 Synonyms CG3734 
 Accession No (Link to NCBI) NM_142545.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGCCAAACCCATGGTAGCATC 
 Primer Seq. 3'
aatctagaggtaccAACCAGGTGACCATAGTGGCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GGCCAAACCC ATGGTAGCAT CTTTGAGAGG ACTTTCAAAA GGATCCACGA GGAGCCACCA 
0061 CTGCCAACCA CTCAGAATCG AGCTGATGTA GTTCAAACCC TTTGGATTGA ACAGAAGCTG 
0121 GATCACTTCG ACCCGGAAGA AACGCGCACA TGGCAAATGC GCTATATGCT CAACGATGCA 
0181 CTTTACCAGT CTGGAGCACC ACTTTTTATT TATCTTGGCG GAGAATGGGA GATCTCATCG 
0241 GGCAGAATAA CCGGCGGTCA CCTATACGAC ATGGCCAAGG AGCACAATGC TCTTTTGGCC 
0301 TACACAGAGC ATCGCTACTA TGGCCAAAGC AAGCCCTTGC CTGATCTATC GAACGAAAAC 
0361 ATAAAATACC TAAATGTTAA TCAGTCCCTG GCCGATCTGG CTTATTTCAT AAACACCATC 
0421 AAGCAAAACC ACGAAGGTTT GTCCGATTCC AAGGTCATTA TTGTTGGAGG TTCCTACTCT 
0481 GCCACTATGG TCACCTGGTT  
 in silico PCR Fragment
0001 GGCCAAACCC ATGGTAGCAT CTTTGAGAGG ACTTTCAAAA GGATCCACGA GGAGCCACCA 
0061 CTGCCAACCA CTCAGAATCG AGCTGATGTA GTTCAAACCC TTTGGATTGA ACAGAAGCTG 
0121 GATCACTTCG ACCCGGAAGA AACGCGCACA TGGCAAATGC GCTATATGCT CAACGATGCA 
0181 CTTTACCAGT CTGGAGCACC ACTTTTTATT TATCTTGGCG GAGAATGGGA GATCTCATCG 
0241 GGCAGAATAA CCGGCGGTCA CCTATACGAC ATGGCCAAGG AGCACAATGC TCTTTTGGCC 
0301 TACACAGAGC ATCGCTACTA TGGCCAAAGC AAGCCCTTGC CTGATCTATC GAACGAAAAC 
0361 ATAAAATACC TAAATGTTAA TCAGTCCCTG GCCGATCTGG CTTATTTCAT AAACACCATC 
0421 AAGCAAAACC ACGAAGGTTT GTCCGATTCC AAGGTCATTA TTGTTGGAGG TTCCTACTCT 
0481 GCCACTATGG TCACCTGGTT  
 Assemble Data

3734R-2.IR_full       1   GGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGGATCCACGAGGAGCCACCA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3734R-2.in silico     1   GGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGGATCCACGAGGAGCCACCA 60


3734R-2.IR_full       61  CTGCCAACCACTCAGAATCGAGCTGATGTAGTTCAAACCCTTTGGATTGAACAGAAGCTG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3734R-2.in silico     61  CTGCCAACCACTCAGAATCGAGCTGATGTAGTTCAAACCCTTTGGATTGAACAGAAGCTG 120


3734R-2.IR_full       121 GATCACTTCGACCCGGAAGAAACGCGCACATGGCAAATGCGCTATATGCTCAACGATGCA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3734R-2.in silico     121 GATCACTTCGACCCGGAAGAAACGCGCACATGGCAAATGCGCTATATGCTCAACGATGCA 180


3734R-2.IR_full       181 CTTTACCAGTCTGGAGCACCACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3734R-2.in silico     181 CTTTACCAGTCTGGAGCACCACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCG 240


3734R-2.IR_full       241 GGCAGAATAACCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTCTTTTGGCC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3734R-2.in silico     241 GGCAGAATAACCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTCTTTTGGCC 300


3734R-2.IR_full       301 TACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCTGATCTATCGAACGAAAAC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3734R-2.in silico     301 TACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCTGATCTATCGAACGAAAAC 360


3734R-2.IR_full       361 ATAAAATACCTAAATGTTAATCAGTCCCTGGCCGATCTGGCTTATTTCATAAACACCATC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3734R-2.in silico     361 ATAAAATACCTAAATGTTAATCAGTCCCTGGCCGATCTGGCTTATTTCATAAACACCATC 420


3734R-2.IR_full       421 AAGCAAAACCACGAAGGTTTGTCCGATTCCAAGGTCATTATTGTTGGAGGTTCCTACTCT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3734R-2.in silico     421 AAGCAAAACCACGAAGGTTTGTCCGATTCCAAGGTCATTATTGTTGGAGGTTCCTACTCT 480


3734R-2.IR_full       481 GCCACTATGGTCACCTGGTT 500
                          ||||||||||||||||||||
3734R-2.in silico     481 GCCACTATGGTCACCTGGTT 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_142545.1  CG3734-RA (CG3734), mRNA 
0.41   NM_165258.1  CG31791-RA (CG31791), mRNA 
0.2   NM_143026.1  CG6879-RA (CG6879), mRNA 
0   NM_168196.1  CG32387-RA, transcript variant A (CG32387), mRNA 
0   NM_001043123.1  CG32387-RC, transcript variant C (CG32387), mRNA 
0   NM_168195.1  CG32387-RB, transcript variant B (CG32387), mRNA 
0   NM_001031949.1  CG33702-RA (CG33702), mRNA 
0   NM_130541.3  CG3638-RC, transcript variant C (CG3638), mRNA 
0   NM_166874.1  CG3638-RA, transcript variant A (CG3638), mRNA 
0   NM_166872.1  CG3638-RD, transcript variant D (CG3638), mRNA 
0   NM_166873.1  CG3638-RB, transcript variant B (CG3638), mRNA 
0   NM_143187.1  CG8932-RA (CG8932), mRNA 
0   NM_137628.1  CG13868-RA (CG13868), mRNA 
0   NM_001014465.1  CG31660-RC, transcript variant C (CG31660), mRNA 
0   NM_164600.2  CG31660-RB, transcript variant B (CG31660), mRNA 
0   NM_057843.2  CG14029-RA, transcript variant A (vri), mRNA 
0   NM_164639.1  CG14029-RC, transcript variant C (vri), mRNA 
0   NM_135567.2  CG6187-RA (RluA-2), mRNA 
0   NM_165865.2  CG16747-RB, transcript variant B (Oda), mRNA 
0   NM_165864.2  CG16747-RC, transcript variant C (Oda), mRNA 
0   NM_165863.2  CG16747-RA, transcript variant A (Oda), mRNA 
0   NM_078595.1  CG18319-RA (ben), mRNA 
0   NM_140012.1  CG5653-RA (CG5653), mRNA 
0   15  34  NM_142546.1  CG18493-RA (CG18493), mRNA 
0   NM_169438.1  CG6950-RC, transcript variant C (CG6950), mRNA 
0   NM_169437.2  CG6950-RA, transcript variant A (CG6950), mRNA 
0   NM_176463.1  CG6950-RD, transcript variant D (CG6950), mRNA 
0   NM_141864.1  CG6950-RB, transcript variant B (CG6950), mRNA 
0   NM_176104.1  CG33087-RC (CG33087), mRNA 
0   13  NM_001042799.1  CG10966-RB, transcript variant B (rdgA), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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