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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3645R-1 
 Symbol CG3645  Full Name CG3645 
 CG No CG3645  Old CG No CG3645 
 Synonyms CG3645 
 Accession No (Link to NCBI) NM_134663.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCCTTGGGATCCCCGCGTTAT 
 Primer Seq. 3'
aatctagaggtaccTGCTCTCTGGTCCTACCGTGG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCCTTGGGAT CCCCGCGTTA TGTAGTGGCT CCCATGGTGG ATCAAAGCGA GCTGGCCTGG 
0061 CGAATGCTGT GCCGACGCTA TGGCGCCGAA CTCTGCTACT CGCCAATGTA CCATGCGAAC 
0121 CTCTTCGCCA CAGACCCCAA GTATCGCAAG GATGCCTTGC AGACGTGTCC CGAGGACAGG 
0181 CCATTGATCA TCCAGTTCTG TGGCAACGAT GCTCAACAAA TCCTGGATGC AGCACTCCTG 
0241 GCGCAGGACC ACTGCGACGC GGTGGACATA AATTTGGGTT GTCCCCAGGC CATTGCCAAG 
0301 AGAGGTCACT ACGGATCCTT CCTGCAGGAT GAGTGGGAGC TGCTGACAGA GATTGTGAGC 
0361 ACACTGCACG CAAAACTAGC CGTTCCTGTA ACTTGCAAGA TTCGCATCTT CGAGGACCTT 
0421 GAGAAGACCA TTAGGTATGC CAAGATGCTG GAGGCGGCCG GCTGCCAGCT TTCTGACTGT 
0481 CCACGGTAGG ACCAGAGAGC A 
 in silico PCR Fragment
0001 TCCTTGGGAT CCCCGCGTTA TGTAGTGGCT CCCATGGTGG ATCAAAGCGA GCTGGCCTGG 
0061 CGAATGCTGT GCCGACGCTA TGGCGCCGAA CTCTGCTACT CGCCAATGTA CCATGCGAAC 
0121 CTCTTCGCCA CAGACCCCAA GTATCGCAAG GATGCCTTGC AGACGTGTCC CGAGGACAGG 
0181 CCATTGATCA TCCAGTTCTG TGGCAACGAT GCTCAACAAA TCCTGGATGC AGCACTCCTG 
0241 GCGCAGGACC ACTGCGACGC GGTGGACATA AATTTGGGTT GTCCCCAGGC CATTGCCAAG 
0301 AGAGGTCACT ACGGATCCTT CCTGCAGGAT GAGTGGGAGC TGCTGACAGA GATTGTGAGC 
0361 ACACTGCACG CAAAACTAGC CGTTCCTGTA ACTTGCAAGA TTCGCATCTT CGAGGACCTT 
0421 GAGAAGACCA TTAGGTATGC CAAGATGCTG GAGGCGGCCG GCTGCCAGC- TTCTGACTGT 
0481 CCACGGTAGG ACCAGAGAGC A 
 Assemble Data

3645R-1.IR_full       1   TCCTTGGGATCCCCGCGTTATGTAGTGGCTCCCATGGTGGATCAAAGCGAGCTGGCCTGG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3645R-1.in silico     1   TCCTTGGGATCCCCGCGTTATGTAGTGGCTCCCATGGTGGATCAAAGCGAGCTGGCCTGG 60


3645R-1.IR_full       61  CGAATGCTGTGCCGACGCTATGGCGCCGAACTCTGCTACTCGCCAATGTACCATGCGAAC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3645R-1.in silico     61  CGAATGCTGTGCCGACGCTATGGCGCCGAACTCTGCTACTCGCCAATGTACCATGCGAAC 120


3645R-1.IR_full       121 CTCTTCGCCACAGACCCCAAGTATCGCAAGGATGCCTTGCAGACGTGTCCCGAGGACAGG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3645R-1.in silico     121 CTCTTCGCCACAGACCCCAAGTATCGCAAGGATGCCTTGCAGACGTGTCCCGAGGACAGG 180


3645R-1.IR_full       181 CCATTGATCATCCAGTTCTGTGGCAACGATGCTCAACAAATCCTGGATGCAGCACTCCTG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3645R-1.in silico     181 CCATTGATCATCCAGTTCTGTGGCAACGATGCTCAACAAATCCTGGATGCAGCACTCCTG 240


3645R-1.IR_full       241 GCGCAGGACCACTGCGACGCGGTGGACATAAATTTGGGTTGTCCCCAGGCCATTGCCAAG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3645R-1.in silico     241 GCGCAGGACCACTGCGACGCGGTGGACATAAATTTGGGTTGTCCCCAGGCCATTGCCAAG 300


3645R-1.IR_full       301 AGAGGTCACTACGGATCCTTCCTGCAGGATGAGTGGGAGCTGCTGACAGAGATTGTGAGC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3645R-1.in silico     301 AGAGGTCACTACGGATCCTTCCTGCAGGATGAGTGGGAGCTGCTGACAGAGATTGTGAGC 360


3645R-1.IR_full       361 ACACTGCACGCAAAACTAGCCGTTCCTGTAACTTGCAAGATTCGCATCTTCGAGGACCTT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3645R-1.in silico     361 ACACTGCACGCAAAACTAGCCGTTCCTGTAACTTGCAAGATTCGCATCTTCGAGGACCTT 420


3645R-1.IR_full       421 GAGAAGACCATTAGGTATGCCAAGATGCTGGAGGCGGCCGGCTGCCAGCTTTCTGACTGT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
3645R-1.in silico     421 GAGAAGACCATTAGGTATGCCAAGATGCTGGAGGCGGCCGGCTGCCAGC-TTCTGACTGT 480


3645R-1.IR_full       481 CCACGGTAGGACCAGAGAGCA 501
                          |||||||||||||||||||||
3645R-1.in silico     481 CCACGGTAGGACCAGAGAGCA 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_164377.1  CG3645-RB, transcript variant B (CG3645), mRNA 
100   482  NM_134663.2  CG3645-RA, transcript variant A (CG3645), mRNA 
0   NM_136387.1  CG9430-RA (CG9430), mRNA 
0   NM_132760.3  CG9009-RA (CG9009), mRNA 
0   NM_164637.1  CG14025-RB, transcript variant B (Bsg25D), mRNA 
0   NM_164638.1  CG14025-RC, transcript variant C (Bsg25D), mRNA 
0   NM_168357.2  CG32045-RB, transcript variant B (fry), mRNA 
0   NM_001043133.1  CG32045-RD, transcript variant D (fry), mRNA 
0   NM_079787.2  CG6096-RA (HLHm5), mRNA 
0   NM_170623.4  CG12052-RA, transcript variant A (lola), mRNA 
0   NM_170386.1  CG11876-RA, transcript variant A (CG11876), mRNA 
0   NM_143411.2  CG11876-RD, transcript variant D (CG11876), mRNA 
0   NM_141366.2  CG10303-RA (Osi4), mRNA 
0   NM_137223.1  CG8302-RA (Cyp4aa1), mRNA 
0   NM_142264.1  CG10185-RA (CG10185), mRNA 
0   NM_135235.2  CG10805-RA (CG10805), mRNA 
0   NM_136080.1  CG10431-RA (CG10431), mRNA 
0   NM_137795.1  CG6613-RA (CG6613), mRNA 
0   NM_140361.1  CG11263-RA (CG11263), mRNA 
0   NM_079859.2  CG1438-RA (Cyp4c3), mRNA 
0   NM_079436.1  CG1438-RA (Cyp4c3), mRNA, small, or homeotic discs 1 CG8887-RA (ash1), mRNA 
0   NM_079503.2  CG9761-RA (Nep2), mRNA 
0   NM_134482.2  CG14207-RA, transcript variant A (CG14207), mRNA 
0   NM_167669.1  CG14207-RB, transcript variant B (CG14207), mRNA 
0   NM_140841.2  CG9666-RA (CG9666), mRNA 
0   NM_132932.2  CG9634-RA (CG9634), mRNA 
0   NM_167641.1  CG14195-RA (CG14195), mRNA 
0   NM_078999.2  CG3830-RA (vg), mRNA 
0   NM_169094.1  CG1093-RA, transcript variant A (plx), mRNA 
0   NM_169095.1  CG1093-RB, transcript variant B (plx), mRNA 

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