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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3500R-1 
 Symbol CG3500  Full Name CG3500 
 CG No CG3500  Old CG No CG3500 
 Synonyms BcDNA:AT03803, CG3500 
 Accession No (Link to NCBI) NM_137939.2 
 Inserted Chr. ll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCGCTGGCCATACAGATCGTG 
 Primer Seq. 3'
aatctagaggtaccCCCTGCTTCTTGTTACGCGAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCGCTGGCCA TACAGATCNG TGTTCCTCAC CCTGTCGATT GTGGCTGGTC TCTATTATCT 
0061 GGCGGAGCTG GCCGAGGAGT ACACGACGGC GGCTAGGAAG TGCATCCTAT TTCTGATCAG 
0121 CTTCACGATC TTCGTCTACA TCCTGCTGCT GCTGTTCGAG GACCTGCCGT GGAGCCTTAT 
0181 CATCTGCGGA CTGGTGNGCG CAGGGCTTCC ACCTGGGCAT CATGAGTGGA TTCCCCTTTC 
0241 GTGCGCCTGN TCTCGCTGCC GCTGCTGGGC TCCCTGGCCA TGCTGGTGGT CAATCACTTC 
0301 CTGGCCTTCC AGCATTTCGT CACTGTCTAT GTGCCTTTCA CGCAGGTGCT GGCTTACTTT 
0361 ACCATCTGCA TGTGGATCGT GCCCTTCGCC CTGTTCGTNC TCGCTGAGTG CGAATGACAG 
0421 TGTCCTGCCC ACCACCGTCA GCNGACCAGA GCCGGCGCAG TCCGGACGTG GTCAGCAACT 
0481 ACTTCTCGCG TAACAAGAAG CANGG 
 in silico PCR Fragment
0001 TCGCTGGCCA TACAGATC-G TGTTCCTCAC CCTGTCGATT GTGGCTGGTC TCTATTATCT 
0061 GGCGGAGCTG GCCGAGGAGT ACACGACGGC GGCTAGGAAG TGCATCCTAT TTCTGATCAG 
0121 CTTCACGATC TTCGTCTACA TCCTGCTGCT GCTGTTCGAG GACCTGCCGT GGAGCCTTAT 
0181 CATCTGCGGA CTGGTG-GCG CAGGGCTTCC ACCTGGGCAT CATGAGTGGA TTCCCC-TTC 
0241 GTGCGCCTGC TCTCGCTGCC GCTGCTGGGC TCCCTGGCCA TGCTGGTGGT CAATCACTTC 
0301 CTGGCCTTCC AGCATTTCGT CACTGTCTAT GTGCCTTTCA CGCAGGTGCT GGCTTACTTT 
0361 ACCATCTGCA TGTGGATCGT GCCCTTCGCC CTGTTCGT-C TCGCTGAGTG CGAATGACAG 
0421 TGTCCTGCCC ACCACCGTCA GC-GACCAGA GCCGGCGCAG TCCGGACGTG GTCAGCAACT 
0481 ACTTCTCGCG TAACAAGAAG CAGGG 
 Assemble Data

3500R-1.IR_full       1   TCGCTGGCCATACAGATCNGTGTTCCTCACCCTGTCGATTGTGGCTGGTCTCTATTATCT 60
                          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
3500R-1.in silico     1   TCGCTGGCCATACAGATC-GTGTTCCTCACCCTGTCGATTGTGGCTGGTCTCTATTATCT 60


3500R-1.IR_full       61  GGCGGAGCTGGCCGAGGAGTACACGACGGCGGCTAGGAAGTGCATCCTATTTCTGATCAG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3500R-1.in silico     61  GGCGGAGCTGGCCGAGGAGTACACGACGGCGGCTAGGAAGTGCATCCTATTTCTGATCAG 120


3500R-1.IR_full       121 CTTCACGATCTTCGTCTACATCCTGCTGCTGCTGTTCGAGGACCTGCCGTGGAGCCTTAT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3500R-1.in silico     121 CTTCACGATCTTCGTCTACATCCTGCTGCTGCTGTTCGAGGACCTGCCGTGGAGCCTTAT 180


3500R-1.IR_full       181 CATCTGCGGACTGGTGNGCGCAGGGCTTCCACCTGGGCATCATGAGTGGATTCCCCTTTC 240
                          |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
3500R-1.in silico     181 CATCTGCGGACTGGTG-GCGCAGGGCTTCCACCTGGGCATCATGAGTGGATTCCCC-TTC 240


3500R-1.IR_full       241 GTGCGCCTGNTCTCGCTGCCGCTGCTGGGCTCCCTGGCCATGCTGGTGGTCAATCACTTC 300
                          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
3500R-1.in silico     241 GTGCGCCTGCTCTCGCTGCCGCTGCTGGGCTCCCTGGCCATGCTGGTGGTCAATCACTTC 300


3500R-1.IR_full       301 CTGGCCTTCCAGCATTTCGTCACTGTCTATGTGCCTTTCACGCAGGTGCTGGCTTACTTT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3500R-1.in silico     301 CTGGCCTTCCAGCATTTCGTCACTGTCTATGTGCCTTTCACGCAGGTGCTGGCTTACTTT 360


3500R-1.IR_full       361 ACCATCTGCATGTGGATCGTGCCCTTCGCCCTGTTCGTNCTCGCTGAGTGCGAATGACAG 420
                          |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
3500R-1.in silico     361 ACCATCTGCATGTGGATCGTGCCCTTCGCCCTGTTCGT-CTCGCTGAGTGCGAATGACAG 420


3500R-1.IR_full       421 TGTCCTGCCCACCACCGTCAGCNGACCAGAGCCGGCGCAGTCCGGACGTGGTCAGCAACT 480
                          |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
3500R-1.in silico     421 TGTCCTGCCCACCACCGTCAGC-GACCAGAGCCGGCGCAGTCCGGACGTGGTCAGCAACT 480


3500R-1.IR_full       481 ACTTCTCGCGTAACAAGAAGCANGG 505
                          |||||||||||||||||||||| ||
3500R-1.in silico     481 ACTTCTCGCGTAACAAGAAGCAGGG 505

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_137939.2  CG3500-RA (CG3500), mRNA 
0.41   NM_001031869.1  CG15892-RB, transcript variant B (CG15892), mRNA 
0.41   NM_167069.1  CG15891-RA, transcript variant A (CG15891), mRNA 
0.2   NM_132066.1  CG4320-RA (raptor), mRNA 
0   10  NM_176232.1  CG15097-RB, transcript variant B (CG15097), mRNA 
0   10  NM_137533.3  CG15097-RA, transcript variant A (CG15097), mRNA 
0   15  NM_170027.2  CG31158-RA, transcript variant A (CG31158), mRNA 
0   15  NM_176541.1  CG31158-RB, transcript variant B (CG31158), mRNA 
0   15  NM_001038883.1  CG33988-RA (CG33988), mRNA 
0   NM_167865.1  CG32333-RA, transcript variant A (CG32333), mRNA 
0   12  61  NM_167335.1  CG4013-RC, transcript variant C (Smr), mRNA 
0   12  61  NM_167334.1  CG4013-RB, transcript variant B (Smr), mRNA 
0   12  61  NM_080536.2  CG4013-RA, transcript variant A (Smr), mRNA 
0   13  NM_165089.2  CG3479-RA, transcript variant A (osp), mRNA 
0   13  NM_078843.4  CG3479-RB, transcript variant B (osp), mRNA 
0   NM_130677.1  CG14418-RA (CG14418), mRNA 
0   NM_079802.2  CG6134-RA, transcript variant A (spz), mRNA 
0   NM_170315.1  CG6134-RC, transcript variant C (spz), mRNA 
0   NM_170313.1  CG6134-RJ, transcript variant J (spz), mRNA 
0   NM_170310.1  CG6134-RE, transcript variant E (spz), mRNA 
0   NM_170314.1  CG6134-RG, transcript variant G (spz), mRNA 
0   NM_170316.1  CG6134-RD, transcript variant D (spz), mRNA 
0   NM_170311.1  CG6134-RH, transcript variant H (spz), mRNA 
0   NM_170308.1  CG6134-RF, transcript variant F (spz), mRNA 
0   NM_170312.1  CG6134-RB, transcript variant B (spz), mRNA 
0   NM_170309.1  CG6134-RI, transcript variant I (spz), mRNA 
0   NM_167594.2  CG12348-RC, transcript variant C (Sh), mRNA 
0   NM_167595.3  CG12348-RE, transcript variant E (Sh), mRNA 
0   NM_137415.1  CG14487-RA (CG14487), mRNA 
0   NM_164618.1  CG14041-RA, transcript variant A (SP555), mRNA 

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