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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3423R-3 
 Symbol SA  Full Name Stromalin 
 CG No CG3423  Old CG No CG3423 
 Synonyms DmSA, SCC3, DSA, ESTS:92H2T, CG3423, SA, Scc3 
 Accession No (Link to NCBI) NM_057920.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Dourlen P, Fernandez-Gomez FJ, Dupont C, Grenier-Boley B, Bellenguez C, Obriot H, Caillierez R, Sottejeau Y, Chapuis J, Bretteville A, Abdelfettah F, Delay C, Malmanche N, Soininen H, Hiltunen M, Galas MC, Amouyel P, Sergeant N, Buée L, Lambert JC, Dermaut B.
Functional screening of Alzheimer risk loci identifies PTK2B as an in vivo modulator and early marker of Tau pathology.
Mol Psychiatry (2017) 22(6) 874-883 [ PubMed ID = 27113998 ] [ RRC reference ]

Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G.
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network.
Dev Cell (2010) 18(5) 862-76 [ PubMed ID = 20493818 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGACTACGAGGAATTGCACAG 
 Primer Seq. 3'
aatctagaggtaccCTTCGGTCATCCGTCGGATAA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GGACTACGAG GAATTGCACA GcGATGCCCT GAATGAGAGC ACCTCGGATG CGGACAGCCC 
0061 CACCAAACGG ATGACCAGGC TCCGAGCGCG GGGCGGAGTG CGGGACAAAC CGCCCATAAT 
0121 TGATGATGAC GAGGACGACT TACTTCGCGC CAATTGCGCG CAAACGAAAG ACTCCCGCCA 
0181 CCCGCAAGGG GCCAACAGAA CGCAAGGAAC GCGTTGAACG ACCGCGCAAG GAGCCCGTGG 
0241 ACAAGGGACA CCACGAGCGG ATAGACAGTG AGCGGGAGAT AACCACGGAC GAGAATAGTC 
0301 TCTACTATAT TGTGCGACAC TCGAAGAACC CTATTGCCAG CATTGTTGAT CAATGGATTG 
0361 AGCAGTATAA GGCAAACCGA GAAACGGCCC TGGTTGCACT GATGCAGTTT TTTATTAATG 
0421 CTAGTGGTTG CAAGGGAAAG ATATCCGAGG ACATTCAGTA TCCTGTTGAT CACACATCAA 
0481 TTATCCGACG GATGACCGAA G 
 in silico PCR Fragment
0001 GGACTACGAG GAATTGCACA GCGATGCCCT GAATGAGAGC ACCTCGGATG CGGACAGCCC 
0061 CACCAAACGG ATGACCAGGC TCAGAGCGCG GGGCGGAGTG CGGGACAAAC CGCCCATAAT 
0121 TGATGATGAC GAGGATGACT T-CTTCGCGC CAATCGCGCG CAAACGAAAG ACTCCCGCCA 
0181 CCCGCAAGGG GCCAACAGAA CGCAAGGAAC GCGTTGAACG ACCGCGCAAG GAGCCCGTCG 
0241 ACAAGGGACA TCACGAGCGG ATAGACAGTG AGCGGGAGAT AACCACGGAC GAGAATAGTC 
0301 TCTACTATAT TGTGCGACAC TCGAAGAACC CTATTGCTAG CATTGTTGAC CAATGGATTG 
0361 AGCAGTATAA GGCAAACCGA GAAACGGCCC TGGTTGCACT GATGCAGTTT TTTATTAATG 
0421 CTAGTGGTTG CAAGGGAAAG ATATCCGAGG ACATTCAGTA TCCTGTTGAT CACACATCAA 
0481 TTATCCGACG GATGACCGAA G 
 Assemble Data

3423R-3.IR_full       1   GGACTACGAGGAATTGCACAGCGATGCCCTGAATGAGAGCACCTCGGATGCGGACAGCCC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3423R-3.in silico     1   GGACTACGAGGAATTGCACAGCGATGCCCTGAATGAGAGCACCTCGGATGCGGACAGCCC 60


3423R-3.IR_full       61  CACCAAACGGATGACCAGGCTCCGAGCGCGGGGCGGAGTGCGGGACAAACCGCCCATAAT 120
                          |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
3423R-3.in silico     61  CACCAAACGGATGACCAGGCTCAGAGCGCGGGGCGGAGTGCGGGACAAACCGCCCATAAT 120


3423R-3.IR_full       121 TGATGATGACGAGGACGACTTACTTCGCGCCAATTGCGCGCAAACGAAAGACTCCCGCCA 180
                          ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
3423R-3.in silico     121 TGATGATGACGAGGATGACTT-CTTCGCGCCAATCGCGCGCAAACGAAAGACTCCCGCCA 180


3423R-3.IR_full       181 CCCGCAAGGGGCCAACAGAACGCAAGGAACGCGTTGAACGACCGCGCAAGGAGCCCGTGG 240
                          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
3423R-3.in silico     181 CCCGCAAGGGGCCAACAGAACGCAAGGAACGCGTTGAACGACCGCGCAAGGAGCCCGTCG 240


3423R-3.IR_full       241 ACAAGGGACACCACGAGCGGATAGACAGTGAGCGGGAGATAACCACGGACGAGAATAGTC 300
                          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
3423R-3.in silico     241 ACAAGGGACATCACGAGCGGATAGACAGTGAGCGGGAGATAACCACGGACGAGAATAGTC 300


3423R-3.IR_full       301 TCTACTATATTGTGCGACACTCGAAGAACCCTATTGCCAGCATTGTTGATCAATGGATTG 360
                          ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
3423R-3.in silico     301 TCTACTATATTGTGCGACACTCGAAGAACCCTATTGCTAGCATTGTTGACCAATGGATTG 360


3423R-3.IR_full       361 AGCAGTATAAGGCAAACCGAGAAACGGCCCTGGTTGCACTGATGCAGTTTTTTATTAATG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3423R-3.in silico     361 AGCAGTATAAGGCAAACCGAGAAACGGCCCTGGTTGCACTGATGCAGTTTTTTATTAATG 420


3423R-3.IR_full       421 CTAGTGGTTGCAAGGGAAAGATATCCGAGGACATTCAGTATCCTGTTGATCACACATCAA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3423R-3.in silico     421 CTAGTGGTTGCAAGGGAAAGATATCCGAGGACATTCAGTATCCTGTTGATCACACATCAA 480


3423R-3.IR_full       481 TTATCCGACGGATGACCGAAG 501
                          |||||||||||||||||||||
3423R-3.in silico     481 TTATCCGACGGATGACCGAAG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_057920.3  CG3423-RA (SA), mRNA 
0   NM_167401.1  CG1517-RB, transcript variant B (na), mRNA 
0   NM_167402.1  CG1517-RC, transcript variant C (na), mRNA 
0   NM_057457.3  CG7109-RA (mts), mRNA 
0   NM_080201.1  CG10528-RA, transcript variant A (fs(2)ltoPP43), mRNA 
0   NM_132362.1  CG1986-RA (CG1986), mRNA 
0   NM_079595.2  CG6920-RA (mus309), mRNA 
0   NM_132280.3  CG10648-RA (CG10648), mRNA 
0   NM_168366.2  CG32046-RB, transcript variant B (CG32046), mRNA 
0   NM_168367.1  CG32046-RA, transcript variant A (CG32046), mRNA 
0   NM_133003.2  CG32555-RB, transcript variant B (RhoGAPp190), mRNA 
0   NM_167573.1  CG32555-RC, transcript variant C (RhoGAPp190), mRNA 
0   NM_167572.1  CG32555-RA, transcript variant A (RhoGAPp190), mRNA 
0   NM_139717.1  CG5146-RA (CG5146), mRNA 
0   NM_136491.1  CG14766-RA (CG14766), mRNA 
0   NM_142692.1  CG5802-RA (CG5802), mRNA 
0   NM_057773.3  CG7538-RA (Mcm2), mRNA 
0   NM_205909.1  CG9124-RB, transcript variant B (eIF-3p40), mRNA 
0   NM_080095.2  CG9124-RA, transcript variant A (eIF-3p40), mRNA 
0   NM_135058.2  CG14040-RA (CG14040), mRNA 
0   NM_001043149.1  CG32203-RB (BG642378), mRNA 
0   NM_079603.2  CG5657-RA (Scgbeta), mRNA 
0   25  NM_168401.1  CG6611-RC, transcript variant C (ect), mRNA 
0   22  NM_079967.4  CG6611-RA, transcript variant A (ect), mRNA 
0   22  NM_168400.1  CG6611-RB, transcript variant B (ect), mRNA 
0   NM_143226.1  CG5467-RA (CG5467), mRNA 
0   NM_057701.3  CG5820-RD, transcript variant D (Gp150), mRNA 
0   NM_166529.1  CG5820-RC, transcript variant C (Gp150), mRNA 
0   NM_166528.1  CG5820-RB, transcript variant B (Gp150), mRNA 
0   NM_166527.1  CG5820-RA, transcript variant A (Gp150), mRNA 

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