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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
3423R-3 |
Symbol |
SA |
Full Name |
Stromalin |
CG No |
CG3423 |
Old CG No |
CG3423 |
Synonyms |
DmSA, SCC3, DSA, ESTS:92H2T, CG3423, SA, Scc3 |
Accession No (Link to NCBI) |
NM_057920.3 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Dourlen P, Fernandez-Gomez FJ, Dupont C, Grenier-Boley B, Bellenguez C, Obriot H, Caillierez R, Sottejeau Y, Chapuis J, Bretteville A, Abdelfettah F, Delay C, Malmanche N, Soininen H, Hiltunen M, Galas MC, Amouyel P, Sergeant N, Buée L, Lambert JC, Dermaut B. Functional screening of Alzheimer risk loci identifies PTK2B as an in vivo modulator and early marker of Tau pathology. Mol Psychiatry (2017) 22(6) 874-883
[
PubMed ID = 27113998
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G. A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGGACTACGAGGAATTGCACAG |
Primer Seq. 3' |
aatctagaggtaccCTTCGGTCATCCGTCGGATAA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GGACTACGAG GAATTGCACA GcGATGCCCT GAATGAGAGC ACCTCGGATG CGGACAGCCC
0061 CACCAAACGG ATGACCAGGC TCCGAGCGCG GGGCGGAGTG CGGGACAAAC CGCCCATAAT
0121 TGATGATGAC GAGGACGACT TACTTCGCGC CAATTGCGCG CAAACGAAAG ACTCCCGCCA
0181 CCCGCAAGGG GCCAACAGAA CGCAAGGAAC GCGTTGAACG ACCGCGCAAG GAGCCCGTGG
0241 ACAAGGGACA CCACGAGCGG ATAGACAGTG AGCGGGAGAT AACCACGGAC GAGAATAGTC
0301 TCTACTATAT TGTGCGACAC TCGAAGAACC CTATTGCCAG CATTGTTGAT CAATGGATTG
0361 AGCAGTATAA GGCAAACCGA GAAACGGCCC TGGTTGCACT GATGCAGTTT TTTATTAATG
0421 CTAGTGGTTG CAAGGGAAAG ATATCCGAGG ACATTCAGTA TCCTGTTGAT CACACATCAA
0481 TTATCCGACG GATGACCGAA G |
in silico PCR Fragment |
0001 GGACTACGAG GAATTGCACA GCGATGCCCT GAATGAGAGC ACCTCGGATG CGGACAGCCC
0061 CACCAAACGG ATGACCAGGC TCAGAGCGCG GGGCGGAGTG CGGGACAAAC CGCCCATAAT
0121 TGATGATGAC GAGGATGACT T-CTTCGCGC CAATCGCGCG CAAACGAAAG ACTCCCGCCA
0181 CCCGCAAGGG GCCAACAGAA CGCAAGGAAC GCGTTGAACG ACCGCGCAAG GAGCCCGTCG
0241 ACAAGGGACA TCACGAGCGG ATAGACAGTG AGCGGGAGAT AACCACGGAC GAGAATAGTC
0301 TCTACTATAT TGTGCGACAC TCGAAGAACC CTATTGCTAG CATTGTTGAC CAATGGATTG
0361 AGCAGTATAA GGCAAACCGA GAAACGGCCC TGGTTGCACT GATGCAGTTT TTTATTAATG
0421 CTAGTGGTTG CAAGGGAAAG ATATCCGAGG ACATTCAGTA TCCTGTTGAT CACACATCAA
0481 TTATCCGACG GATGACCGAA G |
Assemble Data |
3423R-3.IR_full 1 GGACTACGAGGAATTGCACAGCGATGCCCTGAATGAGAGCACCTCGGATGCGGACAGCCC 60
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3423R-3.in silico 1 GGACTACGAGGAATTGCACAGCGATGCCCTGAATGAGAGCACCTCGGATGCGGACAGCCC 60
3423R-3.IR_full 61 CACCAAACGGATGACCAGGCTCCGAGCGCGGGGCGGAGTGCGGGACAAACCGCCCATAAT 120
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3423R-3.in silico 61 CACCAAACGGATGACCAGGCTCAGAGCGCGGGGCGGAGTGCGGGACAAACCGCCCATAAT 120
3423R-3.IR_full 121 TGATGATGACGAGGACGACTTACTTCGCGCCAATTGCGCGCAAACGAAAGACTCCCGCCA 180
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3423R-3.in silico 121 TGATGATGACGAGGATGACTT-CTTCGCGCCAATCGCGCGCAAACGAAAGACTCCCGCCA 180
3423R-3.IR_full 181 CCCGCAAGGGGCCAACAGAACGCAAGGAACGCGTTGAACGACCGCGCAAGGAGCCCGTGG 240
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3423R-3.in silico 181 CCCGCAAGGGGCCAACAGAACGCAAGGAACGCGTTGAACGACCGCGCAAGGAGCCCGTCG 240
3423R-3.IR_full 241 ACAAGGGACACCACGAGCGGATAGACAGTGAGCGGGAGATAACCACGGACGAGAATAGTC 300
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3423R-3.in silico 241 ACAAGGGACATCACGAGCGGATAGACAGTGAGCGGGAGATAACCACGGACGAGAATAGTC 300
3423R-3.IR_full 301 TCTACTATATTGTGCGACACTCGAAGAACCCTATTGCCAGCATTGTTGATCAATGGATTG 360
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3423R-3.in silico 301 TCTACTATATTGTGCGACACTCGAAGAACCCTATTGCTAGCATTGTTGACCAATGGATTG 360
3423R-3.IR_full 361 AGCAGTATAAGGCAAACCGAGAAACGGCCCTGGTTGCACTGATGCAGTTTTTTATTAATG 420
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3423R-3.in silico 361 AGCAGTATAAGGCAAACCGAGAAACGGCCCTGGTTGCACTGATGCAGTTTTTTATTAATG 420
3423R-3.IR_full 421 CTAGTGGTTGCAAGGGAAAGATATCCGAGGACATTCAGTATCCTGTTGATCACACATCAA 480
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3423R-3.in silico 421 CTAGTGGTTGCAAGGGAAAGATATCCGAGGACATTCAGTATCCTGTTGATCACACATCAA 480
3423R-3.IR_full 481 TTATCCGACGGATGACCGAAG 501
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3423R-3.in silico 481 TTATCCGACGGATGACCGAAG 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_057920.3 |
CG3423-RA (SA), mRNA |
0 |
0 |
3 |
5 |
6 |
NM_167401.1 |
CG1517-RB, transcript variant B (na), mRNA |
0 |
0 |
3 |
5 |
6 |
NM_167402.1 |
CG1517-RC, transcript variant C (na), mRNA |
0 |
0 |
3 |
5 |
4 |
NM_057457.3 |
CG7109-RA (mts), mRNA |
0 |
0 |
3 |
3 |
8 |
NM_080201.1 |
CG10528-RA, transcript variant A (fs(2)ltoPP43), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_132362.1 |
CG1986-RA (CG1986), mRNA |
0 |
0 |
2 |
5 |
2 |
NM_079595.2 |
CG6920-RA (mus309), mRNA |
0 |
0 |
2 |
4 |
9 |
NM_132280.3 |
CG10648-RA (CG10648), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_168366.2 |
CG32046-RB, transcript variant B (CG32046), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_168367.1 |
CG32046-RA, transcript variant A (CG32046), mRNA |
0 |
0 |
1 |
5 |
6 |
NM_133003.2 |
CG32555-RB, transcript variant B (RhoGAPp190), mRNA |
0 |
0 |
1 |
5 |
6 |
NM_167573.1 |
CG32555-RC, transcript variant C (RhoGAPp190), mRNA |
0 |
0 |
1 |
5 |
6 |
NM_167572.1 |
CG32555-RA, transcript variant A (RhoGAPp190), mRNA |
0 |
0 |
1 |
4 |
9 |
NM_139717.1 |
CG5146-RA (CG5146), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_136491.1 |
CG14766-RA (CG14766), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_142692.1 |
CG5802-RA (CG5802), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_057773.3 |
CG7538-RA (Mcm2), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_205909.1 |
CG9124-RB, transcript variant B (eIF-3p40), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_080095.2 |
CG9124-RA, transcript variant A (eIF-3p40), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_135058.2 |
CG14040-RA (CG14040), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_001043149.1 |
CG32203-RB (BG642378), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_079603.2 |
CG5657-RA (Scgbeta), mRNA |
0 |
0 |
0 |
5 |
25 |
NM_168401.1 |
CG6611-RC, transcript variant C (ect), mRNA |
0 |
0 |
0 |
5 |
22 |
NM_079967.4 |
CG6611-RA, transcript variant A (ect), mRNA |
0 |
0 |
0 |
5 |
22 |
NM_168400.1 |
CG6611-RB, transcript variant B (ect), mRNA |
0 |
0 |
0 |
5 |
8 |
NM_143226.1 |
CG5467-RA (CG5467), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_057701.3 |
CG5820-RD, transcript variant D (Gp150), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_166529.1 |
CG5820-RC, transcript variant C (Gp150), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_166528.1 |
CG5820-RB, transcript variant B (Gp150), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_166527.1 |
CG5820-RA, transcript variant A (Gp150), mRNA |
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