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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
3319R-1 |
| Symbol |
Cdk7 |
Full Name |
Cyclin-dependent kinase 7 |
| CG No |
CG3319 |
Old CG No |
CG3319 |
| Synonyms |
cdk7, CDK7, CG3319, DmMO15, p40[MO15], DmCdk7, Dmcdk7, DmCDK7, Cdk7, cdk-7, dCdk7 |
| Accession No (Link to NCBI) |
NM_078489.1 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
pupal lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Shih HT, Chen WY, Liu KY, Shih ZS, Chen YJ, Hsieh PC, Kuo KL, Huang KH, Hsu PH, Liu YW, Chan SP, Lee HH, Tsai YC, Wu JT.
dBRWD3 Regulates Tissue Overgrowth and Ectopic Gene Expression Caused by Polycomb Group Mutations.
PLoS Genet (2016) 12(9) e1006262
[
PubMed ID = 27588417
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGCCCAATGCGAATGACAAAAC |
| Primer Seq. 3' |
aatctagaggtaccAAATGCGATTGGGCGAACCGA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 GCCCAATTGC GAATGACAAA ACGGAACGCT ATGCCAAGCT ATCCTTCCTC GGCGAGGGTC
0061 AGTTTGCCAC AGTTTACAAG GCGCGCGACA CGGTGACCAA CCAAATTGTG GCCGTAAAGA
0121 AGATCAAGAA GGGATCGCGC GAGGATGCAC GCGACGGTAT CAACAGGACA GCGCTGCGTG
0181 NAGATCAAGA TATTGCAGGA GCTGCAGCAC GAGAATATCA TTGGCTTGGT GGACGTTTTC
0241 GGTCAACTTT CGAATGTCTC GCTGGTTTTC GACTTCATGG ACACGGATCT GGAGGTGATC
0301 ATCAAGGATA ACAAGATTAT ATTAACGCAG GCGAACATCA AGGCCTATGC CATCATGACG
0361 CTAAAGGGTC TGGAGTATTT GCATCTCAAT TGGATACTGC ACCGCGATTT GAAGCCCAAC
0421 AATTTGCTGG TCAACAGCGA TGGCATCCTA AAGATTGGCG ATTTCGGTTT GGCCAAGTCC
0481 TTCGGTTCGC CCAATCGCAT TT |
| in silico PCR Fragment |
0001 GCCCAA-TGC GAATGACAAA ACGGAACGCT ATGCCAAGCT ATCCTTCCTC GGCGAGGGTC
0061 AGTTTGCCAC AGTTTACAAG GCGCGCGACA CGGTGACCAA CCAAATTGTG GCCGTAAAGA
0121 AGATCAAGAA GGGATCGCGC GAGGATGCAC GCGACGGTAT CAACAGGACA GCGCTGCGTG
0181 -AGATCAAGA TATTGCAGGA GCTGCAGCAC GAGAATATCA TTGGCTTGGT GGACGTTTTC
0241 GGTCAACTTT CGAATGTCTC GCTGGTTTTC GACTTCATGG ACACGGATCT GGAGGTGATC
0301 ATCAAGGATA ACAAGATTAT ATTAACGCAG GCGAACATCA AGGCCTATGC CATCATGACG
0361 CTAAAGGGTC TGGAGTATTT GCATCTCAAT TGGATACTGC ACCGCGATTT GAAGCCCAAC
0421 AATTTGCTGG TCAACAGCGA TGGCATCCTA AAGATTGGCG ATTTCGGTTT GGCCAAGTCC
0481 TTCGGTTCGC CCAATCGCAT TT |
| Assemble Data |
3319R-1.IR_full 1 GCCCAATTGCGAATGACAAAACGGAACGCTATGCCAAGCTATCCTTCCTCGGCGAGGGTC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
3319R-1.in silico 1 GCCCAA-TGCGAATGACAAAACGGAACGCTATGCCAAGCTATCCTTCCTCGGCGAGGGTC 60
3319R-1.IR_full 61 AGTTTGCCACAGTTTACAAGGCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3319R-1.in silico 61 AGTTTGCCACAGTTTACAAGGCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGA 120
3319R-1.IR_full 121 AGATCAAGAAGGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3319R-1.in silico 121 AGATCAAGAAGGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTG 180
3319R-1.IR_full 181 AGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTGGACGTTTTC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3319R-1.in silico 181 AGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTGGACGTTTTC 239
3319R-1.IR_full 241 GGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGACACGGATCTGGAGGTGATC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3319R-1.in silico 241 GGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGACACGGATCTGGAGGTGATC 299
3319R-1.IR_full 301 ATCAAGGATAACAAGATTATATTAACGCAGGCGAACATCAAGGCCTATGCCATCATGACG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3319R-1.in silico 301 ATCAAGGATAACAAGATTATATTAACGCAGGCGAACATCAAGGCCTATGCCATCATGACG 359
3319R-1.IR_full 361 CTAAAGGGTCTGGAGTATTTGCATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3319R-1.in silico 361 CTAAAGGGTCTGGAGTATTTGCATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAAC 419
3319R-1.IR_full 421 AATTTGCTGGTCAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3319R-1.in silico 421 AATTTGCTGGTCAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCC 479
3319R-1.IR_full 481 TTCGGTTCGCCCAATCGCATTT 501
||||||||||||||||||||||
3319R-1.in silico 481 TTCGGTTCGCCCAATCGCATTT 501
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_078489.1 |
CG3319-RA (Cdk7), mRNA |
| 0.62 |
3 |
3 |
4 |
9 |
NM_078937.3 |
CG2411-RA (ptc), mRNA |
| 0.41 |
2 |
2 |
3 |
2 |
NM_206488.1 |
CG3563-RB, transcript variant B (CG3563), mRNA |
| 0.41 |
2 |
2 |
3 |
2 |
NM_142132.2 |
CG3563-RA, transcript variant A (CG3563), mRNA |
| 0 |
0 |
3 |
3 |
2 |
NM_141852.1 |
CG12594-RA (CG12594), mRNA |
| 0 |
0 |
2 |
7 |
9 |
NM_166282.1 |
CG5170-RF, transcript variant F (Dp1), mRNA |
| 0 |
0 |
2 |
7 |
9 |
NM_166281.1 |
CG5170-RE, transcript variant E (Dp1), mRNA |
| 0 |
0 |
2 |
7 |
9 |
NM_166280.1 |
CG5170-RD, transcript variant D (Dp1), mRNA |
| 0 |
0 |
2 |
7 |
9 |
NM_206164.1 |
CG5170-RA, transcript variant A (Dp1), mRNA |
| 0 |
0 |
2 |
7 |
9 |
NM_079057.2 |
CG5170-RC, transcript variant C (Dp1), mRNA |
| 0 |
0 |
2 |
7 |
9 |
NM_206163.1 |
CG5170-RB, transcript variant B (Dp1), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_143623.1 |
CG1804-RA (kek6), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_141267.1 |
CG14666-RA (Tim17a2), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_166527.1 |
CG5820-RA, transcript variant A (Gp150), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_166528.1 |
CG5820-RB, transcript variant B (Gp150), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_166529.1 |
CG5820-RC, transcript variant C (Gp150), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_057701.3 |
CG5820-RD, transcript variant D (Gp150), mRNA |
| 0 |
0 |
1 |
4 |
6 |
NM_139371.1 |
CG13917-RA (CG13917), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_143096.2 |
CG11851-RA (CG11851), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_135554.2 |
CG5300-RA (Klp31E), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_142083.2 |
CG14355-RA (CG14355), mRNA |
| 0 |
0 |
1 |
3 |
10 |
NM_132074.1 |
CG3585-RA (CG3585), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_140636.2 |
CG4672-RA (TMS1), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_140971.1 |
CG5195-RA (CG5195), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_078585.3 |
CG2028-RB, transcript variant B (CkIalpha), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_167332.1 |
CG2028-RC, transcript variant C (CkIalpha), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_139835.2 |
CG8612-RA (mRpL50), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_167331.1 |
CG2028-RA, transcript variant A (CkIalpha), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_166569.1 |
CG12781-RB, transcript variant B (nahoda), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_079091.2 |
CG12781-RA, transcript variant A (nahoda), mRNA |
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