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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3289R-3 
 Symbol Ptpa  Full Name Phosphotyrosyl phosphatase activator 
 CG No CG3289  Old CG No CG3289 
 Synonyms PTPA, unnamed, DPTPA, CG3289, Ptpa 
 Accession No (Link to NCBI) NM_078742.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGGCGAGTGGCATTAACCAA 
 Primer Seq. 3'
aatctagaggtaccACGATGTCCCTTTCCTGCAGG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGGCGAGTG GCATTAACCA AGCAGCAGGT AAACTGCCGG CAATTGCAAA GAGGGTGCAA 
0061 AATCTCGGCG ACATGGGCGT TTGGCAAAAA TCCCGCGCCT TCCACGATTT AATTGGATAT 
0121 ATAAATGGCA CCAGTTCGGC CATTCAGGGC ATTAAAACCA CAGACGAGAT TTTCGAGTCG 
0181 GAAATGCTCA AGAAGCTGCT GCGGCTATTC GATGCACTGG AGAAATTGGT AGAGCAAAAT 
0241 CNCTCCATTG GAGCAGCCGC AGCGGTTCGG AAACAAAGCC TACAGGGATT GGGCGCAGGC 
0301 AATGCGGGAA TTGTTGCCCG AACTCCTAGA ACAGCTGTTG CCAGACGACA AGAAGCGATA 
0361 CCAGGTGGAG CTGGGGCAGT ATCTCACTGA ATCTTTCGGC AATGCCACCA GGATCGACTA 
0421 CGGCACCGGC CACGAGCTGT CCTTCCTCTT CTTCCTGTGC TCCCTGTTCA AGGCGGAGAT 
0481 CCTGCAGGAA AGGGACATCG T 
 in silico PCR Fragment
0001 ATGGCGAGTG GCATTAACCA AGCAGCAGGT AAACTGCCGG CAATTGCGAA GAAGGTGCAA 
0061 AATCTCGGCG ATATGGGCGT TTGGCAAAAA TCCCGCGCCT TCCACGATTT AATTGGATAT 
0121 ATAAATGGCA CCAGTTCGGC CATTCAGGGC ATTAAAACCA CAGACGAGAT TTTCGAGTCG 
0181 GAAATGCTCA AGAAGCTGCT GCGGCTATTC GATGCACTGG AGAAATTGGT AGAGCAAAAT 
0241 C-CTCCATTG GAGCAGCCGC AGCGGTTCGG AAACAAAGCC TACAGGGATT GGGCGCAGGC 
0301 AATGCGGGAA TTGTTGCCCG AACTCCTAGA ACAGCTGTTG CCAGACGACA AGAAGCGATA 
0361 CCAGGTGGAG CTGGGGCAGT ATCTCACTGA ATCTTTCGGC AATGCCACCA GGATCGACTA 
0421 CGGCACCGGC CACGAGCTGT CCTTCCTCTT CTTCCTGTGC TCCCTGTTCA AGGCGGAGAT 
0481 CCTGCAGGAA AGGGACATCG T 
 Assemble Data

3289R-3.IR_full       1   ATGGCGAGTGGCATTAACCAAGCAGCAGGTAAACTGCCGGCAATTGCAAAGAGGGTGCAA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
3289R-3.in silico     1   ATGGCGAGTGGCATTAACCAAGCAGCAGGTAAACTGCCGGCAATTGCGAAGAAGGTGCAA 60


3289R-3.IR_full       61  AATCTCGGCGACATGGGCGTTTGGCAAAAATCCCGCGCCTTCCACGATTTAATTGGATAT 120
                          ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
3289R-3.in silico     61  AATCTCGGCGATATGGGCGTTTGGCAAAAATCCCGCGCCTTCCACGATTTAATTGGATAT 120


3289R-3.IR_full       121 ATAAATGGCACCAGTTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3289R-3.in silico     121 ATAAATGGCACCAGTTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCG 180


3289R-3.IR_full       181 GAAATGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAGCAAAAT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3289R-3.in silico     181 GAAATGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAGCAAAAT 240


3289R-3.IR_full       241 CNCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAGGGATTGGGCGCAGGC 300
                          | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3289R-3.in silico     241 C-CTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAGGGATTGGGCGCAGGC 300


3289R-3.IR_full       301 AATGCGGGAATTGTTGCCCGAACTCCTAGAACAGCTGTTGCCAGACGACAAGAAGCGATA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3289R-3.in silico     301 AATGCGGGAATTGTTGCCCGAACTCCTAGAACAGCTGTTGCCAGACGACAAGAAGCGATA 360


3289R-3.IR_full       361 CCAGGTGGAGCTGGGGCAGTATCTCACTGAATCTTTCGGCAATGCCACCAGGATCGACTA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3289R-3.in silico     361 CCAGGTGGAGCTGGGGCAGTATCTCACTGAATCTTTCGGCAATGCCACCAGGATCGACTA 420


3289R-3.IR_full       421 CGGCACCGGCCACGAGCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGAT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3289R-3.in silico     421 CGGCACCGGCCACGAGCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGAT 480


3289R-3.IR_full       481 CCTGCAGGAAAGGGACATCGT 501
                          |||||||||||||||||||||
3289R-3.in silico     481 CCTGCAGGAAAGGGACATCGT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_078742.2  CG3289-RA (Ptpa), mRNA 
0   NM_168802.1  CG32210-RA (CG32210), mRNA 
0   NM_170095.1  CG31141-RA (CG31141), mRNA 
0   NM_136071.2  CG17321-RA (CG17321), mRNA 
0   NM_079395.2  CG9695-RA (Dab), mRNA 
0   NM_138040.2  CG3231-RA (CG3231), mRNA 
0   NM_132750.2  CG9519-RA (CG9519), mRNA 
0   NM_135825.2  CG7364-RA (CG7364), mRNA 
0   NM_136747.2  CG11761-RA (translin), mRNA 
0   NM_141972.1  CG5999-RA (CG5999), mRNA 
0   NM_176177.1  CG33139-RA (Ranbp11), mRNA 
0   NM_080335.2  CG2984-RA (Pp2C1), mRNA 
0   NM_144377.1  CG3706-RA (CG3706), mRNA 
0   NM_142246.2  CG4225-RA (CG4225), mRNA 
0   NM_079626.2  CG3302-RA (Crz), mRNA 
0   NM_134620.2  CG14618-RA (CG14618), mRNA 
0   NM_166558.1  CG3510-RC, transcript variant C (CycB), mRNA 
0   NM_132057.2  CG14447-RA (Grip), mRNA 
0   NM_166390.1  CG8929-RC, transcript variant C (CG8929), mRNA 
0   NM_166389.1  CG8929-RB, transcript variant B (CG8929), mRNA 
0   NM_137632.3  CG8929-RA, transcript variant A (CG8929), mRNA 
0   NM_166557.1  CG3510-RB, transcript variant B (CycB), mRNA 
0   NM_167189.2  CG32705-RA (CG32705), mRNA 
0   NM_166556.1  CG3510-RD, transcript variant D (CycB), mRNA 
0   NM_166555.1  CG3510-RA, transcript variant A (CycB), mRNA 
0   NM_138223.1  CG12502-RA (CG12502), mRNA 
0   NM_142135.1  CG14857-RA (CG14857), mRNA 
0   65  NM_175960.3  CG33196-RB (dp), mRNA 
0   NM_140117.1  CG14163-RA (CG14163), mRNA 
0   NM_144202.1  CG15213-RA (CG15213), mRNA 

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