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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 32381R-1 
 Symbol unc-13-4A  Full Name unc-13-4A 
 CG No CG32381  Old CG No CG32381 
 Synonyms CG14833, CG8608, dunc-13-4A, CG14832, CG14831, CG32381, unc-13-4A 
 Accession No (Link to NCBI) NM_139839.3 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTACGGACACCTTTCACCTGGA 
 Primer Seq. 3'
aatctagaggtaccCATATCTGGCCATGGCGCAGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TACGGACACC TTTCACCTGG ACATTTGGGA CCACGACGAC GAAAGCTGCG TCATGGACGC 
0061 CGTTTCGCGA CTGAACGAGG TCCGTGGCGT CCGTGGACTG GGTCGCTTCT TCAAACAGGT 
0121 GTGCCAATCC GCTCGCCAGG GCTCACAGGA CGATTTCCTC GGCTCCGTGA ACTATTCCGC 
0181 TGTCGGAGAT CCCGTCCACC GGACTGGATG CCTGGTTCAA GCTGGAAGCA CGCAGTNCAT 
0241 CGCAGCACCG TGCAAGGTCG CATCCGGCTC AAGTTGTGGC TATCGACTCG CGAGGATCGG 
0301 AACACTGTTA GCGAGGAGAA CCATGAGCAG CAGATCCATA AGGTGGAGCA GCTCCAAAGG 
0361 GTGTTCATGC AGCACGAGGT TACCACGCAC GAGCCTTCGT GGACCTGGTG TGGTGAcCTT 
0421 CCGGGTCCGG CTCTGACCAT TCTGCATCAG CTGGCCGTGC AGTCGGATCT CTCGGACTTA 
0481 CACTGCGNCA TGGCCAGATA TG 
 in silico PCR Fragment
0001 TACGGACACC TTTCACCTGG ACATTTGGGA CCACGACGAC GAAAGCTGCG TCATGGACGC 
0061 CGTTTCGCGA CTGAACGAGG TCCGTGGCGT CCGTGGACTG GGTCGCTTCT TCAAACAGGT 
0121 GTGCCAATCC GCTCGCCAGG GCTCACAGGA CGATTTCCTC GGCTCCGTGA AC-ATTCCGC 
0181 TGTCGGAGAT CCCGTCCACC GGACTGGATG CCTGGTTCAA GCTGGAAGCA CGCAGT-CAT 
0241 CGCAGCACCG TGCAAGGTCG CATCCGGCTC AAGTTGTGGC TATCGACTCG CGAGGATCGG 
0301 AACACTGTTA GCGAGGAGAA CCATGAGCAG CAGATCCATA AGGTGGAGCA GCTCCAAAGG 
0361 GTGTTCATGC AGCACGAGGT TACCACGCAC GAGCCTTCGT GGACCTGGTG TGGTGACCTT 
0421 CCGGGTCCGG CTCTGACCAT TCTGCATCAG CTGGCCGTGC AGTCGGATCT CTCGGACTTA 
0481 CACTGCGCCA TGGCCAGATA TG 
 Assemble Data

32381R-1.IR_full       1   TACGGACACCTTTCACCTGGACATTTGGGACCACGACGACGAAAGCTGCGTCATGGACGC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32381R-1.in silico     1   TACGGACACCTTTCACCTGGACATTTGGGACCACGACGACGAAAGCTGCGTCATGGACGC 60


32381R-1.IR_full       61  CGTTTCGCGACTGAACGAGGTCCGTGGCGTCCGTGGACTGGGTCGCTTCTTCAAACAGGT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32381R-1.in silico     61  CGTTTCGCGACTGAACGAGGTCCGTGGCGTCCGTGGACTGGGTCGCTTCTTCAAACAGGT 120


32381R-1.IR_full       121 GTGCCAATCCGCTCGCCAGGGCTCACAGGACGATTTCCTCGGCTCCGTGAACTATTCCGC 180
                           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
32381R-1.in silico     121 GTGCCAATCCGCTCGCCAGGGCTCACAGGACGATTTCCTCGGCTCCGTGAAC-ATTCCGC 180


32381R-1.IR_full       181 TGTCGGAGATCCCGTCCACCGGACTGGATGCCTGGTTCAAGCTGGAAGCACGCAGTNCAT 240
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
32381R-1.in silico     181 TGTCGGAGATCCCGTCCACCGGACTGGATGCCTGGTTCAAGCTGGAAGCACGCAGT-CAT 240


32381R-1.IR_full       241 CGCAGCACCGTGCAAGGTCGCATCCGGCTCAAGTTGTGGCTATCGACTCGCGAGGATCGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32381R-1.in silico     241 CGCAGCACCGTGCAAGGTCGCATCCGGCTCAAGTTGTGGCTATCGACTCGCGAGGATCGG 300


32381R-1.IR_full       301 AACACTGTTAGCGAGGAGAACCATGAGCAGCAGATCCATAAGGTGGAGCAGCTCCAAAGG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32381R-1.in silico     301 AACACTGTTAGCGAGGAGAACCATGAGCAGCAGATCCATAAGGTGGAGCAGCTCCAAAGG 360


32381R-1.IR_full       361 GTGTTCATGCAGCACGAGGTTACCACGCACGAGCCTTCGTGGACCTGGTGTGGTGACCTT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32381R-1.in silico     361 GTGTTCATGCAGCACGAGGTTACCACGCACGAGCCTTCGTGGACCTGGTGTGGTGACCTT 420


32381R-1.IR_full       421 CCGGGTCCGGCTCTGACCATTCTGCATCAGCTGGCCGTGCAGTCGGATCTCTCGGACTTA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32381R-1.in silico     421 CCGGGTCCGGCTCTGACCATTCTGCATCAGCTGGCCGTGCAGTCGGATCTCTCGGACTTA 480


32381R-1.IR_full       481 CACTGCGNCATGGCCAGATATG 502
                           ||||||| ||||||||||||||
32381R-1.in silico     481 CACTGCGCCATGGCCAGATATG 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_139839.3  CG32381-RA (unc-13-4A), mRNA 
0.2   NM_132060.2  CG5941-RA (CG5941), mRNA 
0   NM_057771.2  CG1864-RB, transcript variant B (Hr38), mRNA 
0   NM_176065.1  CG1864-RC, transcript variant C (Hr38), mRNA 
0   NM_001038974.1  CG34034-RA (CG34034), mRNA 
0   NM_168039.1  CG32264-RB, transcript variant B (CG32264), mRNA 
0   NM_142619.1  CG4362-RA (CG4362), mRNA 
0   NM_168038.1  CG32264-RD, transcript variant D (CG32264), mRNA 
0   NM_206268.1  CG32264-RC, transcript variant C (CG32264), mRNA 
0   NM_168037.1  CG32264-RA, transcript variant A (CG32264), mRNA 
0   NM_169693.1  CG4261-RA (Hel89B), mRNA 
0   NM_140829.2  CG6812-RA (CG6812), mRNA 
0   NM_079764.2  CG6875-RA (asp), mRNA 
0   NM_206035.1  CG9453-RH, transcript variant H (Spn4), mRNA 
0   NM_206032.1  CG9453-RK, transcript variant K (Spn4), mRNA 
0   NM_080216.2  CG9453-RB, transcript variant B (Spn4), mRNA 
0   NM_165496.2  CG9453-RA, transcript variant A (Spn4), mRNA 
0   NM_206034.1  CG9453-RI, transcript variant I (Spn4), mRNA 
0   NM_206033.1  CG9453-RJ, transcript variant J (Spn4), mRNA 
0   NM_165495.2  CG9453-RC, transcript variant C (Spn4), mRNA 
0   NM_206039.1  CG9453-RD, transcript variant D (Spn4), mRNA 
0   NM_206036.1  CG9453-RG, transcript variant G (Spn4), mRNA 
0   NM_206038.1  CG9453-RE, transcript variant E (Spn4), mRNA 
0   NM_206037.1  CG9453-RF, transcript variant F (Spn4), mRNA 
0   NM_141867.2  CG6962-RA (CG6962), mRNA 
0   NM_132804.1  CG9203-RA (CG9203), mRNA 
0   12  51  NM_167319.3  CG32656-RA (CG32656), mRNA 
0   12  NM_169845.1  CG31043-RA, transcript variant A (gukh), mRNA 
0   NM_140481.1  CG13461-RA (CG13461), mRNA 
0   NM_080066.2  CG12172-RA (Spn43Aa), mRNA 

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