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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
32101R-3 |
| Symbol |
CG10638 |
Full Name |
CG10638 |
| CG No |
CG10638 |
Old CG No |
CG32101 |
| Synonyms |
anon-WO0172774.89, CG32101, CG10638 |
| Accession No (Link to NCBI) |
NM_206346.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Vinayagam A, Zirin J, Roesel C, Hu Y, Yilmazel B, Samsonova AA, Neumüller RA, Mohr SE, Perrimon N.
Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.
Nat Methods (2014) 11(1) 94-9
[
PubMed ID = 24240319
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTTCTGGTCACAAAGCTGTGGG |
| Primer Seq. 3' |
aatctagaggtaccTGTCTTGCCGTATTTCGCTGC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TTCTGGTCAC AAAGCTGTGG GACATATACC ACGAACCCAA GATGGTGAAA TACGCCTGTG
0061 ATATGCAATT AAAGCTACTG GGCGTGGACT ATATAGATCT ATATCTGATG CATTCGCCGG
0121 TGGGCGTGGA CTACATCTCT GATGAAGATC TGATGCCCCA CGAGAATGGC CAGCTGAGGA
0181 CCAACGATGT GGACTATGTG GACACCTACA GAAGTATGGA GCAACTGGTG CATCTGGGGC
0241 TGGTGCGCAG CTTGGNGATT GTCCAACTTT AATGCCAATC AGCTGAAGAG ATTACTGGAA
0301 AACTGCCAAA TCAAGCCGGC AAACCTACAA ATAGAATGTC ATCCGGAATT GGTGCAAGTC
0361 CCATTAATTG AGCTCTGTAA ATTTCACAAT ATCACCGTGG TTGCCTATTC GCCACTGGGG
0421 CGTCCCAAAG CCTGCAATCC GCTGCCCGAT TACTACACTG ATTCCAAGCT ACTGGCGTTG
0481 GCAGCGAAAT ACGGCAAGAC A |
| in silico PCR Fragment |
0001 TTCTGGTCAC AAAGCTGTGG GACATATACC ACGAACCCAA GATGGTGAAA TACGCCTGTG
0061 ATATGCAATT AAAGCTACTG GGCGTGGACT ATATAGATCT ATATCTGATG CATTCGCCGG
0121 TGGGCGTGGA CTACATCTCT GATGAAGATC TGATGCCCCA CGAGAATGGC CAGCTGAGGA
0181 CCAACGATGT GGACTATGTG GACACCTACA GAAGTATGGA GCAACTGGTG CATCTGGGGC
0241 TGGTGCGCAG CTTGG-GATT GTCCAACTTT AATGCCAATC AGCTGAAGAG ATTACTGGAA
0301 AACTGCCAAA TCAAGCCGGC AAACCTACAA ATAGAATGTC ATCCGGAATT GGTGCAAGTC
0361 CCATTAATTG AGCTCTGTAA ATTTCACAAT ATCACCGTGG TTGCCTATTC GCCACTGGGG
0421 CGTCCCAAAG CCTGCAATCC GCTGCCCGAT TACTACACTG ATTCCAAGCT ACTGGCGTTG
0481 GCAGCGAAAT ACGGCAAGAC A |
| Assemble Data |
32101R-3.IR_full 1 TTCTGGTCACAAAGCTGTGGGACATATACCACGAACCCAAGATGGTGAAATACGCCTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32101R-3.in silico 1 TTCTGGTCACAAAGCTGTGGGACATATACCACGAACCCAAGATGGTGAAATACGCCTGTG 60
32101R-3.IR_full 61 ATATGCAATTAAAGCTACTGGGCGTGGACTATATAGATCTATATCTGATGCATTCGCCGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32101R-3.in silico 61 ATATGCAATTAAAGCTACTGGGCGTGGACTATATAGATCTATATCTGATGCATTCGCCGG 120
32101R-3.IR_full 121 TGGGCGTGGACTACATCTCTGATGAAGATCTGATGCCCCACGAGAATGGCCAGCTGAGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32101R-3.in silico 121 TGGGCGTGGACTACATCTCTGATGAAGATCTGATGCCCCACGAGAATGGCCAGCTGAGGA 180
32101R-3.IR_full 181 CCAACGATGTGGACTATGTGGACACCTACAGAAGTATGGAGCAACTGGTGCATCTGGGGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32101R-3.in silico 181 CCAACGATGTGGACTATGTGGACACCTACAGAAGTATGGAGCAACTGGTGCATCTGGGGC 240
32101R-3.IR_full 241 TGGTGCGCAGCTTGGNGATTGTCCAACTTTAATGCCAATCAGCTGAAGAGATTACTGGAA 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
32101R-3.in silico 241 TGGTGCGCAGCTTGG-GATTGTCCAACTTTAATGCCAATCAGCTGAAGAGATTACTGGAA 300
32101R-3.IR_full 301 AACTGCCAAATCAAGCCGGCAAACCTACAAATAGAATGTCATCCGGAATTGGTGCAAGTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32101R-3.in silico 301 AACTGCCAAATCAAGCCGGCAAACCTACAAATAGAATGTCATCCGGAATTGGTGCAAGTC 360
32101R-3.IR_full 361 CCATTAATTGAGCTCTGTAAATTTCACAATATCACCGTGGTTGCCTATTCGCCACTGGGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32101R-3.in silico 361 CCATTAATTGAGCTCTGTAAATTTCACAATATCACCGTGGTTGCCTATTCGCCACTGGGG 420
32101R-3.IR_full 421 CGTCCCAAAGCCTGCAATCCGCTGCCCGATTACTACACTGATTCCAAGCTACTGGCGTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32101R-3.in silico 421 CGTCCCAAAGCCTGCAATCCGCTGCCCGATTACTACACTGATTCCAAGCTACTGGCGTTG 480
32101R-3.IR_full 481 GCAGCGAAATACGGCAAGACA 501
|||||||||||||||||||||
32101R-3.in silico 481 GCAGCGAAATACGGCAAGACA 501
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_206346.1 |
CG10638-RB, transcript variant B (CG10638), mRNA |
| 0 |
0 |
2 |
5 |
7 |
NM_132066.1 |
CG4320-RA (raptor), mRNA |
| 0 |
0 |
2 |
4 |
5 |
NM_205940.1 |
CG10595-RB, transcript variant B (d), mRNA |
| 0 |
0 |
2 |
4 |
5 |
NM_175991.1 |
CG10595-RA, transcript variant A (d), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_142152.1 |
CG14861-RA (CG14861), mRNA |
| 0 |
0 |
1 |
9 |
5 |
NM_079357.2 |
CG7250-RA (Toll-6), mRNA |
| 0 |
0 |
1 |
6 |
7 |
NM_169659.2 |
CG14869-RA, transcript variant A (CG14869), mRNA |
| 0 |
0 |
1 |
6 |
7 |
NM_206496.1 |
CG14869-RB, transcript variant B (CG14869), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_142648.2 |
CG5494-RA (CG5494), mRNA |
| 0 |
0 |
1 |
4 |
16 |
NM_136391.2 |
CG9436-RA (CG9436), mRNA |
| 0 |
0 |
1 |
4 |
5 |
NM_142574.2 |
CG11407-RA (CG11407), mRNA |
| 0 |
0 |
1 |
4 |
5 |
NM_164942.1 |
CG17124-RB, transcript variant B (CG17124), mRNA |
| 0 |
0 |
1 |
4 |
5 |
NM_135606.2 |
CG17124-RA, transcript variant A (CG17124), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_165027.1 |
CG31849-RA (CG31849), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_057511.3 |
CG3936-RA (N), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_166687.1 |
CG16932-RB, transcript variant B (Eps-15), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_166686.1 |
CG16932-RC, transcript variant C (Eps-15), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_138121.2 |
CG16932-RA, transcript variant A (Eps-15), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_165242.1 |
CG7210-RA, transcript variant A (kel), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_057241.2 |
CG7210-RB, transcript variant B (kel), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_130691.1 |
CG4116-RA (CG4116), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_135760.1 |
CG5204-RA (CG5204), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_140749.2 |
CG5998-RA (Adgf-B), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_165331.2 |
CG31687-RA (CG31687), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_136192.2 |
CG2508-RA (cdc23), mRNA |
| 0 |
0 |
0 |
18 |
33 |
NM_168501.1 |
CG10638-RA, transcript variant A (CG10638), mRNA |
| 0 |
0 |
0 |
7 |
6 |
NM_137817.2 |
CG3413-RB, transcript variant B (wdp), mRNA |
| 0 |
0 |
0 |
7 |
6 |
NM_166526.1 |
CG3413-RD, transcript variant D (wdp), mRNA |
| 0 |
0 |
0 |
7 |
6 |
NM_166525.1 |
CG3413-RC, transcript variant C (wdp), mRNA |
| 0 |
0 |
0 |
7 |
6 |
NM_166524.1 |
CG3413-RA, transcript variant A (wdp), mRNA |
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