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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3208R-1 
 Symbol RhoGAP5A  Full Name RhoGAP5A 
 CG No CG3208  Old CG No CG3208 
 Synonyms CG3208, RhoGAP5A 
 Accession No (Link to NCBI) NM_167040.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCTCCTCTATAAGCCCGGCGT 
 Primer Seq. 3'
aatctagaggtaccGCTTCAGATCCGGCACACACT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GCTCCTCTAT AAGCCCGGCG TGGGACACTA TCTGCGCGGC CAGGACAAGC GCTTCGACAC 
0061 GGTGCACGAC ATGGTCGCCG ACGGGCTGAT CAACTTTCAC ATGCAGCTCC ACGCCAGTCC 
0121 CATCATCCAG CAGATTAATC AACAGACCAA GAACTGCTAC CAGCAAAGCC CATACATGAC 
0181 TTTAAATGGC CGGAAACTTA GGGCTCTGTC CAATGAGCTG GGCAAGGCCG CCGCCAAGGA 
0241 ATCGAAGGAA TCGCCAGCTG AGGAGAAGGA GCAGAAGCAG GAGGAGCCAC CGCCTCCAGC 
0301 CGTGGATCCC ATGCCGCTGG TCTACGAGAA GCCGCATCAC TTCAAGGTGC ACACGTTTAA 
0361 GGGGCTCAAT TGGTGCGAGT TCTGCGCCAA CTTCTTGTGG GGATTCACCG CCCAGGGCGT 
0421 CAAGTGTGAG GCGTGCGGCA TTTGTGGCGc ACAGCAAGGT GCTCCGAACT GGTGCCGCCC 
0481 AAGTGTGTGC CGGATCTGAT AGNC 
 in silico PCR Fragment
0001 GCTCCTCTAT AAGCCCGGCG TGGGACACTA TCTGCGCGGC CAGGACAAGC GCTTCGACAC 
0061 GGTGCACGAC ATGGTCGCCG ACGGGCTGAT CAACTTTCAC ATGCAGCTCC ACGCCAGTCC 
0121 CATCATCCAG CAGATTAACC AGCAGACCAA GAACTGCTAC CAGCAAAGCC CATACATGAC 
0181 CTTAAATGGC CGGAAACTTA GGGCTCTGTC CAATGAGCTG GGCAAGGCCG CCGCCAAGGA 
0241 ATCGAAGGAA TCGCCAGCCG AGGAGAAGGA GCAGAAGCAG GAGGAGCCAC CGCCTCCAGC 
0301 CGTGGATCCC ATGCCGCTGG TCTACGAGAA GCCGCATCAC TTCAAGGTGC ACACGTTTAA 
0361 GGGGCTCAAT TGGTGCGAGT TCTGCGCCAA CTTCTTGTGG GGATTCACCG CCCAGGGCGT 
0421 CAAGTGTGAG GCGTGCGGC- TTTGTGGCGC ACAGCAA-GT GCTCCGAACT GGTGCCGCCC 
0481 AAGTGTGTGC CGGATCTGA- AG-C 
 Assemble Data

3208R-1.IR_full       1   GCTCCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGACAAGCGCTTCGACAC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3208R-1.in silico     1   GCTCCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGACAAGCGCTTCGACAC 60


3208R-1.IR_full       61  GGTGCACGACATGGTCGCCGACGGGCTGATCAACTTTCACATGCAGCTCCACGCCAGTCC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3208R-1.in silico     61  GGTGCACGACATGGTCGCCGACGGGCTGATCAACTTTCACATGCAGCTCCACGCCAGTCC 120


3208R-1.IR_full       121 CATCATCCAGCAGATTAATCAACAGACCAAGAACTGCTACCAGCAAAGCCCATACATGAC 180
                          |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
3208R-1.in silico     121 CATCATCCAGCAGATTAACCAGCAGACCAAGAACTGCTACCAGCAAAGCCCATACATGAC 180


3208R-1.IR_full       181 TTTAAATGGCCGGAAACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGA 240
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3208R-1.in silico     181 CTTAAATGGCCGGAAACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGA 240


3208R-1.IR_full       241 ATCGAAGGAATCGCCAGCTGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCTCCAGC 300
                          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
3208R-1.in silico     241 ATCGAAGGAATCGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCTCCAGC 300


3208R-1.IR_full       301 CGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCAAGGTGCACACGTTTAA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3208R-1.in silico     301 CGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCAAGGTGCACACGTTTAA 360


3208R-1.IR_full       361 GGGGCTCAATTGGTGCGAGTTCTGCGCCAACTTCTTGTGGGGATTCACCGCCCAGGGCGT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3208R-1.in silico     361 GGGGCTCAATTGGTGCGAGTTCTGCGCCAACTTCTTGTGGGGATTCACCGCCCAGGGCGT 420


3208R-1.IR_full       421 CAAGTGTGAGGCGTGCGGCATTTGTGGCGCACAGCAAGGTGCTCCGAACTGGTGCCGCCC 480
                          ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
3208R-1.in silico     421 CAAGTGTGAGGCGTGCGGC-TTTGTGGCGCACAGCAA-GTGCTCCGAACTGGTGCCGCCC 480


3208R-1.IR_full       481 AAGTGTGTGCCGGATCTGATAGNC 504
                          ||||||||||||||||||| || |
3208R-1.in silico     481 AAGTGTGTGCCGGATCTGA-AG-C 504

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_132007.2  CG3208-RB, transcript variant B (RhoGAP5A), mRNA 
100   482  NM_167040.2  CG3208-RA, transcript variant A (RhoGAP5A), mRNA 
0.82   NM_132443.1  CG16922-RA (CG16922), mRNA 
0.41   11  NM_133030.2  CG6842-RA (CG6842), mRNA 
0.41   NM_169456.1  CG4810-RA (CG4810), mRNA 
0.2   NM_134742.2  CG5001-RA (CG5001), mRNA 
0   25  38  NM_133159.1  CG14200-RA (CG14200), mRNA 
0   NM_139598.2  CG14989-RB (CG14989), mRNA 
0   NM_169384.2  CG31386-RA (CG31386), mRNA 
0   13  12  NM_168039.1  CG32264-RB, transcript variant B (CG32264), mRNA 
0   13  12  NM_168037.1  CG32264-RA, transcript variant A (CG32264), mRNA 
0   13  12  NM_206268.1  CG32264-RC, transcript variant C (CG32264), mRNA 
0   13  12  NM_168038.1  CG32264-RD, transcript variant D (CG32264), mRNA 
0   NM_141132.1  CG14460-RA (CG14460), mRNA 
0   NM_079749.4  CG5405-RA, transcript variant A (KrT95D), mRNA 
0   NM_132350.1  CG15321-RA (CG15321), mRNA 
0   NM_138229.1  CG13908-RA (CG13908), mRNA 
0   NM_001043125.1  CG34158-RC, transcript variant C (SP2523), mRNA 
0   NM_001043126.1  CG34158-RD, transcript variant D (SP2523), mRNA 
0   NM_168450.1  CG6210-RB, transcript variant B (srt), mRNA 
0   NM_140188.2  CG6210-RA, transcript variant A (srt), mRNA 
0   34  NM_132437.1  CG15207-RA (CG15207), mRNA 
0   12  NM_079768.2  CG6238-RA, transcript variant A (ssh), mRNA 
0   NM_170160.1  CG6238-RA, transcript variant A (ssh), mRNA, small, or homeotic discs 2 CG6677-RB, transcript variant B (ash2), mRNA 
0   NM_169545.1  CG9374-RF, transcript variant F (lkb1), mRNA 
0   NM_169547.1  CG9374-RI, transcript variant I (lkb1), mRNA 
0   NM_169542.1  CG9374-RC, transcript variant C (lkb1), mRNA 
0   NM_169546.1  CG9374-RH, transcript variant H (lkb1), mRNA 
0   NM_142045.2  CG9374-RB, transcript variant B (lkb1), mRNA 
0   NM_169543.1  CG9374-RD, transcript variant D (lkb1), mRNA 

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