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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
32049R-1 |
Symbol |
CG33205 |
Full Name |
CG33205 |
CG No |
CG33205 |
Old CG No |
CG32049 |
Synonyms |
CG8154, CG8163, CG14172, CG32051, CG32049, BcDNA:RH19933, BcDNA:RE55923, CG33205 |
Accession No (Link to NCBI) |
NM_176312.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Mummery-Widmer JL, Yamazaki M, Stoeger T, Novatchkova M, Bhalerao S, Chen D, Dietzl G, Dickson BJ, Knoblich JA. Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. Nature (2009) 458(7241) 987-92
[
PubMed ID = 19363474
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTCCGTCTTACGATGGCCAGCA |
Primer Seq. 3' |
aatctagaggtaccGCCATTTCAAATCTCCGCGCA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TCCGTCTTAC GATGGCCAGC AGCCTGGAGC ACAGTGGCAA CAGCAACAGC AGCAGCAGCA
0061 GGTTCCGCAG CAGCAGTATC AGCCTCAATC GCAGGCTCAG GCGCCCTATC AGCCACCACA
0121 GTGNAACCAG CCGCAGCAGC AGCAGCAGCA GCCANTCGTA CCAGGCTTCA CCGTACCAAC
0181 AGCAGCAACA GCAACAGCCA TCCTATTACC CACAGCAAAA TGGTGGCTCG ACCNTATGCT
0241 CAACCCCCAT ACAATTCTTA TTCGCAGCCC CAGTTGCCCT ACTCGCAGGA TCAGACTGAT
0301 CTGCAGCAGC AGCAACAACA GCAGCAGCAG CAGTATCCGG GAgNCTACGC TGGCCAGGAT
0361 AGCTANCGGG GCGCCAGTCC CGGCATCATC ACCCTGCGCA AGGAGGCTCC AGTCAGCCAG
0421 AAGCCTGCAC CAGTCTACAC TTCGCAGCCA GCCGCCGTCA GTTATCAGGG AGGCAGCAAA
0481 TTGCGCGGAG ATTTGAAATG GC |
in silico PCR Fragment |
0001 TCCGTCTTAC GATGGCCAGC AGCCTGGAGC ACAGTGGCAA CAGCAACAGC AGCAGCAGCA
0061 GGTTCCGCAG CAGCAGTATC AGCCTCAATC GCAGGCTCAG GCGCCCTATC AGCCACCACA
0121 GTGGAACCAG CCGCAGCAGC AGCAGCAGCA GCCA-TCGTA CCAGGCTTCA CCGTACCAAC
0181 AGCAGCAACA GCAACAGCCA TCCTATTACC CACAGCAAAA TGGTGGCTCG ACC-TATGCT
0241 CAACCCCCAT ACAATTCTTA TTCGCAGCCC CAGTTGCCCT ACTCGCAGGA TCAGACTGAT
0301 CTGCAGCAGC AGCAACAACA GCAGCAGCAG CAGTATCCGG GAGCCTACGC TGGCCAGGAT
0361 AGCTACCGGG GCGCCAGTCC CGGCATCATC ACCCTGCGCA AGGAGGCTCC AGTCAGCCAG
0421 AAGCCTGCAC CAGTCTACAC TTCGCAGCCA GCCGCCGTCA GTTATCAGGG AGGCAGCAAA
0481 TTGCGCGGAG ATTTGAAATG GC |
Assemble Data |
32049R-1.IR_full 1 TCCGTCTTACGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCAGCAGCAGCA 60
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32049R-1.in silico 1 TCCGTCTTACGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCAGCAGCAGCA 60
32049R-1.IR_full 61 GGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGGCGCCCTATCAGCCACCACA 120
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32049R-1.in silico 61 GGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGGCGCCCTATCAGCCACCACA 120
32049R-1.IR_full 121 GTGNAACCAGCCGCAGCAGCAGCAGCAGCAGCCANTCGTACCAGGCTTCACCGTACCAAC 180
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32049R-1.in silico 121 GTGGAACCAGCCGCAGCAGCAGCAGCAGCAGCCA-TCGTACCAGGCTTCACCGTACCAAC 180
32049R-1.IR_full 181 AGCAGCAACAGCAACAGCCATCCTATTACCCACAGCAAAATGGTGGCTCGACCNTATGCT 240
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32049R-1.in silico 181 AGCAGCAACAGCAACAGCCATCCTATTACCCACAGCAAAATGGTGGCTCGACC-TATGCT 240
32049R-1.IR_full 241 CAACCCCCATACAATTCTTATTCGCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGAT 300
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32049R-1.in silico 241 CAACCCCCATACAATTCTTATTCGCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGAT 300
32049R-1.IR_full 301 CTGCAGCAGCAGCAACAACAGCAGCAGCAGCAGTATCCGGGAGNCTACGCTGGCCAGGAT 360
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32049R-1.in silico 301 CTGCAGCAGCAGCAACAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGGCCAGGAT 360
32049R-1.IR_full 361 AGCTANCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGGAGGCTCCAGTCAGCCAG 420
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32049R-1.in silico 361 AGCTACCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCAAGGAGGCTCCAGTCAGCCAG 420
32049R-1.IR_full 421 AAGCCTGCACCAGTCTACACTTCGCAGCCAGCCGCCGTCAGTTATCAGGGAGGCAGCAAA 480
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32049R-1.in silico 421 AAGCCTGCACCAGTCTACACTTCGCAGCCAGCCGCCGTCAGTTATCAGGGAGGCAGCAAA 480
32049R-1.IR_full 481 TTGCGCGGAGATTTGAAATGGC 502
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32049R-1.in silico 481 TTGCGCGGAGATTTGAAATGGC 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100.2 |
483 |
50 |
258 |
517 |
NM_176309.2 |
CG33205-RC, transcript variant C (CG33205), mRNA |
100.2 |
483 |
50 |
258 |
517 |
NM_176308.2 |
CG33205-RB, transcript variant B (CG33205), mRNA |
100.2 |
483 |
50 |
258 |
517 |
NM_176312.2 |
CG33205-RA, transcript variant A (CG33205), mRNA |
100 |
482 |
26 |
154 |
308 |
NM_001038908.1 |
CG33205-RH, transcript variant H (CG33205), mRNA |
100 |
482 |
26 |
154 |
305 |
NM_176311.2 |
CG33205-RG, transcript variant G (CG33205), mRNA |
100 |
482 |
26 |
154 |
305 |
NM_176310.2 |
CG33205-RF, transcript variant F (CG33205), mRNA |
100 |
482 |
26 |
154 |
305 |
NM_176313.2 |
CG33205-RE, transcript variant E (CG33205), mRNA |
45.64 |
220 |
9 |
62 |
106 |
NM_001038909.1 |
CG33205-RI, transcript variant I (CG33205), mRNA |
26.76 |
129 |
961 |
2780 |
4797 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
26.76 |
129 |
961 |
2780 |
4797 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
26.76 |
129 |
961 |
2780 |
4797 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
11.41 |
55 |
354 |
1119 |
2336 |
NM_080376.1 |
CG8118-RA, transcript variant A (mam), mRNA |
11.41 |
55 |
354 |
1119 |
2336 |
NM_166030.1 |
CG8118-RB, transcript variant B (mam), mRNA |
8.92 |
43 |
222 |
745 |
1796 |
NM_135077.2 |
CG14023-RA (CG14023), mRNA |
8.5 |
41 |
162 |
548 |
1089 |
NM_169259.1 |
CG9755-RD, transcript variant D (pum), mRNA |
8.5 |
41 |
162 |
548 |
1089 |
NM_079561.2 |
CG9755-RC, transcript variant C (pum), mRNA |
8.5 |
41 |
162 |
548 |
1089 |
NM_169258.1 |
CG9755-RA, transcript variant A (pum), mRNA |
8.5 |
41 |
137 |
515 |
1073 |
NM_137690.2 |
CG10543-RA, transcript variant A (CG10543), mRNA |
8.5 |
41 |
96 |
397 |
768 |
NM_166992.2 |
CG2904-RA (ec), mRNA |
8.09 |
39 |
171 |
661 |
1146 |
NM_132246.2 |
CG10555-RA (CG10555), mRNA |
8.09 |
39 |
122 |
441 |
927 |
NM_166416.1 |
CG10543-RB, transcript variant B (CG10543), mRNA |
8.09 |
39 |
122 |
440 |
922 |
NM_176241.1 |
CG10543-RC, transcript variant C (CG10543), mRNA |
7.46 |
36 |
113 |
439 |
1131 |
NM_168179.1 |
CG32394-RA (CG32394), mRNA |
7.05 |
34 |
256 |
703 |
1499 |
NM_131975.3 |
CG32767-RA, transcript variant A (CG32767), mRNA |
7.05 |
34 |
256 |
703 |
1499 |
NM_206628.1 |
CG32767-RB, transcript variant B (CG32767), mRNA |
7.05 |
34 |
254 |
828 |
1821 |
NM_168571.2 |
CG32133-RA (CG32133), mRNA |
6.84 |
33 |
261 |
683 |
1597 |
NM_139493.2 |
CG2083-RA (CG2083), mRNA |
6.84 |
33 |
158 |
499 |
1119 |
NM_140402.2 |
CG17689-RA, transcript variant A (CG17689), mRNA |
6.84 |
33 |
93 |
327 |
430 |
NM_167054.1 |
CG12236-RA, transcript variant A (CG12236), mRNA |
6.84 |
33 |
93 |
327 |
429 |
NM_132049.3 |
CG12236-RB, transcript variant B (CG12236), mRNA |
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