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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
31990R-2 |
| Symbol |
CG17768 |
Full Name |
CG17768 |
| CG No |
CG17768 |
Old CG No |
CG31990 |
| Synonyms |
CG31990, BcDNA:RE35747, CG5356, CG17768 |
| Accession No (Link to NCBI) |
NM_001032065.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121
[
PubMed ID = 31034473
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624
[
PubMed ID = 21666802
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAGCACAGAGCCATCCCATGTT |
| Primer Seq. 3' |
aatctagaggtaccTATTTTTGGCGGCGTGGGGCA |
| Predicted Fragment Size |
431 |
| IR fragment full Seq |
0001 AGCCNGNGAC AGAGCCATCC CATGTTGGTG GAGCTGAAAA ATGGTGAAAC ATACAATGGT
0061 CACCTGGTTA GTTGCGACTC GTGGATGAAT ATTAATCTGC GCGATGTTAT TTGCACCTCA
0121 AAGGATGGCG ATCGGTTTTG GCGCATGCCC GAATGTTATA TCCGCGGGAG CACCATCAAA
0181 TATCTGCGAA TCCCCGACGA AGTAATCGAC ATGGTCAAGG AGGACGCGCA GGCCAAGTCA
0241 AGGAATCGCA CAGAGATGAA CAAAAACCGC GGCGGCAACT CGTCGCAAAA TCAGCGCGGC
0301 GGACGTCCTG GTgGCGGCAA CCGCAACAAT GTCGGCAATC GTCCCGGCCA GGGATACGGA
0361 GGTGCTGCTA ACAACGCGaN GCGCCTGGGT gGNGCTGCTG GCCAAGGGAA CCGTCTGCCC
0421 CACGCCGCCA AAAATA |
| in silico PCR Fragment |
0001 AGC-----AC AGAGCCATCC CATGTTGGTG GAGCTGAAAA ATGGTGAAAC ATACAATGGT
0061 CACCTGGTTA GTTGCGACTC GTGGATGAAT ATTAATCTGC GCGATGTTAT TTGCACCTCA
0121 AAGGATGGCG ATCGGTTTTG GCGCATGCCC GAATGTTATA TCCGCGGGAG CACCATCAAA
0181 TATCTGCGAA TCCCCGACGA AGTAATCGAC ATGGTCAAGG AGGACGCGCA GGCCAAGTCA
0241 AGGAATCGCA CAGAGATGAA CAAAAACCGC GGCGGCAACT CGTCGCAAAA TCAGCGCGGC
0301 GGACGTCCTG GTGGCGGCAA CCGCAACAAT GTCGGCAATC GTCCCGGCCA GGGATACGGA
0361 GGTGCTGCTA ACAACGCGAT GCGCCTGGGT GGCGCTGCTG GCCAAGGGAA CCGTCTGCCC
0421 CACGCCGCCA AAAATA |
| Assemble Data |
31990R-2.IR_full 1 AGCCNGNGACAGAGCCATCCCATGTTGGTGGAGCTGAAAAATGGTGAAACATACAATGGT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
31990R-2.in silico 1 AGC-----ACAGAGCCATCCCATGTTGGTGGAGCTGAAAAATGGTGAAACATACAATGGT 60
31990R-2.IR_full 61 CACCTGGTTAGTTGCGACTCGTGGATGAATATTAATCTGCGCGATGTTATTTGCACCTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31990R-2.in silico 61 CACCTGGTTAGTTGCGACTCGTGGATGAATATTAATCTGCGCGATGTTATTTGCACCTCA 120
31990R-2.IR_full 121 AAGGATGGCGATCGGTTTTGGCGCATGCCCGAATGTTATATCCGCGGGAGCACCATCAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31990R-2.in silico 121 AAGGATGGCGATCGGTTTTGGCGCATGCCCGAATGTTATATCCGCGGGAGCACCATCAAA 180
31990R-2.IR_full 181 TATCTGCGAATCCCCGACGAAGTAATCGACATGGTCAAGGAGGACGCGCAGGCCAAGTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31990R-2.in silico 181 TATCTGCGAATCCCCGACGAAGTAATCGACATGGTCAAGGAGGACGCGCAGGCCAAGTCA 240
31990R-2.IR_full 241 AGGAATCGCACAGAGATGAACAAAAACCGCGGCGGCAACTCGTCGCAAAATCAGCGCGGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31990R-2.in silico 241 AGGAATCGCACAGAGATGAACAAAAACCGCGGCGGCAACTCGTCGCAAAATCAGCGCGGC 300
31990R-2.IR_full 301 GGACGTCCTGGTGGCGGCAACCGCAACAATGTCGGCAATCGTCCCGGCCAGGGATACGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31990R-2.in silico 301 GGACGTCCTGGTGGCGGCAACCGCAACAATGTCGGCAATCGTCCCGGCCAGGGATACGGA 360
31990R-2.IR_full 361 GGTGCTGCTAACAACGCGANGCGCCTGGGTGGNGCTGCTGGCCAAGGGAACCGTCTGCCC 420
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
31990R-2.in silico 361 GGTGCTGCTAACAACGCGATGCGCCTGGGTGGCGCTGCTGGCCAAGGGAACCGTCTGCCC 420
31990R-2.IR_full 421 CACGCCGCCAAAAATA 436
||||||||||||||||
31990R-2.in silico 421 CACGCCGCCAAAAATA 436
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
413 |
0 |
0 |
0 |
NM_001032065.1 |
CG17768-RA, transcript variant A (CG17768), mRNA |
| 100 |
413 |
0 |
0 |
0 |
NM_001032066.1 |
CG33677-RB, transcript variant B (CG33677), mRNA |
| 0 |
0 |
3 |
2 |
2 |
NM_132126.1 |
CG3075-RA (CG3075), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_130646.2 |
CG14045-RA (CG14045), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_140023.2 |
CG5093-RA (Doc3), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_138106.1 |
CG3640-RA (CG3640), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_169459.1 |
CG11502-RC, transcript variant C (svp), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_079601.2 |
CG11502-RB, transcript variant B (svp), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_001031933.1 |
CG33232-RD, transcript variant D (CG33232), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_136227.1 |
CG9338-RA (CG9338), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_206581.1 |
CG2304-RC, transcript variant C (Trc8), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_170413.2 |
CG2304-RA, transcript variant A (Trc8), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_170414.1 |
CG2304-RB, transcript variant B (Trc8), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_206580.1 |
CG2304-RD, transcript variant D (Trc8), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_001014630.1 |
CG33547-RA (Rim), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_143656.1 |
CG1674-RB, transcript variant B (CG1674), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_166746.1 |
CG1674-RC, transcript variant C (CG1674), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_205866.1 |
CG1674-RD, transcript variant D (CG1674), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_132056.3 |
CG4790-RA (fs(1)M3), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_166747.1 |
CG1674-RA, transcript variant A (CG1674), mRNA |
| 0 |
0 |
0 |
7 |
2 |
NM_166696.1 |
CG9071-RB, transcript variant B (NaCP60E), mRNA |
| 0 |
0 |
0 |
6 |
4 |
NM_137288.2 |
CG4439-RA (CG4439), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_170373.1 |
CG9983-RD, transcript variant D (Hrb98DE), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_170372.1 |
CG9983-RC, transcript variant C (Hrb98DE), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_170374.1 |
CG9983-RF, transcript variant F (Hrb98DE), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_079819.2 |
CG9983-RB, transcript variant B (Hrb98DE), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_170371.1 |
CG9983-RE, transcript variant E (Hrb98DE), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_170370.1 |
CG9983-RA, transcript variant A (Hrb98DE), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_170158.1 |
CG5794-RB, transcript variant B (CG5794), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_143018.2 |
CG5794-RD, transcript variant D (CG5794), mRNA |
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