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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
31916R-2 |
Symbol |
Msp-300 |
Full Name |
Muscle-specific protein 300 |
CG No |
CG33715 |
Old CG No |
CG31916 |
Synonyms |
FBgn0010070, MSP-300, CG18252, MSP300, jf22, CG31649, BcDNA:AT10293, BcDNA:GH18470, l(2)jf22, l(2)25Ch, Spec25CD, CG18251, BcDNA:LP10936, BcDNA:GH02446, CG31916, CG33549, CG33715, Msp-300, Muscle-specific protein 300, lethal(2)25Ch, nesprin, Nesprin, repetitive ORF, msp-300 |
Accession No (Link to NCBI) |
NM_001032052.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Cho Y, Lai CM, Lin KY, Hsu HJ. A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development. G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCAAGTCTACGATGCGACCGCT |
Primer Seq. 3' |
aatctagaggtaccCGCTCGCTTTCGATGAACTGG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CAAGTCTACG ATGCGACCgC TCGAAAGTCC TATGCGCTGG ATCCCCATTC AGTGGTGACC
0061 ACTTCATCGA CTGTCTCGTT GCTTATGAAG CCAACGGCGG CAGTAGGTCT AACCTATGCT
0121 GAAGTGCTGT CGGGACAAGC GAGTCCGGTA AGCAGCGGTA ATGAATCGGT AACCAATTCC
0181 CGACCAGAAC GAGACCCCTC CACGACGACA ACAACAACGA CAACACGGCA GCAACAATCG
0241 AACGATACTC AGAACACGAC CACTATTACA ACCATTAAGA CTACCACAAC TACGACAACG
0301 ACTTCGAGAA GTACGCACGG CGATGATGAT CAAAGCCAGG AGAGACAAGA GCTCAATGGC
0361 GGTGGCAGCA CCACAGCCAC AGCAAACTAT AAGCGCCCCC AACAGGTCAT ACCACCCAGC
0421 GAGAATACCT CAAACACGGT TCCTAACACA GCTACGACAA CGATAACCAA TCCCAATATC
0481 CAGTTCATCG AAATGCGAGC G |
in silico PCR Fragment |
0001 CAAGTCTACG ATGCGACCGC TCGAAAGTCC TATGCGCTGG ATCCCCATTC AGTGGTGACC
0061 ACTTCATCGA CTGTCTCGTT GCTTATGAAG CCAACGGCGG CAGTAGGTCT AACCTATGCT
0121 GAAGTGCTGT CGGGACAAGC GAGTCCGGTA AGCAGCGGTA ATGAATCGGT AACCAATTCC
0181 CGACCAGAAC GAGACCCCTC CACGACGACA ACAACAACGA CAACACGGCA GCAACAATCG
0241 AACGATACTC AGAACACGAC CACTATTACA ACCATTAAGA CTACCACAAC TACGACAACG
0301 ACTTCGAGAA GTACGCACGG CGATGATGAT CAAAGCCAGG AGAGACAAGA GCTCAATGGC
0361 GGTGGCAGCA CCACAGCCAC AGCAAACTAT AAGCGCCCCC AACAGGTCAC ACCACCCAGC
0421 GAGAATACCT CAAACACGGT TCCTAACACA GCTACGACAA CGATAACCAA TCCCAATATC
0481 CAGTTCATCG AAA-GCGAGC G |
Assemble Data |
31916R-2.IR_full 1 CAAGTCTACGATGCGACCGCTCGAAAGTCCTATGCGCTGGATCCCCATTCAGTGGTGACC 60
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31916R-2.in silico 1 CAAGTCTACGATGCGACCGCTCGAAAGTCCTATGCGCTGGATCCCCATTCAGTGGTGACC 60
31916R-2.IR_full 61 ACTTCATCGACTGTCTCGTTGCTTATGAAGCCAACGGCGGCAGTAGGTCTAACCTATGCT 120
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31916R-2.in silico 61 ACTTCATCGACTGTCTCGTTGCTTATGAAGCCAACGGCGGCAGTAGGTCTAACCTATGCT 120
31916R-2.IR_full 121 GAAGTGCTGTCGGGACAAGCGAGTCCGGTAAGCAGCGGTAATGAATCGGTAACCAATTCC 180
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31916R-2.in silico 121 GAAGTGCTGTCGGGACAAGCGAGTCCGGTAAGCAGCGGTAATGAATCGGTAACCAATTCC 180
31916R-2.IR_full 181 CGACCAGAACGAGACCCCTCCACGACGACAACAACAACGACAACACGGCAGCAACAATCG 240
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31916R-2.in silico 181 CGACCAGAACGAGACCCCTCCACGACGACAACAACAACGACAACACGGCAGCAACAATCG 240
31916R-2.IR_full 241 AACGATACTCAGAACACGACCACTATTACAACCATTAAGACTACCACAACTACGACAACG 300
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31916R-2.in silico 241 AACGATACTCAGAACACGACCACTATTACAACCATTAAGACTACCACAACTACGACAACG 300
31916R-2.IR_full 301 ACTTCGAGAAGTACGCACGGCGATGATGATCAAAGCCAGGAGAGACAAGAGCTCAATGGC 360
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31916R-2.in silico 301 ACTTCGAGAAGTACGCACGGCGATGATGATCAAAGCCAGGAGAGACAAGAGCTCAATGGC 360
31916R-2.IR_full 361 GGTGGCAGCACCACAGCCACAGCAAACTATAAGCGCCCCCAACAGGTCATACCACCCAGC 420
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31916R-2.in silico 361 GGTGGCAGCACCACAGCCACAGCAAACTATAAGCGCCCCCAACAGGTCACACCACCCAGC 420
31916R-2.IR_full 421 GAGAATACCTCAAACACGGTTCCTAACACAGCTACGACAACGATAACCAATCCCAATATC 480
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31916R-2.in silico 421 GAGAATACCTCAAACACGGTTCCTAACACAGCTACGACAACGATAACCAATCCCAATATC 480
31916R-2.IR_full 481 CAGTTCATCGAAATGCGAGCG 501
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31916R-2.in silico 481 CAGTTCATCGAAA-GCGAGCG 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
13 |
137 |
NM_001032052.1 |
CG33715-RE, transcript variant E (Msp-300), mRNA |
0.41 |
2 |
4 |
9 |
47 |
NM_166242.1 |
CG10936-RB, transcript variant B (CG10936), mRNA |
0.41 |
2 |
4 |
9 |
47 |
NM_137395.1 |
CG10936-RA, transcript variant A (CG10936), mRNA |
0.2 |
1 |
6 |
9 |
26 |
NM_080110.2 |
CG32356-RA, transcript variant A (ImpE1), mRNA |
0.2 |
1 |
5 |
36 |
91 |
NM_136854.1 |
CG13194-RA (pyr), mRNA |
0.2 |
1 |
2 |
2 |
9 |
NM_167392.1 |
CG32614-RA (CG32614), mRNA |
0 |
0 |
6 |
16 |
39 |
NM_001014642.1 |
CG33518-RA (mun), mRNA |
0 |
0 |
6 |
4 |
21 |
NM_130571.1 |
CG14796-RA (CG14796), mRNA |
0 |
0 |
6 |
4 |
12 |
NM_141132.1 |
CG14460-RA (CG14460), mRNA |
0 |
0 |
5 |
10 |
24 |
NM_165676.1 |
CG11804-RB, transcript variant B (ced-6), mRNA |
0 |
0 |
4 |
11 |
30 |
NM_132967.1 |
CG5004-RA (CG5004), mRNA |
0 |
0 |
4 |
8 |
20 |
NM_136344.1 |
CG14470-RA (CG14470), mRNA |
0 |
0 |
4 |
5 |
25 |
NM_168343.1 |
CG3743-RB, transcript variant B (MTF-1), mRNA |
0 |
0 |
4 |
5 |
25 |
NM_140054.2 |
CG3743-RA, transcript variant A (MTF-1), mRNA |
0 |
0 |
4 |
2 |
13 |
NM_141594.1 |
CG11970-RA (CG11970), mRNA |
0 |
0 |
3 |
34 |
98 |
NM_142162.2 |
CG6912-RA (CG6912), mRNA |
0 |
0 |
3 |
18 |
46 |
NM_079001.2 |
CG3886-RA (Psc), mRNA |
0 |
0 |
3 |
12 |
18 |
NM_168218.1 |
CG32372-RA (CG32372), mRNA |
0 |
0 |
3 |
9 |
21 |
NM_142210.1 |
CG6118-RA (CG6118), mRNA |
0 |
0 |
3 |
5 |
16 |
NM_166153.1 |
CG8448-RB, transcript variant B (mrj), mRNA |
0 |
0 |
3 |
3 |
13 |
NM_139656.1 |
CG13720-RA (CG13720), mRNA |
0 |
0 |
3 |
2 |
15 |
NM_079055.2 |
CG4943-RA (lack), mRNA |
0 |
0 |
2 |
18 |
21 |
NM_144273.1 |
CG15036-RA (CG15036), mRNA |
0 |
0 |
2 |
8 |
21 |
NM_132577.1 |
CG2556-RA (CG2556), mRNA |
0 |
0 |
2 |
7 |
18 |
NM_079300.2 |
CG11720-RA (Sgs3), mRNA |
0 |
0 |
2 |
6 |
35 |
NM_057811.3 |
CG3373-RA (Hmu), mRNA |
0 |
0 |
2 |
6 |
25 |
NM_166840.1 |
CG3777-RA, transcript variant A (CG3777), mRNA |
0 |
0 |
2 |
6 |
25 |
NM_166841.1 |
CG3777-RC, transcript variant C (CG3777), mRNA |
0 |
0 |
2 |
6 |
25 |
NM_130483.2 |
CG3777-RB, transcript variant B (CG3777), mRNA |
0 |
0 |
2 |
6 |
19 |
NM_143087.1 |
CG13652-RA (CG13652), mRNA |
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