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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
discarded
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
31811R-2 |
| Symbol |
cenG1A |
Full Name |
centaurin gamma 1A |
| CG No |
CG31811 |
Old CG No |
CG31811 |
| Synonyms |
ceng1A, unnamed, BG:DS08220.1, CG7982, CG16867, CG16866, CG31811, cenG1A |
| Accession No (Link to NCBI) |
NM_078838.2 |
| Inserted Chr. |
X |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
pupal lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Matsumoto Y, Shimizu K, Arahata K, Suzuki M, Shimizu A, Takei K, Yamauchi J, Hakeda-Suzuki S, Suzuki T, Morimoto T.
Prepulse inhibition in Drosophila melanogaster larvae.
Biol Open (2018) 7(9)
[
PubMed ID = 30262549
]
[
RRC reference
]
Homma M, Nagashima S, Fukuda T, Yanagi S, Miyakawa H, Suzuki E, Morimoto T.
Downregulation of Centaurin gamma1A increases synaptic transmission at Drosophila larval neuromuscular junctions.
Eur J Neurosci (2014) 40(8) 3158-70
[
PubMed ID = 25074496
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCCTGAGGGTCAAGAGGGCCAA |
| Primer Seq. 3' |
aatctagaggtaccCGCTGGCCAATTTCCTGGCAC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CCTGAGGGTC AAGAGGGCCA AGAGTCTGGT GGTGCCCGAT CGCAGCGAGA AACGTAAATC
0061 AGATTCGTTT GTGAACAGTC AGGAATGGAC AATTTCTCGT TCGGTGCCAG ATCTGAGGCT
0121 GGGAATCGTC GGTTCCCTGA ACTCCGGCAA GTCAGCCCTG GTGCATCGCT ATCTCACCGG
0181 ATCCTACATG CAGGAGGAGT CGCCCGAAGG TGGTCGGTTC AAAAAGGAGG TCTTCATCGA
0241 TGGCCAGAGC TACTTGCTGC TCATTCGCGA CGAGGGTGGA GCTCCCGAAA TGCAGTTCGC
0301 TGGCTGGGTG GATGCGGTAA TCTTTGTGTT CAGCCTGGAG AACGAGGGCA GCTTCAATAC
0361 CGTCTATAAC TACTATACGA AAATGGCGCA TTTTCGTAAT GGCCAGGAAA TACCCATGAT
0421 ATTGGTCGGA ACGCAAGACG CCATCAGcGA GCGCAATCCT CGCGTGATTG ACGACACCCG
0481 TGCCAGGAAA NTGGCCAGCG |
| in silico PCR Fragment |
0001 CCTGAGGGTC AAGAGGGCCA AGAGTCTGGT GGTGCCCGAT CGCAGCGAGA AACGTAAATC
0061 AGATTCGTTT GTGAACAGTC AGGAATGGAC AATTTCTCGT TCGGTGCCAG ATCTGAGGCT
0121 GGGAATCGTC GGTTCCCTGA ACTCCGGCAA GTCAGCCCTG GTGCATCGCT ATCTCACCGG
0181 ATCCTACATG CAGGAGGAGT CGCCCGAAGG TGGTCGGTTC AAAAAGGAGG TCTTCATCGA
0241 TGGCCAGAGC TACTTGCTGC TCATTCGCGA CGAGGGTGGA GCTCCCGAAA TGCAGTTCGC
0301 TGGCTGGGTG GATGCGGTAA TCTTTGTGTT CAGCCTGGAG AACGAGGGCA GCTTCAATAC
0361 CGTCTATAAC TACTATACGA AAATGGCGCA TTTTCGTAAT GGCCAGGAAA TACCCATGAT
0421 ATTGGTCGGA ACGCAAGACG CCATCAGCGA GCGCAATCCT CGCGTGATTG ACGACACCCG
0481 TGCCAGGAAA TTGGCCAGCG |
| Assemble Data |
31811R-2.IR_full 1 CCTGAGGGTCAAGAGGGCCAAGAGTCTGGTGGTGCCCGATCGCAGCGAGAAACGTAAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31811R-2.in silico 1 CCTGAGGGTCAAGAGGGCCAAGAGTCTGGTGGTGCCCGATCGCAGCGAGAAACGTAAATC 60
31811R-2.IR_full 61 AGATTCGTTTGTGAACAGTCAGGAATGGACAATTTCTCGTTCGGTGCCAGATCTGAGGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31811R-2.in silico 61 AGATTCGTTTGTGAACAGTCAGGAATGGACAATTTCTCGTTCGGTGCCAGATCTGAGGCT 120
31811R-2.IR_full 121 GGGAATCGTCGGTTCCCTGAACTCCGGCAAGTCAGCCCTGGTGCATCGCTATCTCACCGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31811R-2.in silico 121 GGGAATCGTCGGTTCCCTGAACTCCGGCAAGTCAGCCCTGGTGCATCGCTATCTCACCGG 180
31811R-2.IR_full 181 ATCCTACATGCAGGAGGAGTCGCCCGAAGGTGGTCGGTTCAAAAAGGAGGTCTTCATCGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31811R-2.in silico 181 ATCCTACATGCAGGAGGAGTCGCCCGAAGGTGGTCGGTTCAAAAAGGAGGTCTTCATCGA 240
31811R-2.IR_full 241 TGGCCAGAGCTACTTGCTGCTCATTCGCGACGAGGGTGGAGCTCCCGAAATGCAGTTCGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31811R-2.in silico 241 TGGCCAGAGCTACTTGCTGCTCATTCGCGACGAGGGTGGAGCTCCCGAAATGCAGTTCGC 300
31811R-2.IR_full 301 TGGCTGGGTGGATGCGGTAATCTTTGTGTTCAGCCTGGAGAACGAGGGCAGCTTCAATAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31811R-2.in silico 301 TGGCTGGGTGGATGCGGTAATCTTTGTGTTCAGCCTGGAGAACGAGGGCAGCTTCAATAC 360
31811R-2.IR_full 361 CGTCTATAACTACTATACGAAAATGGCGCATTTTCGTAATGGCCAGGAAATACCCATGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31811R-2.in silico 361 CGTCTATAACTACTATACGAAAATGGCGCATTTTCGTAATGGCCAGGAAATACCCATGAT 420
31811R-2.IR_full 421 ATTGGTCGGAACGCAAGACGCCATCAGCGAGCGCAATCCTCGCGTGATTGACGACACCCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31811R-2.in silico 421 ATTGGTCGGAACGCAAGACGCCATCAGCGAGCGCAATCCTCGCGTGATTGACGACACCCG 480
31811R-2.IR_full 481 TGCCAGGAAANTGGCCAGCG 500
|||||||||| |||||||||
31811R-2.in silico 481 TGCCAGGAAATTGGCCAGCG 500
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
5 |
NM_078838.2 |
CG31811-RA, transcript variant A (cenG1A), mRNA |
| 87.55 |
422 |
1 |
1 |
6 |
NM_165067.1 |
CG31811-RB, transcript variant B (cenG1A), mRNA |
| 39.41 |
190 |
2 |
1 |
6 |
NM_165068.1 |
CG31811-RC, transcript variant C (cenG1A), mRNA |
| 0 |
0 |
2 |
4 |
4 |
NM_143496.3 |
CG15523-RA (CG15523), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_164485.1 |
CG9885-RB, transcript variant B (dpp), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_167355.1 |
CG32639-RA (CG32639), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_164836.1 |
CG12437-RA, transcript variant A (raw), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_058041.2 |
CG12467-RA (CG12467), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_206529.1 |
CG3671-RC, transcript variant C (Mvl), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_079701.4 |
CG3671-RA, transcript variant A (Mvl), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_169944.1 |
CG3671-RB, transcript variant B (Mvl), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_140867.1 |
CG9279-RA, transcript variant A (CG9279), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_168801.1 |
CG9279-RB, transcript variant B (CG9279), mRNA |
| 0 |
0 |
1 |
1 |
4 |
NM_136533.1 |
CG11641-RA (pdm3), mRNA |
| 0 |
0 |
0 |
8 |
6 |
NM_206437.1 |
CG17603-RC, transcript variant C (Taf1), mRNA |
| 0 |
0 |
0 |
8 |
6 |
NM_206438.1 |
CG17603-RB, transcript variant B (Taf1), mRNA |
| 0 |
0 |
0 |
8 |
6 |
NM_057608.4 |
CG17603-RA, transcript variant A (Taf1), mRNA |
| 0 |
0 |
0 |
6 |
5 |
NR_002692.1 |
CR33963, miscRNA |
| 0 |
0 |
0 |
6 |
4 |
NM_139816.1 |
CG8641-RA (CG8641), mRNA |
| 0 |
0 |
0 |
4 |
7 |
NM_139839.3 |
CG32381-RA (unc-13-4A), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_143397.2 |
CG1442-RA (eIF4E-6), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_140288.2 |
CG6801-RA (l(3)j2D3), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_133073.2 |
CG6394-RA, transcript variant A (GalNAc-T2), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_167623.1 |
CG6394-RB, transcript variant B (GalNAc-T2), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_176499.1 |
CG33101-RA (Nsf2), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
| 0 |
0 |
0 |
4 |
3 |
NM_135371.3 |
CG7627-RA (CG7627), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_140353.1 |
CG14120-RA (CG14120), mRNA |
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