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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3127R-3 
 Symbol Pgk  Full Name Phosphoglycerate kinase 
 CG No CG3127  Old CG No CG3127 
 Synonyms pgk, 169C9S, PGK, anon-sts18, ESTS:169C9S, CG3127, Pgk 
 Accession No (Link to NCBI) NM_057328.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees pupal lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G.
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network.
Dev Cell (2010) 18(5) 862-76 [ PubMed ID = 20493818 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCATCAAGGAGGGCAAGATCAC 
 Primer Seq. 3'
aatctagaggtaccACTTCAGCTCCTTGTTCAGCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CATCAAGGAG GGCAAGATCA CCAGCAACCA GAGAATTGTC GCTGCCTTGG ATAGTATCAA 
0061 GTTGGCCCTT TCCAAGAAAG CCAAGTCGGT GGTGCTGATG TCCCACTTGG GTCGTCCCGA 
0121 TGGCAACAAG AACATCAAGT ACACCCTGGC ACCCGTGGCC GCTGAGCTGA AGACCCTGCT 
0181 TGGCCAGGAT GTGATCTTCC TAAGTGACTG CGTCGGCAGC GAAGTGGAGG CCGCTTGCAA 
0241 GGATCCCGCA CCGGGATCCG TCATTCTGCT GGAGAACGTC CGCTTCTACG TGGAGGAGGA 
0301 GGGCAAGGGC TTGGATGCCA GCGGCGGCAA GGTCAAGGCC GATCCTGCCA AGGTCAAGGA 
0361 GTTCCGTGCC AGCCTGGCCA AGCTGGGCGA NTGTCTATGT CAACGACGCC TTCGGCACTG 
0421 CCCATCGCGC CCACAGTTCC ATGATGGGCG ATGGCTTCGA GCAGCGNGCA GCTGGTCTGT 
0481 TGCTGAACaA GGAGCTGAAN GT 
 in silico PCR Fragment
0001 CATCAAGGAG GGCAAGATCA CCAGCAACCA GAGAATTGTC GCTGCCTTGG ATAGTATCAA 
0061 GTTGGCCCTT TCCAAGAAAG CCAAGTCGGT GGTGCTGATG TCCCACTTGG GTCGTCCCGA 
0121 TGGCAACAAG AACATCAAGT ACACCCTGGC ACCCGTGGCC GCTGAGCTGA AGACCCTGCT 
0181 TGGCCAGGAT GTGATCTTCC TAAGTGACTG CGTCGGCAGC GAAGTGGAGG CCGCTTGCAA 
0241 GGATCCCGCA CCGGGATCCG TCATTCTGCT GGAGAACGTC CGCTTCTACG TGGAGGAGGA 
0301 GGGCAAGGGC TTGGATGCCA GCGGCGGCAA GGTCAAGGCC GATCCTGCCA AGGTCAAGGA 
0361 GTTCCGTGCC AGCCTGGCCA AGCTGGGCGA -TGTCTATGT CAACGACGCC TTCGGCACTG 
0421 CCCATCGCGC CCACAGTTCC ATGATGGGCG ATGGCTTCGA GCAGCGCGCA GCTGGTCTGT 
0481 TGCTGAACAA GGAGCTGAA- GT 
 Assemble Data

3127R-3.IR_full       1   CATCAAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAGTATCAA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3127R-3.in silico     1   CATCAAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAGTATCAA 60


3127R-3.IR_full       61  GTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCCACTTGGGTCGTCCCGA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3127R-3.in silico     61  GTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCCACTTGGGTCGTCCCGA 120


3127R-3.IR_full       121 TGGCAACAAGAACATCAAGTACACCCTGGCACCCGTGGCCGCTGAGCTGAAGACCCTGCT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3127R-3.in silico     121 TGGCAACAAGAACATCAAGTACACCCTGGCACCCGTGGCCGCTGAGCTGAAGACCCTGCT 180


3127R-3.IR_full       181 TGGCCAGGATGTGATCTTCCTAAGTGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3127R-3.in silico     181 TGGCCAGGATGTGATCTTCCTAAGTGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAA 240


3127R-3.IR_full       241 GGATCCCGCACCGGGATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3127R-3.in silico     241 GGATCCCGCACCGGGATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGA 300


3127R-3.IR_full       301 GGGCAAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGTCAAGGA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3127R-3.in silico     301 GGGCAAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGTCAAGGA 360


3127R-3.IR_full       361 GTTCCGTGCCAGCCTGGCCAAGCTGGGCGANTGTCTATGTCAACGACGCCTTCGGCACTG 420
                          |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
3127R-3.in silico     361 GTTCCGTGCCAGCCTGGCCAAGCTGGGCGA-TGTCTATGTCAACGACGCCTTCGGCACTG 420


3127R-3.IR_full       421 CCCATCGCGCCCACAGTTCCATGATGGGCGATGGCTTCGAGCAGCGNGCAGCTGGTCTGT 480
                          |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
3127R-3.in silico     421 CCCATCGCGCCCACAGTTCCATGATGGGCGATGGCTTCGAGCAGCGCGCAGCTGGTCTGT 480


3127R-3.IR_full       481 TGCTGAACAAGGAGCTGAANGT 502
                          ||||||||||||||||||| ||
3127R-3.in silico     481 TGCTGAACAAGGAGCTGAA-GT 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_057328.3  CG3127-RA (Pgk), mRNA 
0.82   19  45  NM_134860.2  CG9961-RA (CG9961), mRNA 
0.2   NM_057512.3  CG3724-RA (Pgd), mRNA 
0   NM_132103.2  CG3973-RA (CG3973), mRNA 
0   NM_057686.3  CG4254-RA (tsr), mRNA 
0   NM_141428.1  CG1979-RA (CG1979), mRNA 
0   NM_137690.2  CG10543-RA, transcript variant A (CG10543), mRNA 
0   NM_132854.2  CG8578-RA (CG8578), mRNA 
0   13  NM_078722.2  CG17941-RA (ds), mRNA 
0   NM_169272.1  CG18473-RA (CG18473), mRNA 
0   NM_135302.3  CG7191-RA (CG7191), mRNA 
0   NM_136371.2  CG9403-RA, transcript variant A (jing), mRNA 
0   NM_206027.1  CG9403-RD, transcript variant D (jing), mRNA 
0   NM_206026.1  CG9403-RC, transcript variant C (jing), mRNA 
0   NM_143372.1  CG9995-RA (htt), mRNA 
0   NM_132831.1  CG8184-RB (CG8184), mRNA 
0   NM_168210.1  CG8582-RA, transcript variant A (Sh3beta), mRNA 
0   NM_139855.2  CG8582-RB, transcript variant B (Sh3beta), mRNA 
0   NM_143344.2  CG5520-RA (Gp93), mRNA 
0   NM_132508.2  CG1703-RA (CG1703), mRNA 
0   NM_144487.1  CG5518-RA (sda), mRNA 
0   NM_166292.1  CG30116-RA, transcript variant A (CG30116), mRNA 
0   NM_141212.3  CG9809-RA, transcript variant A (CG9809), mRNA 
0   NM_168997.3  CG9809-RC, transcript variant C (CG9809), mRNA 
0   NM_168996.3  CG9809-RB, transcript variant B (CG9809), mRNA 
0   NM_137493.2  CG30116-RC, transcript variant C (CG30116), mRNA 
0   NM_132072.1  CG14446-RA (CG14446), mRNA 
0   NM_166291.1  CG30116-RD, transcript variant D (CG30116), mRNA 
0   NM_137494.1  CG30116-RB, transcript variant B (CG30116), mRNA 
0   NM_170091.1  CG10217-RB, transcript variant B (CG10217), mRNA 

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