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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
3127R-3 |
Symbol |
Pgk |
Full Name |
Phosphoglycerate kinase |
CG No |
CG3127 |
Old CG No |
CG3127 |
Synonyms |
pgk, 169C9S, PGK, anon-sts18, ESTS:169C9S, CG3127, Pgk |
Accession No (Link to NCBI) |
NM_057328.3 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
pupal lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G. A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCATCAAGGAGGGCAAGATCAC |
Primer Seq. 3' |
aatctagaggtaccACTTCAGCTCCTTGTTCAGCA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CATCAAGGAG GGCAAGATCA CCAGCAACCA GAGAATTGTC GCTGCCTTGG ATAGTATCAA
0061 GTTGGCCCTT TCCAAGAAAG CCAAGTCGGT GGTGCTGATG TCCCACTTGG GTCGTCCCGA
0121 TGGCAACAAG AACATCAAGT ACACCCTGGC ACCCGTGGCC GCTGAGCTGA AGACCCTGCT
0181 TGGCCAGGAT GTGATCTTCC TAAGTGACTG CGTCGGCAGC GAAGTGGAGG CCGCTTGCAA
0241 GGATCCCGCA CCGGGATCCG TCATTCTGCT GGAGAACGTC CGCTTCTACG TGGAGGAGGA
0301 GGGCAAGGGC TTGGATGCCA GCGGCGGCAA GGTCAAGGCC GATCCTGCCA AGGTCAAGGA
0361 GTTCCGTGCC AGCCTGGCCA AGCTGGGCGA NTGTCTATGT CAACGACGCC TTCGGCACTG
0421 CCCATCGCGC CCACAGTTCC ATGATGGGCG ATGGCTTCGA GCAGCGNGCA GCTGGTCTGT
0481 TGCTGAACaA GGAGCTGAAN GT |
in silico PCR Fragment |
0001 CATCAAGGAG GGCAAGATCA CCAGCAACCA GAGAATTGTC GCTGCCTTGG ATAGTATCAA
0061 GTTGGCCCTT TCCAAGAAAG CCAAGTCGGT GGTGCTGATG TCCCACTTGG GTCGTCCCGA
0121 TGGCAACAAG AACATCAAGT ACACCCTGGC ACCCGTGGCC GCTGAGCTGA AGACCCTGCT
0181 TGGCCAGGAT GTGATCTTCC TAAGTGACTG CGTCGGCAGC GAAGTGGAGG CCGCTTGCAA
0241 GGATCCCGCA CCGGGATCCG TCATTCTGCT GGAGAACGTC CGCTTCTACG TGGAGGAGGA
0301 GGGCAAGGGC TTGGATGCCA GCGGCGGCAA GGTCAAGGCC GATCCTGCCA AGGTCAAGGA
0361 GTTCCGTGCC AGCCTGGCCA AGCTGGGCGA -TGTCTATGT CAACGACGCC TTCGGCACTG
0421 CCCATCGCGC CCACAGTTCC ATGATGGGCG ATGGCTTCGA GCAGCGCGCA GCTGGTCTGT
0481 TGCTGAACAA GGAGCTGAA- GT |
Assemble Data |
3127R-3.IR_full 1 CATCAAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAGTATCAA 60
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3127R-3.in silico 1 CATCAAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAGTATCAA 60
3127R-3.IR_full 61 GTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCCACTTGGGTCGTCCCGA 120
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3127R-3.in silico 61 GTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCCACTTGGGTCGTCCCGA 120
3127R-3.IR_full 121 TGGCAACAAGAACATCAAGTACACCCTGGCACCCGTGGCCGCTGAGCTGAAGACCCTGCT 180
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3127R-3.in silico 121 TGGCAACAAGAACATCAAGTACACCCTGGCACCCGTGGCCGCTGAGCTGAAGACCCTGCT 180
3127R-3.IR_full 181 TGGCCAGGATGTGATCTTCCTAAGTGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAA 240
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3127R-3.in silico 181 TGGCCAGGATGTGATCTTCCTAAGTGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAA 240
3127R-3.IR_full 241 GGATCCCGCACCGGGATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGA 300
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3127R-3.in silico 241 GGATCCCGCACCGGGATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGA 300
3127R-3.IR_full 301 GGGCAAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGTCAAGGA 360
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3127R-3.in silico 301 GGGCAAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGTCAAGGA 360
3127R-3.IR_full 361 GTTCCGTGCCAGCCTGGCCAAGCTGGGCGANTGTCTATGTCAACGACGCCTTCGGCACTG 420
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3127R-3.in silico 361 GTTCCGTGCCAGCCTGGCCAAGCTGGGCGA-TGTCTATGTCAACGACGCCTTCGGCACTG 420
3127R-3.IR_full 421 CCCATCGCGCCCACAGTTCCATGATGGGCGATGGCTTCGAGCAGCGNGCAGCTGGTCTGT 480
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3127R-3.in silico 421 CCCATCGCGCCCACAGTTCCATGATGGGCGATGGCTTCGAGCAGCGCGCAGCTGGTCTGT 480
3127R-3.IR_full 481 TGCTGAACAAGGAGCTGAANGT 502
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3127R-3.in silico 481 TGCTGAACAAGGAGCTGAA-GT 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
7 |
NM_057328.3 |
CG3127-RA (Pgk), mRNA |
0.82 |
4 |
5 |
19 |
45 |
NM_134860.2 |
CG9961-RA (CG9961), mRNA |
0.2 |
1 |
2 |
6 |
2 |
NM_057512.3 |
CG3724-RA (Pgd), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_132103.2 |
CG3973-RA (CG3973), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_057686.3 |
CG4254-RA (tsr), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_141428.1 |
CG1979-RA (CG1979), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_137690.2 |
CG10543-RA, transcript variant A (CG10543), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_132854.2 |
CG8578-RA (CG8578), mRNA |
0 |
0 |
2 |
2 |
13 |
NM_078722.2 |
CG17941-RA (ds), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_169272.1 |
CG18473-RA (CG18473), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_135302.3 |
CG7191-RA (CG7191), mRNA |
0 |
0 |
1 |
5 |
5 |
NM_136371.2 |
CG9403-RA, transcript variant A (jing), mRNA |
0 |
0 |
1 |
5 |
5 |
NM_206027.1 |
CG9403-RD, transcript variant D (jing), mRNA |
0 |
0 |
1 |
5 |
5 |
NM_206026.1 |
CG9403-RC, transcript variant C (jing), mRNA |
0 |
0 |
1 |
4 |
9 |
NM_143372.1 |
CG9995-RA (htt), mRNA |
0 |
0 |
1 |
4 |
9 |
NM_132831.1 |
CG8184-RB (CG8184), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_168210.1 |
CG8582-RA, transcript variant A (Sh3beta), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_139855.2 |
CG8582-RB, transcript variant B (Sh3beta), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_143344.2 |
CG5520-RA (Gp93), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_132508.2 |
CG1703-RA (CG1703), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_144487.1 |
CG5518-RA (sda), mRNA |
0 |
0 |
1 |
2 |
9 |
NM_166292.1 |
CG30116-RA, transcript variant A (CG30116), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_141212.3 |
CG9809-RA, transcript variant A (CG9809), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_168997.3 |
CG9809-RC, transcript variant C (CG9809), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_168996.3 |
CG9809-RB, transcript variant B (CG9809), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_137493.2 |
CG30116-RC, transcript variant C (CG30116), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_132072.1 |
CG14446-RA (CG14446), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_166291.1 |
CG30116-RD, transcript variant D (CG30116), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_137494.1 |
CG30116-RB, transcript variant B (CG30116), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_170091.1 |
CG10217-RB, transcript variant B (CG10217), mRNA |
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