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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 31141R-1 
 Symbol CG31141  Full Name CG31141 
 CG No CG31141  Old CG No CG31141 
 Synonyms CG31141 
 Accession No (Link to NCBI) NM_170095.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGATGCTCCTGCCCGGATACT 
 Primer Seq. 3'
aatctagaggtaccTGATGGTCGCGGAGCAGCTGA 
 Predicted Fragment Size
495 
 IR fragment full Seq
0001 TGATGCTCCT GCCCGGATAC TACTTCATGT TGGTATTCCA ACCGTACAAC TTTCGCTGCA 
0061 TGACTGTCCT GCAGCAGGAT CATCCGCTGA AGAACTGGGA GCGCTGCATC AGcTATGCTT 
0121 ACTACATAAA CAAGATCGTT GACCTGCTTG ACACCGTGTT CTGCGTGCTG CgCAAGAAGT 
0181 ACTCCGCAAA TAACGTTTTT GCACGTTTTC CACCACGTCC TGATGCCATA CCGCCGGATA 
0241 CTTGATAATA CGATTCTATG GCTACGGAGG TCAACTCTTC TTCCTGTGCT CCTTCAATGT 
0301 ATTCGTTCAT ATCTTCATGT ATGCCTATTA CTATTCGGCC ATCAAGGGCA ATACGGTGCG 
0361 TTGGAAGCGG TACTTGACCC TCATGCAAAT GCTGCAGTTC CTCCTCATGT TTGGCCATTG 
0421 CGCCTTAACC GCCATGCAGC GGCAGTGCAC TGCATCGCAG GGAACCCTCT TTCTGGTCAG 
0481 CTGCTCCGCG ACCAATCA 
 in silico PCR Fragment
0001 TGATGCTCCT GCCCGGATAC TACTTCATGT TGGTATTCCA ACCGTACAAC TTTCGCTGCA 
0061 TGACTGTCCT GCAGCAGGAT CATCCGCTGA AGAACTGGGA GCGCTGCATC AGCTATGCTT 
0121 ACTACATAAA CAAGATCGTT GACCTGCTTG ACACCGTGTT CTGCGTGCTG CGCAAGAAGT 
0181 ACT-CGCAAA TAACGTTTTT GCACGTTTTC CACCACGTCC TGATGCCAT- CCGCCGGATA 
0241 CTTGATAATA CGATTCTATG GCTACGGAGG TCAACTCTTC TTCCTGTGCT CCTTCAATGT 
0301 ATTCGTTCAT ATCTTCATGT ATGCCTATTA CTATTCGGCC ATCAAGGGCA ATACGGTGCG 
0361 TTGGAAGCGG TACTTGACCC TCATGCAAAT GCTGCAGTTC CTCCTCATGT TTGGCCATTG 
0421 CGCCTTAACC GCCATGCAGC GGCAGTGCAC TGCATCGCAG GGAACCCTCT TTCTGGTCAG 
0481 CTGCTCCGCG ACC-ATCA 
 Assemble Data

31141R-1.IR_full       1   TGATGCTCCTGCCCGGATACTACTTCATGTTGGTATTCCAACCGTACAACTTTCGCTGCA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31141R-1.in silico     1   TGATGCTCCTGCCCGGATACTACTTCATGTTGGTATTCCAACCGTACAACTTTCGCTGCA 60


31141R-1.IR_full       61  TGACTGTCCTGCAGCAGGATCATCCGCTGAAGAACTGGGAGCGCTGCATCAGCTATGCTT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31141R-1.in silico     61  TGACTGTCCTGCAGCAGGATCATCCGCTGAAGAACTGGGAGCGCTGCATCAGCTATGCTT 120


31141R-1.IR_full       121 ACTACATAAACAAGATCGTTGACCTGCTTGACACCGTGTTCTGCGTGCTGCGCAAGAAGT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31141R-1.in silico     121 ACTACATAAACAAGATCGTTGACCTGCTTGACACCGTGTTCTGCGTGCTGCGCAAGAAGT 180


31141R-1.IR_full       181 ACTCCGCAAATAACGTTTTTGCACGTTTTCCACCACGTCCTGATGCCATACCGCCGGATA 240
                           ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
31141R-1.in silico     181 ACT-CGCAAATAACGTTTTTGCACGTTTTCCACCACGTCCTGATGCCAT-CCGCCGGATA 240


31141R-1.IR_full       241 CTTGATAATACGATTCTATGGCTACGGAGGTCAACTCTTCTTCCTGTGCTCCTTCAATGT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31141R-1.in silico     241 CTTGATAATACGATTCTATGGCTACGGAGGTCAACTCTTCTTCCTGTGCTCCTTCAATGT 300


31141R-1.IR_full       301 ATTCGTTCATATCTTCATGTATGCCTATTACTATTCGGCCATCAAGGGCAATACGGTGCG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31141R-1.in silico     301 ATTCGTTCATATCTTCATGTATGCCTATTACTATTCGGCCATCAAGGGCAATACGGTGCG 360


31141R-1.IR_full       361 TTGGAAGCGGTACTTGACCCTCATGCAAATGCTGCAGTTCCTCCTCATGTTTGGCCATTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31141R-1.in silico     361 TTGGAAGCGGTACTTGACCCTCATGCAAATGCTGCAGTTCCTCCTCATGTTTGGCCATTG 420


31141R-1.IR_full       421 CGCCTTAACCGCCATGCAGCGGCAGTGCACTGCATCGCAGGGAACCCTCTTTCTGGTCAG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31141R-1.in silico     421 CGCCTTAACCGCCATGCAGCGGCAGTGCACTGCATCGCAGGGAACCCTCTTTCTGGTCAG 480


31141R-1.IR_full       481 CTGCTCCGCGACCAATCA 498
                           ||||||||||||| ||||
31141R-1.in silico     481 CTGCTCCGCGACC-ATCA 498

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   477  NM_170095.1  CG31141-RA (CG31141), mRNA 
0.41   NM_079018.2  CG10119-RA (LamC), mRNA 
0.2   NM_134744.1  CG14342-RA (CG14342), mRNA 
0.2   13  NM_141701.2  CG9459-RA (CG9459), mRNA 
0   11  NM_142847.1  CG6660-RA (CG6660), mRNA 
0   NM_080315.2  CG10742-RA (Tsp3A), mRNA 
0   NM_135124.1  CG14001-RA (bchs), mRNA 
0   NM_078742.2  CG3289-RA (Ptpa), mRNA 
0   NM_135328.1  CG7219-RA (CG7219), mRNA 
0   NM_135153.2  CG9226-RA (CG9226), mRNA 
0   NM_001043123.1  CG32387-RC, transcript variant C (CG32387), mRNA 
0   NM_168195.1  CG32387-RB, transcript variant B (CG32387), mRNA 
0   NM_168196.1  CG32387-RA, transcript variant A (CG32387), mRNA 
0   NM_168275.1  CG32354-RA (CG32354), mRNA 
0   NM_131923.2  CG6121-RA (Tip60), mRNA 
0   20  NM_141700.1  CG16904-RA (CG16904), mRNA 
0   NM_164740.1  CG31907-RA (CG31907), mRNA 
0   NM_206424.1  CG7448-RB, transcript variant B (CG7448), mRNA 
0   NM_135415.2  CG31886-RA (CG31886), mRNA 
0   NM_141116.1  CG7448-RA, transcript variant A (CG7448), mRNA 
0   NM_167519.1  CG9968-RB, transcript variant B (Anxb11), mRNA 
0   NM_078646.2  CG9968-RA, transcript variant A (Anxb11), mRNA 
0   NM_206294.1  CG33275-RA, transcript variant A (CG33275), mRNA 
0   NM_206295.1  CG33275-RB, transcript variant B (CG33275), mRNA 
0   NM_206293.1  CG33275-RC, transcript variant C (CG33275), mRNA 
0   NM_139990.2  CG5971-RA (CG5971), mRNA 
0   NM_058124.2  CG5772-RA (Sur), mRNA 
0   NM_140927.2  CG6981-RA, transcript variant A (CG6981), mRNA 
0   NM_168831.1  CG6981-RB, transcript variant B (CG6981), mRNA 
0   NM_001031870.1  CG15892-RA, transcript variant A (CG15892), mRNA 

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