Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
3044R-3 |
Symbol |
CG3044 |
Full Name |
CG3044 |
CG No |
CG3044 |
Old CG No |
CG3044 |
Synonyms |
CG3044 |
Accession No (Link to NCBI) |
NM_132133.1 |
Inserted Chr. |
lll |
Insertional Mutation |
lethal |
Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD. Zyxin links fat signaling to the hippo pathway. PLoS Biol (2011) 9(6) e1000624
[
PubMed ID = 21666802
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCCTGCGAACTTTGGTCTGCTG |
Primer Seq. 3' |
aatctagaggtaccGCTGCGAGAGATGCATTCGCT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CCTGCGAACT TTGGTCTGCT GGAGTGCTTT GTTGTTCTCT TTGTTGTGCC TTTGCCTCGG
0061 GTTCATCGGC CTGGGATTAC TCGGCATCCA AACTGGGGAA GTGCACAAGG TGGGGCAGCG
0121 ATTGGTGTGC TACTACGCCA GCGATGGCAC CCACAATCTC AGCCTTTTGG ATGTTCCCGG
0181 CGATCTGTGC ACCCACATCA ATATCGGACC CGCCACTTTG GATAATGCCA CCATAGTCCT
0241 TCCCGATAcC CTCAGACAGG TACTACAGAA CGACACCCGA TCCTTTCGTG CTGCCCATCC
0301 GCAGGTTCAC CTGCTTCTCT GGATCGGTGG CGCCGACAGT GGGCGGTCAT TTGCCCTCAT
0361 GGTgGCGAAC CACgCCATGC GAAAGTTGTT CCTGCGctNC CTCCGGGAAA TATTGCGCAC
0421 CTATCCCAGT TTGGATGGCA TCGATCTCGA CTGGGAGTTT CCGAGTGCCT ACGATCGTGA
0481 GcGAATGCAT CTCTCGCAGC |
in silico PCR Fragment |
0001 CCTGCGAACT TTGGTCTGCT GGAGTGCTTT GTTGTTCTCT TTGTTGTGCC TTTGCCTCGG
0061 GTTCATCGGC CTGGGATTAC TCGGCATCCA AACTGGGGAA GTGCACAAGG TGGGGCAGCG
0121 GTTGGTGTGC TACTACGCAA GCGATGGCAC CCACAATCTC AGCCTTTTGG ATGTTCCCGG
0181 CGACCTGTGC ACCCACATCA ATATCGGACC CGCCACTTTG GATAATGCCA CCATAGTCCT
0241 TCCCGATACC CTCAGACAGG TACTACAGAA CGACACCCGA TCCTTTCGTG CTGCCCATCC
0301 GCAGGTTCAC CTGCTTCTCT GGATCGGTGG CGCCGACAGT GGGCGGTCAT TTGCCCTCAT
0361 GGTGGCGAAC CACGCCATGC GAAAGTTGTT CCTGCGCTCC CTCCGGGAAA TATTGCGCAC
0421 CTATCCCAGT TTGGATGGCA TCGATCTCGA CTGGGAGTTT CCGAGTGCCT ACGATCGTGA
0481 GCGAATGCAT CTCTCGCAGC |
Assemble Data |
3044R-3.IR_full 1 CCTGCGAACTTTGGTCTGCTGGAGTGCTTTGTTGTTCTCTTTGTTGTGCCTTTGCCTCGG 60
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3044R-3.in silico 1 CCTGCGAACTTTGGTCTGCTGGAGTGCTTTGTTGTTCTCTTTGTTGTGCCTTTGCCTCGG 60
3044R-3.IR_full 61 GTTCATCGGCCTGGGATTACTCGGCATCCAAACTGGGGAAGTGCACAAGGTGGGGCAGCG 120
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3044R-3.in silico 61 GTTCATCGGCCTGGGATTACTCGGCATCCAAACTGGGGAAGTGCACAAGGTGGGGCAGCG 120
3044R-3.IR_full 121 ATTGGTGTGCTACTACGCCAGCGATGGCACCCACAATCTCAGCCTTTTGGATGTTCCCGG 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
3044R-3.in silico 121 GTTGGTGTGCTACTACGCAAGCGATGGCACCCACAATCTCAGCCTTTTGGATGTTCCCGG 180
3044R-3.IR_full 181 CGATCTGTGCACCCACATCAATATCGGACCCGCCACTTTGGATAATGCCACCATAGTCCT 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3044R-3.in silico 181 CGACCTGTGCACCCACATCAATATCGGACCCGCCACTTTGGATAATGCCACCATAGTCCT 240
3044R-3.IR_full 241 TCCCGATACCCTCAGACAGGTACTACAGAACGACACCCGATCCTTTCGTGCTGCCCATCC 300
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3044R-3.in silico 241 TCCCGATACCCTCAGACAGGTACTACAGAACGACACCCGATCCTTTCGTGCTGCCCATCC 300
3044R-3.IR_full 301 GCAGGTTCACCTGCTTCTCTGGATCGGTGGCGCCGACAGTGGGCGGTCATTTGCCCTCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3044R-3.in silico 301 GCAGGTTCACCTGCTTCTCTGGATCGGTGGCGCCGACAGTGGGCGGTCATTTGCCCTCAT 360
3044R-3.IR_full 361 GGTGGCGAACCACGCCATGCGAAAGTTGTTCCTGCGCTNCCTCCGGGAAATATTGCGCAC 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
3044R-3.in silico 361 GGTGGCGAACCACGCCATGCGAAAGTTGTTCCTGCGCTCCCTCCGGGAAATATTGCGCAC 420
3044R-3.IR_full 421 CTATCCCAGTTTGGATGGCATCGATCTCGACTGGGAGTTTCCGAGTGCCTACGATCGTGA 480
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3044R-3.in silico 421 CTATCCCAGTTTGGATGGCATCGATCTCGACTGGGAGTTTCCGAGTGCCTACGATCGTGA 480
3044R-3.IR_full 481 GCGAATGCATCTCTCGCAGC 500
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3044R-3.in silico 481 GCGAATGCATCTCTCGCAGC 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
2 |
NM_132133.1 |
CG3044-RA (CG3044), mRNA |
0.41 |
2 |
6 |
8 |
11 |
NM_142057.2 |
CG9307-RA (CG9307), mRNA |
0.2 |
1 |
2 |
2 |
3 |
NM_079741.2 |
CG10210-RA (tst), mRNA |
0 |
0 |
4 |
12 |
4 |
NM_137477.2 |
CG5154-RA (Idgf5), mRNA |
0 |
0 |
3 |
4 |
11 |
NM_167080.1 |
CG32742-RA (l(1)G0148), mRNA |
0 |
0 |
3 |
2 |
5 |
NM_142495.1 |
CG14299-RA, transcript variant A (CG14299), mRNA |
0 |
0 |
3 |
2 |
5 |
NM_001014640.1 |
CG14299-RB, transcript variant B (CG14299), mRNA |
0 |
0 |
2 |
7 |
3 |
NM_168574.1 |
CG6603-RC, transcript variant C (Hsc70Cb), mRNA |
0 |
0 |
2 |
7 |
3 |
NM_168573.1 |
CG6603-RB, transcript variant B (Hsc70Cb), mRNA |
0 |
0 |
2 |
7 |
3 |
NM_140430.2 |
CG6603-RA, transcript variant A (Hsc70Cb), mRNA |
0 |
0 |
2 |
5 |
4 |
NM_057950.2 |
CG2054-RA (Cht2), mRNA |
0 |
0 |
1 |
5 |
5 |
NM_078956.2 |
CG12210-RA, transcript variant A (Syb), mRNA |
0 |
0 |
1 |
4 |
7 |
NM_079572.2 |
CG9484-RA (hyd), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_057754.2 |
CG9484-RA (hyd), mRNA, type I CG4099-RA (Sr-CI), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_168038.1 |
CG32264-RD, transcript variant D (CG32264), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_137871.2 |
CG3536-RA (CG3536), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_166551.2 |
CG30267-RA (CG30267), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_143318.2 |
CG31057-RA (tau), mRNA |
0 |
0 |
0 |
18 |
20 |
NM_205954.2 |
CG33300-RA (CG33300), mRNA |
0 |
0 |
0 |
8 |
55 |
NM_175960.3 |
CG33196-RB (dp), mRNA |
0 |
0 |
0 |
7 |
11 |
NM_167207.1 |
CG1780-RB, transcript variant B (Idgf4), mRNA |
0 |
0 |
0 |
7 |
11 |
NM_078546.2 |
CG1780-RA, transcript variant A (Idgf4), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_143058.1 |
CG13645-RA, transcript variant A (Nmnat), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_170185.1 |
CG13645-RB, transcript variant B (Nmnat), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_165411.1 |
CG6448-RA, transcript variant A (CG6448), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_136290.2 |
CG6448-RB, transcript variant B (CG6448), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_135451.1 |
CG3818-RA (CG3818), mRNA |
0 |
0 |
0 |
4 |
8 |
NM_167325.1 |
CG11138-RB, transcript variant B (CG11138), mRNA |
0 |
0 |
0 |
4 |
8 |
NM_132581.1 |
CG11138-RC, transcript variant C (CG11138), mRNA |
0 |
0 |
0 |
4 |
8 |
NM_135028.2 |
CG15625-RA (CG15625), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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VB |
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