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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
30408R-2 |
Symbol |
CG34370 |
Full Name |
- |
CG No |
CG34370 |
Old CG No |
CG30408 |
Synonyms |
FBgn0085399, CG13499, CG34004, BP1037, unnamed, CG33227, CG34370, tld-like, CT32866, CG13498, CG13497, CG30408, CG30405 |
Accession No (Link to NCBI) |
NM_206199.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCGGTTTCCGCATCAATCGAAT |
Primer Seq. 3' |
aatctagaggtaccACCGAGTGCACGCGTTACTAT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CANTTTCCGC ATCAATCGAA TAGAATCACC GATTTTGAAG TACGAAGGAG ACTGCGGAGA
0061 ATCCCTGACG ATCTACGATT CCGACCATGC CGATCCAGCA CGGATTATCA AGACCTTCTG
0121 CGACACATTC TCGAGGCCAA TGGAAAAGGT GGACTTCGTC ANGCACCAGC CCCTCACTGT
0181 ACGTGCAGTT TGACTCGAAG ACGGGCAGCT ATAGCGGCAG CTCACTGTAC TACTGGGCGC
0241 ACTACGATTT CTTCAACAAT ACTCGTTTTG GTGACCCAGT GCCAAACACC CTATGCGACG
0301 AGGTGATGTA TGCTTGGAAG CATCCAGGTG GACGTCTTCG ATCGCCTTTG AATTCACTGA
0361 TTTTCAAGCG AACCGGCGGA AGCGATGTGC GCTGTCAATA CAAATTTGTT ACCGATCGAA
0421 GACTCTATGC CCGAGCCATA ATCGAAGTGA ATTCTGTTTC CTTCAAGGNA CTTCCGTATA
0481 ATAGTAACGC gTGCATCTCG GT |
in silico PCR Fragment |
0001 CAGTTTCCGC ATCAATCGAA TAGAATCACC GATTTTGAAG TACGAAGGAG ACTGCGGAGA
0061 ATCCCTGACG ATCTACGATT CCGACCATGC CGATCCAGCA CGGATTATCA AGACCTTCTG
0121 CGACACATTC TCGCGACCAA TGGAGAAGGT GGACTTCGTG A-GCACCAGT CCCTCACTGT
0181 ACGTGCAGTT CGACTCGAAG ACGGGCAGCT ATAGCGGCAG CTCACTGTAC TACTGGGCGC
0241 ACTACGATTT CTTCAACAAT ACTCGTTTTG GTGACCCAGT GCCAAATACC CTATGTGACG
0301 AGGTGATGTA TGCCTGGAAG CATCCAGGTG GACGTCTTCG ATCGCCCTTG AATTCACTGA
0361 TTTTCAAGCG AACCGGCGGA AGCGATGTGC GCTGTCAATA CAAATTTGTT ACCGATCGAA
0421 GACTCTATGC CCGAGCCATA ATCGAAGTGA ATTCTGTTTC CTTCAAGGAA CTTCCGTATA
0481 ATAGTAACGC GTGCA-CTCG GT |
Assemble Data |
30408R-2.IR_full 1 CANTTTCCGCATCAATCGAATAGAATCACCGATTTTGAAGTACGAAGGAGACTGCGGAGA 60
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30408R-2.in silico 1 CAGTTTCCGCATCAATCGAATAGAATCACCGATTTTGAAGTACGAAGGAGACTGCGGAGA 60
30408R-2.IR_full 61 ATCCCTGACGATCTACGATTCCGACCATGCCGATCCAGCACGGATTATCAAGACCTTCTG 120
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30408R-2.in silico 61 ATCCCTGACGATCTACGATTCCGACCATGCCGATCCAGCACGGATTATCAAGACCTTCTG 120
30408R-2.IR_full 121 CGACACATTCTCGAGGCCAATGGAAAAGGTGGACTTCGTCANGCACCAGCCCCTCACTGT 180
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30408R-2.in silico 121 CGACACATTCTCGCGACCAATGGAGAAGGTGGACTTCGTGA-GCACCAGTCCCTCACTGT 180
30408R-2.IR_full 181 ACGTGCAGTTTGACTCGAAGACGGGCAGCTATAGCGGCAGCTCACTGTACTACTGGGCGC 240
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30408R-2.in silico 181 ACGTGCAGTTCGACTCGAAGACGGGCAGCTATAGCGGCAGCTCACTGTACTACTGGGCGC 240
30408R-2.IR_full 241 ACTACGATTTCTTCAACAATACTCGTTTTGGTGACCCAGTGCCAAACACCCTATGCGACG 300
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30408R-2.in silico 241 ACTACGATTTCTTCAACAATACTCGTTTTGGTGACCCAGTGCCAAATACCCTATGTGACG 300
30408R-2.IR_full 301 AGGTGATGTATGCTTGGAAGCATCCAGGTGGACGTCTTCGATCGCCTTTGAATTCACTGA 360
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30408R-2.in silico 301 AGGTGATGTATGCCTGGAAGCATCCAGGTGGACGTCTTCGATCGCCCTTGAATTCACTGA 360
30408R-2.IR_full 361 TTTTCAAGCGAACCGGCGGAAGCGATGTGCGCTGTCAATACAAATTTGTTACCGATCGAA 420
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30408R-2.in silico 361 TTTTCAAGCGAACCGGCGGAAGCGATGTGCGCTGTCAATACAAATTTGTTACCGATCGAA 420
30408R-2.IR_full 421 GACTCTATGCCCGAGCCATAATCGAAGTGAATTCTGTTTCCTTCAAGGNACTTCCGTATA 480
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30408R-2.in silico 421 GACTCTATGCCCGAGCCATAATCGAAGTGAATTCTGTTTCCTTCAAGGAACTTCCGTATA 480
30408R-2.IR_full 481 ATAGTAACGCGTGCATCTCGGT 502
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30408R-2.in silico 481 ATAGTAACGCGTGCA-CTCGGT 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_206199.1 |
CG33227-RB (CG33227), mRNA |
0 |
0 |
5 |
2 |
4 |
NM_136859.2 |
CG8991-RA (Sobp), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_135418.1 |
CG18088-RA (CG18088), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_078638.2 |
CG9908-RA, transcript variant A (disco), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_001038758.1 |
CG9908-RB, transcript variant B (disco), mRNA |
0 |
0 |
2 |
1 |
2 |
NM_142215.2 |
CG5205-RA (CG5205), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_057988.3 |
CG6620-RA (ial), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_139743.2 |
CG10483-RA (CG10483), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_165760.2 |
CG18408-RB, transcript variant B (CAP), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_132302.3 |
CG7055-RA (dalao), mRNA |
0 |
0 |
0 |
9 |
12 |
NM_168226.1 |
CG32377-RA (CG32377), mRNA |
0 |
0 |
0 |
5 |
8 |
NM_143722.2 |
CG4913-RA (ear), mRNA |
0 |
0 |
0 |
4 |
12 |
NM_167293.1 |
CG2371-RA, transcript variant A (CG2371), mRNA |
0 |
0 |
0 |
4 |
12 |
NM_132510.2 |
CG2371-RB, transcript variant B (CG2371), mRNA |
0 |
0 |
0 |
4 |
12 |
NM_167294.1 |
CG2371-RC, transcript variant C (CG2371), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_170529.2 |
CG12070-RB, transcript variant B (Sap-r), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_079858.3 |
CG12070-RA, transcript variant A (Sap-r), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_164887.1 |
CG31714-RA (CG31714), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_176348.1 |
CG18135-RD, transcript variant D (CG18135), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_140825.2 |
CG18135-RA, transcript variant A (CG18135), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_176346.1 |
CG18135-RB, transcript variant B (CG18135), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_176347.1 |
CG18135-RC, transcript variant C (CG18135), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043061.1 |
CG17800-PAD (Dscam), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043012.1 |
CG17800-PAC (Dscam), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043050.1 |
CG17800-PAB (Dscam), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043036.1 |
CG17800-PAA (Dscam), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043016.1 |
CG17800-PBG (Dscam), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043052.1 |
CG17800-RZ, transcript variant Z (Dscam), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043026.1 |
CG17800-RY, transcript variant Y (Dscam), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043030.1 |
CG17800-RX, transcript variant X (Dscam), mRNA |
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