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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 30408R-2 
 Symbol CG34370  Full Name
 CG No CG34370  Old CG No CG30408 
 Synonyms FBgn0085399, CG13499, CG34004, BP1037, unnamed, CG33227, CG34370, tld-like, CT32866, CG13498, CG13497, CG30408, CG30405 
 Accession No (Link to NCBI) NM_206199.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGGTTTCCGCATCAATCGAAT 
 Primer Seq. 3'
aatctagaggtaccACCGAGTGCACGCGTTACTAT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CANTTTCCGC ATCAATCGAA TAGAATCACC GATTTTGAAG TACGAAGGAG ACTGCGGAGA 
0061 ATCCCTGACG ATCTACGATT CCGACCATGC CGATCCAGCA CGGATTATCA AGACCTTCTG 
0121 CGACACATTC TCGAGGCCAA TGGAAAAGGT GGACTTCGTC ANGCACCAGC CCCTCACTGT 
0181 ACGTGCAGTT TGACTCGAAG ACGGGCAGCT ATAGCGGCAG CTCACTGTAC TACTGGGCGC 
0241 ACTACGATTT CTTCAACAAT ACTCGTTTTG GTGACCCAGT GCCAAACACC CTATGCGACG 
0301 AGGTGATGTA TGCTTGGAAG CATCCAGGTG GACGTCTTCG ATCGCCTTTG AATTCACTGA 
0361 TTTTCAAGCG AACCGGCGGA AGCGATGTGC GCTGTCAATA CAAATTTGTT ACCGATCGAA 
0421 GACTCTATGC CCGAGCCATA ATCGAAGTGA ATTCTGTTTC CTTCAAGGNA CTTCCGTATA 
0481 ATAGTAACGC gTGCATCTCG GT 
 in silico PCR Fragment
0001 CAGTTTCCGC ATCAATCGAA TAGAATCACC GATTTTGAAG TACGAAGGAG ACTGCGGAGA 
0061 ATCCCTGACG ATCTACGATT CCGACCATGC CGATCCAGCA CGGATTATCA AGACCTTCTG 
0121 CGACACATTC TCGCGACCAA TGGAGAAGGT GGACTTCGTG A-GCACCAGT CCCTCACTGT 
0181 ACGTGCAGTT CGACTCGAAG ACGGGCAGCT ATAGCGGCAG CTCACTGTAC TACTGGGCGC 
0241 ACTACGATTT CTTCAACAAT ACTCGTTTTG GTGACCCAGT GCCAAATACC CTATGTGACG 
0301 AGGTGATGTA TGCCTGGAAG CATCCAGGTG GACGTCTTCG ATCGCCCTTG AATTCACTGA 
0361 TTTTCAAGCG AACCGGCGGA AGCGATGTGC GCTGTCAATA CAAATTTGTT ACCGATCGAA 
0421 GACTCTATGC CCGAGCCATA ATCGAAGTGA ATTCTGTTTC CTTCAAGGAA CTTCCGTATA 
0481 ATAGTAACGC GTGCA-CTCG GT 
 Assemble Data

30408R-2.IR_full       1   CANTTTCCGCATCAATCGAATAGAATCACCGATTTTGAAGTACGAAGGAGACTGCGGAGA 60
                           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30408R-2.in silico     1   CAGTTTCCGCATCAATCGAATAGAATCACCGATTTTGAAGTACGAAGGAGACTGCGGAGA 60


30408R-2.IR_full       61  ATCCCTGACGATCTACGATTCCGACCATGCCGATCCAGCACGGATTATCAAGACCTTCTG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30408R-2.in silico     61  ATCCCTGACGATCTACGATTCCGACCATGCCGATCCAGCACGGATTATCAAGACCTTCTG 120


30408R-2.IR_full       121 CGACACATTCTCGAGGCCAATGGAAAAGGTGGACTTCGTCANGCACCAGCCCCTCACTGT 180
                           ||||||||||||| | |||||||| |||||||||||||| | ||||||| ||||||||||
30408R-2.in silico     121 CGACACATTCTCGCGACCAATGGAGAAGGTGGACTTCGTGA-GCACCAGTCCCTCACTGT 180


30408R-2.IR_full       181 ACGTGCAGTTTGACTCGAAGACGGGCAGCTATAGCGGCAGCTCACTGTACTACTGGGCGC 240
                           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
30408R-2.in silico     181 ACGTGCAGTTCGACTCGAAGACGGGCAGCTATAGCGGCAGCTCACTGTACTACTGGGCGC 240


30408R-2.IR_full       241 ACTACGATTTCTTCAACAATACTCGTTTTGGTGACCCAGTGCCAAACACCCTATGCGACG 300
                           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
30408R-2.in silico     241 ACTACGATTTCTTCAACAATACTCGTTTTGGTGACCCAGTGCCAAATACCCTATGTGACG 300


30408R-2.IR_full       301 AGGTGATGTATGCTTGGAAGCATCCAGGTGGACGTCTTCGATCGCCTTTGAATTCACTGA 360
                           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
30408R-2.in silico     301 AGGTGATGTATGCCTGGAAGCATCCAGGTGGACGTCTTCGATCGCCCTTGAATTCACTGA 360


30408R-2.IR_full       361 TTTTCAAGCGAACCGGCGGAAGCGATGTGCGCTGTCAATACAAATTTGTTACCGATCGAA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30408R-2.in silico     361 TTTTCAAGCGAACCGGCGGAAGCGATGTGCGCTGTCAATACAAATTTGTTACCGATCGAA 420


30408R-2.IR_full       421 GACTCTATGCCCGAGCCATAATCGAAGTGAATTCTGTTTCCTTCAAGGNACTTCCGTATA 480
                           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
30408R-2.in silico     421 GACTCTATGCCCGAGCCATAATCGAAGTGAATTCTGTTTCCTTCAAGGAACTTCCGTATA 480


30408R-2.IR_full       481 ATAGTAACGCGTGCATCTCGGT 502
                           ||||||||||||||| ||||||
30408R-2.in silico     481 ATAGTAACGCGTGCA-CTCGGT 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_206199.1  CG33227-RB (CG33227), mRNA 
0   NM_136859.2  CG8991-RA (Sobp), mRNA 
0   NM_135418.1  CG18088-RA (CG18088), mRNA 
0   NM_078638.2  CG9908-RA, transcript variant A (disco), mRNA 
0   NM_001038758.1  CG9908-RB, transcript variant B (disco), mRNA 
0   NM_142215.2  CG5205-RA (CG5205), mRNA 
0   NM_057988.3  CG6620-RA (ial), mRNA 
0   NM_139743.2  CG10483-RA (CG10483), mRNA 
0   NM_165760.2  CG18408-RB, transcript variant B (CAP), mRNA 
0   NM_132302.3  CG7055-RA (dalao), mRNA 
0   12  NM_168226.1  CG32377-RA (CG32377), mRNA 
0   NM_143722.2  CG4913-RA (ear), mRNA 
0   12  NM_167293.1  CG2371-RA, transcript variant A (CG2371), mRNA 
0   12  NM_132510.2  CG2371-RB, transcript variant B (CG2371), mRNA 
0   12  NM_167294.1  CG2371-RC, transcript variant C (CG2371), mRNA 
0   NM_170529.2  CG12070-RB, transcript variant B (Sap-r), mRNA 
0   NM_079858.3  CG12070-RA, transcript variant A (Sap-r), mRNA 
0   NM_164887.1  CG31714-RA (CG31714), mRNA 
0   NM_176348.1  CG18135-RD, transcript variant D (CG18135), mRNA 
0   NM_140825.2  CG18135-RA, transcript variant A (CG18135), mRNA 
0   NM_176346.1  CG18135-RB, transcript variant B (CG18135), mRNA 
0   NM_176347.1  CG18135-RC, transcript variant C (CG18135), mRNA 
0   NM_001043061.1  CG17800-PAD (Dscam), mRNA 
0   NM_001043012.1  CG17800-PAC (Dscam), mRNA 
0   NM_001043050.1  CG17800-PAB (Dscam), mRNA 
0   NM_001043036.1  CG17800-PAA (Dscam), mRNA 
0   NM_001043016.1  CG17800-PBG (Dscam), mRNA 
0   NM_001043052.1  CG17800-RZ, transcript variant Z (Dscam), mRNA 
0   NM_001043026.1  CG17800-RY, transcript variant Y (Dscam), mRNA 
0   NM_001043030.1  CG17800-RX, transcript variant X (Dscam), mRNA 

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