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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 30156R-3 
 Symbol CG30156  Full Name CG30156 
 CG No CG30156  Old CG No CG30156 
 Synonyms BcDNA:AT02529, BEST:GH05253, CG30156 
 Accession No (Link to NCBI) NM_165500.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAAGGTGGTGAGTGACCTGTGC 
 Primer Seq. 3'
aatctagaggtaccCTTTCCCCGCGATAATCCTTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AAGGTGGTGA GTGACCTGTG CCTGGGACAC TACGAGCACG CTCTGAGGCA GATCAACGAG 
0061 GATCTGGAAG GCTTACAGAA CCACGATGAG ATCATGGCGC TGCTGGAGCT AAAGAATATC 
0121 ATTTTGAGAC TGAGGCTGAA GGGCGAGGCC CAGCGGACCA TAGGCCCAAC TCGCAAATCT 
0181 GACGCCCTGC CCCACAAGTT CACACTCGAG ATGCTGGACG TGGTGCAGAA GGTCCTGCGG 
0241 TGCCGCAATC ACTACGAGGT GCTGCGCATC TCTCATCATG CCACCTACTC CGAGGTGAAN 
0301 GCGGGCCTAC CACAAGCTGG CCCTGCGCCT CCATCCGGAC AAGAACAAAT CTCCTGGGGC 
0361 TGAGCAGGCC TTCCGGCGGA TCAGCGAGGC GGCTGACTGC CTCACGGACT GCCAGAAAAG 
0421 GATTGAGTAC AACATAGCAA CGGCAGTGGG CGACTGCCAC GACCAGGATC CCTCGCAGTA 
0481 CAAGGATTAT CGCGGGGAAA G 
 in silico PCR Fragment
0001 AAGGTGGTGA GTGACCTGTG CCTGGGACAC TACGAGCACG CTCTGAGGCA GATCAACGAG 
0061 GATCTGGAAG GCTTACAGAA CCACGATGAG ATCATGGCGC TGCTGGAGCT AAAGAATATC 
0121 ATTTTGAGAC TGAGGCTGAA GGGCGAGGCC CAGCGGACCA TAGGCCCAAC TCGCAAATCT 
0181 GACGCCCTGC CCCACAAGTT CACACTCGAG ATGCTGGACG TGGTGCAGAA GGTCCTGCGG 
0241 TGCCGCAATC ACTACGAGGT GCTGCGCATC TCTCATCATG CCACCTACTC CGAGGTGAA- 
0301 GCGGGCCTAC CACAAGCTGG CCCTGCGCCT CCATCCGGAC AAGAACAAAT CTCCTGGGGC 
0361 TGAGCAGGCC TTCCGGCGGA TCAGCGAGGC GGCTGACTGC CTCACGGACT GCCAGAAAAG 
0421 GATTGAGTAC AACATAGCAA CGGCAGTGGG CGACTGCCAC GACCAGGATC CCTCGCAGTA 
0481 CAAGGATTAT CGCGGGGAAA G 
 Assemble Data

30156R-3.IR_full       1   AAGGTGGTGAGTGACCTGTGCCTGGGACACTACGAGCACGCTCTGAGGCAGATCAACGAG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30156R-3.in silico     1   AAGGTGGTGAGTGACCTGTGCCTGGGACACTACGAGCACGCTCTGAGGCAGATCAACGAG 60


30156R-3.IR_full       61  GATCTGGAAGGCTTACAGAACCACGATGAGATCATGGCGCTGCTGGAGCTAAAGAATATC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30156R-3.in silico     61  GATCTGGAAGGCTTACAGAACCACGATGAGATCATGGCGCTGCTGGAGCTAAAGAATATC 120


30156R-3.IR_full       121 ATTTTGAGACTGAGGCTGAAGGGCGAGGCCCAGCGGACCATAGGCCCAACTCGCAAATCT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30156R-3.in silico     121 ATTTTGAGACTGAGGCTGAAGGGCGAGGCCCAGCGGACCATAGGCCCAACTCGCAAATCT 180


30156R-3.IR_full       181 GACGCCCTGCCCCACAAGTTCACACTCGAGATGCTGGACGTGGTGCAGAAGGTCCTGCGG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30156R-3.in silico     181 GACGCCCTGCCCCACAAGTTCACACTCGAGATGCTGGACGTGGTGCAGAAGGTCCTGCGG 240


30156R-3.IR_full       241 TGCCGCAATCACTACGAGGTGCTGCGCATCTCTCATCATGCCACCTACTCCGAGGTGAAN 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
30156R-3.in silico     241 TGCCGCAATCACTACGAGGTGCTGCGCATCTCTCATCATGCCACCTACTCCGAGGTGAA- 300


30156R-3.IR_full       301 GCGGGCCTACCACAAGCTGGCCCTGCGCCTCCATCCGGACAAGAACAAATCTCCTGGGGC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30156R-3.in silico     301 GCGGGCCTACCACAAGCTGGCCCTGCGCCTCCATCCGGACAAGAACAAATCTCCTGGGGC 360


30156R-3.IR_full       361 TGAGCAGGCCTTCCGGCGGATCAGCGAGGCGGCTGACTGCCTCACGGACTGCCAGAAAAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30156R-3.in silico     361 TGAGCAGGCCTTCCGGCGGATCAGCGAGGCGGCTGACTGCCTCACGGACTGCCAGAAAAG 420


30156R-3.IR_full       421 GATTGAGTACAACATAGCAACGGCAGTGGGCGACTGCCACGACCAGGATCCCTCGCAGTA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30156R-3.in silico     421 GATTGAGTACAACATAGCAACGGCAGTGGGCGACTGCCACGACCAGGATCCCTCGCAGTA 480


30156R-3.IR_full       481 CAAGGATTATCGCGGGGAAAG 501
                           |||||||||||||||||||||
30156R-3.in silico     481 CAAGGATTATCGCGGGGAAAG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_165500.1  CG30156-RA (CG30156), mRNA 
0.41   NM_141017.2  CG12983-RA (CG12983), mRNA 
0.2   NM_140896.1  CG8334-RA (CG8334), mRNA 
0   NM_057678.3  CG31240-RA (repo), mRNA 
0   NM_079035.2  CG3666-RA (Tsf3), mRNA 
0   NM_170139.1  CG31132-RA (BRWD3), mRNA 
0   NM_080128.2  CG4539-RA (Bka), mRNA 
0   NM_169229.1  CG8007-RA, transcript variant A (CG8007), mRNA 
0   NM_141549.1  CG8007-RB, transcript variant B (CG8007), mRNA 
0   NM_165178.1  CG17332-RD, transcript variant D (VhaSFD), mRNA 
0   NM_165177.1  CG17332-RB, transcript variant B (VhaSFD), mRNA 
0   NM_078861.2  CG17332-RA, transcript variant A (VhaSFD), mRNA 
0   NM_144349.2  CG12132-RA (c11.1), mRNA 
0   NM_169807.2  CG7672-RB, transcript variant B (gl), mRNA 
0   NM_057506.2  CG7672-RA, transcript variant A (gl), mRNA 
0   NM_130685.1  CG14420-RA (CG14420), mRNA 
0   NM_138161.1  CG13875-RA (CG13875), mRNA 
0   NM_142828.1  CG13842-RA (CG13842), mRNA 
0   NM_137792.1  CG6437-RA (GlcT-1), mRNA 
0   NM_139949.2  CG7185-RA (CG7185), mRNA 
0   NM_135360.3  CG7830-RA (CG7830), mRNA 
0   NM_078691.2  CG12532-RA (Bap), mRNA 
0   NM_133126.1  CG7556-RA (CG7556), mRNA 
0   NM_168278.1  CG32352-RB, transcript variant B (CG32352), mRNA 
0   NM_168279.2  CG32352-RA, transcript variant A (CG32352), mRNA 
0   NM_170629.2  CG32352-RC, transcript variant C (CG32352), mRNA 
0   NM_141123.1  CG7130-RA (CG7130), mRNA 
0   NM_142456.1  CG15803-RA (CG15803), mRNA 
0   NM_130628.2  CG3621-RA (CG3621), mRNA 
0   NM_168353.1  CG32048-RB, transcript variant B (CG32048), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
+- 
DC
+- 
DM
+- 
VM
+- 
VB
 
Caspase-3 signal
N
 
DB
DC
DM
+  
VM
VB
 
Dcompartment   Penetrance
   

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