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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 30072R-2 
 Symbol Obp50c  Full Name Odorant-binding protein 50c 
 CG No CG30072  Old CG No CG30072 
 Synonyms CG30072, Obp50c 
 Accession No (Link to NCBI) NM_166052.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCATATAGCCCTGCTGATCTG 
 Primer Seq. 3'
aatctagaggtaccGCAATCGGGCCATTTCGCAAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GCATATAGCC CTGCTGATCT GCTCATTGCT AGCGATGGCT GGCTGTGATC CAATCGATGT 
0061 GGACTGTACT CGCAGACAGG ATTTCAATAT TGTCAAGGAC TGCTGTGCCT ATCCCACATT 
0121 TAGGTTTGAC CAGTTCAAAA GCCAGTGTGG TAAATATATG CCAGTTGGTG CTCCCAGAAT 
0181 TTCACCCTGC CTCTATGAAT GCATTTTCAA TAAGACCAAC ACAGTTGTGG ACGGAGCTAT 
0241 TCATCCTGAC AATGCCCGAC TCATGCTGGA GAAGCTTTTC GGTAATCAGG ACTTTGAAGA 
0301 AGCCTATTTC AATGGTTTAA TGGGCTGTTC GGATTCTGTG CAAGAGATGA TTAGCAACAG 
0361 GAGGTCACGG CCCCAAAGAA AAACAGAACA ATGCTCTCCA TTCTCACTTT TCTATGGAAT 
0421 TTGTGCCCAG AGATATGTCT TCAACCATTG TCCATCATCC AGCTGGTCCG GCACTGAATC 
0481 TTGCGAAATG GCCCGANTGN  
 in silico PCR Fragment
0001 GCATATAGCC CTGCTGATCT GCTCATTGCT AGCGATGGCT GGCTGTGATC CAATCGATGT 
0061 GGACTGTACT CGCAGACAGG ATTTCAATAT TGTCAAGGAC TGCTGTGTCT ATCCCACATT 
0121 TAGGTTTGAC CAGTTCAAAA GCCAGTGTGG TAAATATATG CCAGTTGGTG CTCCCAGAAT 
0181 TTCACCCTGC CTCTATGAAT GCATTTTCAA TAAGACCAAC ACAGTTGTGG ACGGAGCTAT 
0241 TCATCCTGAC AATGCCCGAC TCATGCTGGA GAAGCTTTTC GGTAATCAGG ACTTTGAAGA 
0301 AGCCTATTTC AATGGTTTAA TGGGCTGTTC GGATTCTGTG CAAGAGATGA TTAGCAACAG 
0361 GAGGTCACGG CCCCAAAGAA AAACAGAACA ATGCTCTCCA TTCTCACTTT TCTATGGAAT 
0421 TTGTGCCCAG AGATATGTCT TCAACCATTG TCCATCATCC AGCTGGTCCG GCACTGAATC 
0481 TTGCGAAATG GCCCGATTGC  
 Assemble Data

30072R-2.IR_full       1   GCATATAGCCCTGCTGATCTGCTCATTGCTAGCGATGGCTGGCTGTGATCCAATCGATGT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30072R-2.in silico     1   GCATATAGCCCTGCTGATCTGCTCATTGCTAGCGATGGCTGGCTGTGATCCAATCGATGT 60


30072R-2.IR_full       61  GGACTGTACTCGCAGACAGGATTTCAATATTGTCAAGGACTGCTGTGCCTATCCCACATT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
30072R-2.in silico     61  GGACTGTACTCGCAGACAGGATTTCAATATTGTCAAGGACTGCTGTGTCTATCCCACATT 120


30072R-2.IR_full       121 TAGGTTTGACCAGTTCAAAAGCCAGTGTGGTAAATATATGCCAGTTGGTGCTCCCAGAAT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30072R-2.in silico     121 TAGGTTTGACCAGTTCAAAAGCCAGTGTGGTAAATATATGCCAGTTGGTGCTCCCAGAAT 180


30072R-2.IR_full       181 TTCACCCTGCCTCTATGAATGCATTTTCAATAAGACCAACACAGTTGTGGACGGAGCTAT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30072R-2.in silico     181 TTCACCCTGCCTCTATGAATGCATTTTCAATAAGACCAACACAGTTGTGGACGGAGCTAT 240


30072R-2.IR_full       241 TCATCCTGACAATGCCCGACTCATGCTGGAGAAGCTTTTCGGTAATCAGGACTTTGAAGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30072R-2.in silico     241 TCATCCTGACAATGCCCGACTCATGCTGGAGAAGCTTTTCGGTAATCAGGACTTTGAAGA 300


30072R-2.IR_full       301 AGCCTATTTCAATGGTTTAATGGGCTGTTCGGATTCTGTGCAAGAGATGATTAGCAACAG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30072R-2.in silico     301 AGCCTATTTCAATGGTTTAATGGGCTGTTCGGATTCTGTGCAAGAGATGATTAGCAACAG 360


30072R-2.IR_full       361 GAGGTCACGGCCCCAAAGAAAAACAGAACAATGCTCTCCATTCTCACTTTTCTATGGAAT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30072R-2.in silico     361 GAGGTCACGGCCCCAAAGAAAAACAGAACAATGCTCTCCATTCTCACTTTTCTATGGAAT 420


30072R-2.IR_full       421 TTGTGCCCAGAGATATGTCTTCAACCATTGTCCATCATCCAGCTGGTCCGGCACTGAATC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30072R-2.in silico     421 TTGTGCCCAGAGATATGTCTTCAACCATTGTCCATCATCCAGCTGGTCCGGCACTGAATC 480


30072R-2.IR_full       481 TTGCGAAATGGCCCGANTGN 500
                           |||||||||||||||| || 
30072R-2.in silico     481 TTGCGAAATGGCCCGATTGC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_166052.2  CG30072-RA (Obp50c), mRNA 
0   NM_001015501.1  CG17629-PD.3 (CG17629), mRNA 
0   NM_169856.1  CG31245-RA (CG31245), mRNA 
0   NM_169018.1  CG31530-RA (CG31530), mRNA 
0   NM_176405.1  CG32946-RA (CG32946), mRNA 
0   NM_133065.2  CG32548-RC, transcript variant C (CG32548), mRNA 
0   NM_167617.1  CG32548-RB, transcript variant B (CG32548), mRNA 
0   NM_164350.1  CG2671-RD, transcript variant D (l(2)gl), mRNA 
0   NM_164351.1  CG2671-RE, transcript variant E (l(2)gl), mRNA 
0   NM_164348.1  CG2671-RB, transcript variant B (l(2)gl), mRNA 
0   NM_164352.1  CG2671-RF, transcript variant F (l(2)gl), mRNA 
0   NM_078715.2  CG2671-RC, transcript variant C (l(2)gl), mRNA 
0   NM_164349.1  CG2671-RA, transcript variant A (l(2)gl), mRNA 
0   NM_080342.2  CG1787-RA (Hexo2), mRNA 
0   NM_138175.2  CG7020-RA (DIP2), mRNA 
0   NM_143511.2  CG7946-RA (CG7946), mRNA 
0   NM_137765.2  CG7975-RA (Grx-1), mRNA 
0   NM_079229.1  CG8624-RA, transcript variant A (melt), mRNA 
0   NM_001014572.1  CG8624-RB, transcript variant B (melt), mRNA 
0   NM_168309.1  CG5263-RB, transcript variant B (smg), mRNA 
0   NM_079263.2  CG5263-RA, transcript variant A (smg), mRNA 
0   NM_168310.1  CG5263-RC, transcript variant C (smg), mRNA 
0   NM_058096.3  CG8725-RA (CSN4), mRNA 
0   NM_137367.2  CG18467-RA (CG18467), mRNA 
0   NM_140665.1  CG9674-RA, transcript variant A (CG9674), mRNA 
0   NM_176339.1  CG9674-RD, transcript variant D (CG9674), mRNA 
0   NM_079121.2  CG3416-RA (Mov34), mRNA 
0   NM_001014571.1  CG33556-RA (form3), mRNA 
0   NM_132696.1  CG10996-RA (CG10996), mRNA 
0   NM_001032245.1  CG13344-RB, transcript variant B (CG13344), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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