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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 2993R-4 
 Symbol CG2993  Full Name CG2993 
 CG No CG2993  Old CG No CG2993 
 Synonyms CG2993 
 Accession No (Link to NCBI) NM_141483.2 
 Inserted Chr. lll 
 Insertional Mutation  2 lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCCACAAGGTGTCTACTATGC 
 Primer Seq. 3'
aatctagaggtaccCGGCCCTTTCGATCGTTGTTA 
 Predicted Fragment Size
356 
 IR fragment full Seq
0001 TCCACAAGGT GTCTACTATG CCGGACAGGA GCTATCCGGC GTTGTTGATC TCAGCGTCGA 
0061 CGCCACGAAG CGCATTAAAG GCATCCACGT CACCGTCAGC GGCTATGCCA AGATACGCTG 
0121 GATAAAAAAG GGATATCCGC GCGACAGCGA GCGCGCCATG TGCCGTGCCT ACCGATCGTA 
0181 TCTGTCCTCG CGGTCCTACG TCCTCGGATC CTGCGCGAAC AACTCGAGCA TCGACTGGCC 
0241 GGCCGGCGAG TACTCGTACA CCTTCCACGT GATTCTGCCC GACAATCTGC CTACGTCCTT 
0301 CGACGGCAAG TATGGCCAGA TCCACTACGA GATCATAACA ACGATCGAAA GGGCCG 
 in silico PCR Fragment
0001 TCCACAAGGT GTCTACTATG CCGGACAGGA GCTATCCGGC GTTGTTGATC TCAGCGTCGA 
0061 CGCCACGAAG CGCATTAAAG GCATCCACGT CACCGTCAGC GGCTATGCCA AGATACGCTG 
0121 GATAAAAAAG GGATATCCGC GCGACAGCGA GCGCGCCATG TGCCGTGCCT ACCGATCGTA 
0181 TCTGTCCTCG CGGTCCTACG TCCTCGGATC CTGCGCGAAC AACTCGAGCA TCGACTGGCC 
0241 GGCCGGCGAG TACTCGTACA CCTTCCACGT GATTCTGCCC GACAATCTGC CTACGTCCTT 
0301 CGACGGCAAG TATGGCCAGA TCCACTACGA GATCATAACA ACGATCGAAA GGGCCG 
 Assemble Data

2993R-4.IR_full       1   TCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGATCTCAGCGTCGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2993R-4.in silico     1   TCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGATCTCAGCGTCGA 60


2993R-4.IR_full       61  CGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAGCGGCTATGCCAAGATACGCTG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2993R-4.in silico     61  CGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAGCGGCTATGCCAAGATACGCTG 120


2993R-4.IR_full       121 GATAAAAAAGGGATATCCGCGCGACAGCGAGCGCGCCATGTGCCGTGCCTACCGATCGTA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2993R-4.in silico     121 GATAAAAAAGGGATATCCGCGCGACAGCGAGCGCGCCATGTGCCGTGCCTACCGATCGTA 180


2993R-4.IR_full       181 TCTGTCCTCGCGGTCCTACGTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2993R-4.in silico     181 TCTGTCCTCGCGGTCCTACGTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCC 240


2993R-4.IR_full       241 GGCCGGCGAGTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCTT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2993R-4.in silico     241 GGCCGGCGAGTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCTT 300


2993R-4.IR_full       301 CGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAAAGGGCCG 356
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2993R-4.in silico     301 CGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAAAGGGCCG 356

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   338  NM_141483.2  CG2993-RA (CG2993), mRNA 
0   NM_057660.2  CG4758-RA, transcript variant A (Trp1), mRNA 
0   NM_164885.1  CG4758-RB, transcript variant B (Trp1), mRNA 
0   NM_143794.2  CG7129-RA, transcript variant A (l(3)05822), mRNA 
0   NM_169802.1  CG7129-RB, transcript variant B (l(3)05822), mRNA 
0   NM_079725.2  CG7050-RA (Nrx-1), mRNA 
0   NM_206761.1  CG33251-RA (CG33251), mRNA 
0   NM_164409.2  CG4896-RC, transcript variant C (CG4896), mRNA 
0   NM_164410.2  CG4896-RA, transcript variant A (CG4896), mRNA 
0   NM_134739.5  CG4896-RD, transcript variant D (CG4896), mRNA 
0   NM_164411.2  CG4896-RB, transcript variant B (CG4896), mRNA 
0   NM_135355.2  CG8282-RA (Snx6), mRNA 
0   NM_132057.2  CG14447-RA (Grip), mRNA 
0   NM_057276.3  CG4178-RA (Lsp1beta), mRNA 
0   NM_132637.1  CG2453-RA (CG2453), mRNA 
0   NM_136381.1  CG15909-RA (CG15909), mRNA 
0   NM_057424.3  CG1913-RA (alphaTub84B), mRNA 
0   NM_080266.2  CG2259-RA, transcript variant A (Gclc), mRNA 
0   NM_206650.1  CG2259-RB, transcript variant B (Gclc), mRNA 
0   NM_169177.1  CG2507-RB, transcript variant B (sas), mRNA 
0   NM_057263.2  CG2507-RA, transcript variant A (sas), mRNA 
0   NM_166564.1  CG30272-RA (CG30272), mRNA 
0   NM_206099.1  CG8878-RB, transcript variant B (CG8878), mRNA 
0   NM_136889.2  CG8878-RA, transcript variant A (CG8878), mRNA 
0   NM_058126.3  CG10149-RB, transcript variant B (Rpn6), mRNA 
0   NM_080298.2  CG11415-RA (Tsp2A), mRNA 
0   NM_142748.2  CG6015-RA (CG6015), mRNA 
0   NM_165533.1  CG1624-RA, transcript variant A (dpld), mRNA 
0   NM_165534.1  CG1624-RB, transcript variant B (dpld), mRNA 
0   NM_080033.2  CG1624-RC, transcript variant C (dpld), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
+- 
DC
DM
 
VM
 
VB
 
Caspase-3 signal
N
++ 
DB
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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