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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 2974R-1 
 Symbol CG2974  Full Name CG2974 
 CG No CG2974  Old CG No CG2974 
 Synonyms CG2974 
 Accession No (Link to NCBI) NM_132376.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGAAGCACAAAGGTCACCGCTG 
 Primer Seq. 3'
aatctagaggtaccTGCTGCATTAGTTCCACGACG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GAAGCACAAA GGTCACCGCT GAAAAACAAA GCGATATTAC GCCGGCAAGA TAATGGATTT 
0061 AAAGTATCTA AATCAAAAGG AGGCCATTGC CGTGGACCAG GAGCTATTCA ACGATTACAA 
0121 GTTCAGTGTG GATCAGCTAA TGGAGCTGGC GGGCTTGAGC TGCGCCCATG CTGTGGCCAA 
0181 ATGCTTCCCG GCAGAGAAGC ATCCACGAAT TCTCGTTTGC TGTGGACCAG GAAACAATGG 
0241 AGGCGACGGC TTGGTGGCCG CCCGCCACCN TCGCCCTCAT GgGNTACACG CCCACCATCT 
0301 ACTATCCCAA GCCNGACgGC CAAGCCGCTC TTCGAGAACC TCAGCCACCA GTGCCAACAG 
0361 ATGGACATCT GTGACGTGAA GGAGTGTCCG TCGGTGGAGA GTGCCGCCCG TGACTATGAT 
0421 CTCATTCTGG ACGCGCTCTT CGGATTCAGC TTCAAGCCGC CGGTGCGAGC GGACTTTTGT 
0481 CGCCGTCCGT GGAACTAATG CAGCA 
 in silico PCR Fragment
0001 GAAGCACAAA GGTCACCGCT GAAAAAC-AA GCGATTTTAC GCCGGCAAGA GAATGGATTT 
0061 AAAGTATCTA AATCAAAAGG AGGCCATCGC CGTGGACCAG GAACTATTCA ACGATTACAA 
0121 GTTCAGTGTG GATCAGCTAA TGGAGCTGGC GGGCTTGAGC TGCGCCCATG CTGTGGCCAA 
0181 ATGCTTCCCG GCAGAGAAGC ATCCACGAAT TCTCGTTTGC TGTGGACCAG GAAACAATGG 
0241 AGGCGACGGC TTGGTTGCCG CCCGCCACC- TCGCCCTCAT GGGCTACACA CCCACCATCT 
0301 ACTATCCCAA GCC-GACGGC CAAGCCGCTC TTCGAGAACC TCAGCCACCA GTGCCAACAG 
0361 ATGGACATCT GCGACGTGAA GGAGTGTCCG TCGGTGGAGA GTGCCGCCCG TGACTATGAT 
0421 CTCATTCTGG ATGCGCTCTT CGGATTCAGC TTCAAGCCGC CGGTGCGAGC GGAC-TTTGT 
0481 CGCCGT-CGT GGAACTAATG CAGCA 
 Assemble Data

2974R-1.IR_full       1   GAAGCACAAAGGTCACCGCTGAAAAACAAAGCGATATTACGCCGGCAAGATAATGGATTT 60
                          ||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||
2974R-1.in silico     1   GAAGCACAAAGGTCACCGCTGAAAAAC-AAGCGATTTTACGCCGGCAAGAGAATGGATTT 60


2974R-1.IR_full       61  AAAGTATCTAAATCAAAAGGAGGCCATTGCCGTGGACCAGGAGCTATTCAACGATTACAA 120
                          ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
2974R-1.in silico     61  AAAGTATCTAAATCAAAAGGAGGCCATCGCCGTGGACCAGGAACTATTCAACGATTACAA 120


2974R-1.IR_full       121 GTTCAGTGTGGATCAGCTAATGGAGCTGGCGGGCTTGAGCTGCGCCCATGCTGTGGCCAA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2974R-1.in silico     121 GTTCAGTGTGGATCAGCTAATGGAGCTGGCGGGCTTGAGCTGCGCCCATGCTGTGGCCAA 180


2974R-1.IR_full       181 ATGCTTCCCGGCAGAGAAGCATCCACGAATTCTCGTTTGCTGTGGACCAGGAAACAATGG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2974R-1.in silico     181 ATGCTTCCCGGCAGAGAAGCATCCACGAATTCTCGTTTGCTGTGGACCAGGAAACAATGG 240


2974R-1.IR_full       241 AGGCGACGGCTTGGTGGCCGCCCGCCACCNTCGCCCTCATGGGNTACACGCCCACCATCT 300
                          ||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||
2974R-1.in silico     241 AGGCGACGGCTTGGTTGCCGCCCGCCACC-TCGCCCTCATGGGCTACACACCCACCATCT 300


2974R-1.IR_full       301 ACTATCCCAAGCCNGACGGCCAAGCCGCTCTTCGAGAACCTCAGCCACCAGTGCCAACAG 360
                          ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
2974R-1.in silico     301 ACTATCCCAAGCC-GACGGCCAAGCCGCTCTTCGAGAACCTCAGCCACCAGTGCCAACAG 360


2974R-1.IR_full       361 ATGGACATCTGTGACGTGAAGGAGTGTCCGTCGGTGGAGAGTGCCGCCCGTGACTATGAT 420
                          ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
2974R-1.in silico     361 ATGGACATCTGCGACGTGAAGGAGTGTCCGTCGGTGGAGAGTGCCGCCCGTGACTATGAT 420


2974R-1.IR_full       421 CTCATTCTGGACGCGCTCTTCGGATTCAGCTTCAAGCCGCCGGTGCGAGCGGACTTTTGT 480
                          ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
2974R-1.in silico     421 CTCATTCTGGATGCGCTCTTCGGATTCAGCTTCAAGCCGCCGGTGCGAGCGGAC-TTTGT 480


2974R-1.IR_full       481 CGCCGTCCGTGGAACTAATGCAGCA 505
                          |||||| ||||||||||||||||||
2974R-1.in silico     481 CGCCGT-CGTGGAACTAATGCAGCA 505

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_132376.1  CG2974-RA (CG2974), mRNA 
0   NM_139460.1  CG9004-RA (CG9004), mRNA 
0   NM_142961.3  CG6159-RA (sec10), mRNA 
0   NM_143271.1  CG14257-RA (CG14257), mRNA 
0   NM_137748.2  CG10080-RA (CG10080), mRNA 
0   NM_167266.1  CG12101-RB, transcript variant B (Hsp60), mRNA 
0   NM_078560.2  CG12101-RA, transcript variant A (Hsp60), mRNA 
0   NM_079205.3  CG7507-RA, transcript variant A (Dhc64C), mRNA 
0   NM_057788.3  CG8396-RA (Ssb-c31a), mRNA 
0   NM_139692.1  CG4611-RA (CG4611), mRNA 
0   NM_136069.2  CG10600-RA (CG10600), mRNA 
0   NM_206067.1  CG1429-RF, transcript variant F (Mef2), mRNA 
0   NM_057670.2  CG1429-RC, transcript variant C (Mef2), mRNA 
0   NM_057672.2  CG1429-RD, transcript variant D (Mef2), mRNA 
0   NM_057673.2  CG1429-RA, transcript variant A (Mef2), mRNA 
0   NM_057671.2  CG1429-RB, transcript variant B (Mef2), mRNA 
0   NM_143986.1  CG13826-RA (CG13826), mRNA 
0   NM_139988.3  CG5978-RA (CG5978), mRNA 
0   NM_165314.1  CG5978-RA (CG5978), mRNA,6-bisphosphatase CG31692-RB, transcript variant B (fbp), mRNA 
0   NM_136157.2  CG5978-RA (CG5978), mRNA,6-bisphosphatase CG31692-RB, transcript variant B (fbp), mRNA,6-bisphosphatase CG31692-RA, transcript variant A (fbp), mRNA 
0   NM_135237.1  CG13773-RA (CG13773), mRNA 
0   NM_164672.2  CG9098-RB, transcript variant B (CG9098), mRNA 
0   NM_135135.3  CG9098-RA, transcript variant A (CG9098), mRNA 
0   NM_142340.2  CG5148-RA (CG5148), mRNA 
0   NM_165509.1  CG11084-RB, transcript variant B (pk), mRNA 
0   NM_165508.1  CG11084-RA, transcript variant A (pk), mRNA 
0   NM_165512.1  CG11084-RC, transcript variant C (pk), mRNA 
0   NM_139987.2  CG6372-RA (CG6372), mRNA 
0   NM_132253.1  CG12116-RA (CG12116), mRNA 
0   NM_138130.2  CG30420-RB, transcript variant B (Atf-2), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
DC
++ 
DM
VM
 
VB
 
Caspase-3 signal
N
 
DB
++ 
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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