NIG-Fly - Fly Stocks of National Institute of Genetics -

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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID 2691R-1

Symbol CG2691 Full Name CG2691

CG No CG2691 Old CG No CG2691

Synonyms CG2691

Accession No (Link to NCBI) NM_132678.2

Inserted Chr. lll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees lethal

Map Viewer

Reference
[Please submit your publication] Park J, Lee J, Kim JH, Lee J, Park H, Lim C.
ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.
Nucleic Acids Res (2021) 49(19) 11294-11311 [ PubMed ID = 34551427 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgATCGAAGCTAAAGCGCAATGG

Primer Seq. 3'

aatctagaggtaccGCAGGAAATACTCTGTAGACG

Predicted Fragment Size

IR fragment full Seq

0001 ATCGAAGCTA AAGCGCAATG GCAAGGGAAA GACATGGAGC AGAGGCTGAA TCGGCCACCT 
0061 CCAATCCCAC CCAGATGAAG CACCGCATGA AGGCCAAATC GCGATTCTTT CAGCCCAATT 
0121 TAAGTTTGGC TGCAGCCACG ACCACCGGCC TCACCATGGA GGCGGTCCAC AAGCATGAGC 
0181 AGAGTCAGGC CTTTAATGCG GAAACCACAA CGGTTAACGA TGTGGCCGGC AGTTTGAGAA 
0241 GTTTCAAACT GGATGACGAT GATGACGGAA TGTCCGGTTC CGGCACCGCT CCCANCCGGC 
0301 ACCGCCCCCA CCGGCACCAT CAAAACCTTC CAGACCTTCG CCTCCAACTA CAGCGGTTGC 
0361 AGCAACACAT GCTTCCAGAA ACTGGTCACC AGCTTCCGGT CCTCGTCCGC TCTTCACAAG 
0421 GAGATGCTGG CCATTCTGAG CGCCCTCACC GAAATAATCC GCGAGAACGG CGGTGGCGAG 
0481 TCGTCTACAG AGTATTTCNC TNc

in silico PCR Fragment

0001 ATCGAAGCTA AAGCGCAATG GCAAGGGAAA GACATGGAGC AGAGGC-GAA TCGGCCACCT 
0061 CCAATCCCAC CCAGATGAAG CACCGCATGA AGGCCAAATC GCGATTCTTT CAGCCCAATT 
0121 TAAGTTTGGC TGCAGCCACG ACCACCGGCC TCACCATGGA GGCGGTCCAC AAGCATGAGC 
0181 AGAGTCAGGC CTTTAATGCG GAAACCACAA CGGTTAACGA TGTGGCCGGC AGTTTGAGAA 
0241 GTTTCAAACT GGATGACGAT GATGACGGAA TGTCCGGTTC CGGCACCGCT CCCA-CCGGC 
0301 ACCGCCCCCA CCGGCACCAT CAAAACCTTC CAGACCTTCG CCTCCAACTA CAGCGGTTGC 
0361 AGCAACACAT GCTTCCAGAA ACTGGTCACC AGCTTCCGGT CCTCGTCCGC TCTTCACAAG 
0421 GAGATGCTGG CCATTCTGAG CGCCCTCACC GAAATAATCC GCGAGAACGG CGGTGGCGAG 
0481 TCGTCTACAG AGTATTTC-C TGC

Assemble Data


2691R-1.IR_full       1   ATCGAAGCTAAAGCGCAATGGCAAGGGAAAGACATGGAGCAGAGGCTGAATCGGCCACCT 60
                          |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
2691R-1.in silico     1   ATCGAAGCTAAAGCGCAATGGCAAGGGAAAGACATGGAGCAGAGGC-GAATCGGCCACCT 60


2691R-1.IR_full       61  CCAATCCCACCCAGATGAAGCACCGCATGAAGGCCAAATCGCGATTCTTTCAGCCCAATT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2691R-1.in silico     61  CCAATCCCACCCAGATGAAGCACCGCATGAAGGCCAAATCGCGATTCTTTCAGCCCAATT 120


2691R-1.IR_full       121 TAAGTTTGGCTGCAGCCACGACCACCGGCCTCACCATGGAGGCGGTCCACAAGCATGAGC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2691R-1.in silico     121 TAAGTTTGGCTGCAGCCACGACCACCGGCCTCACCATGGAGGCGGTCCACAAGCATGAGC 180


2691R-1.IR_full       181 AGAGTCAGGCCTTTAATGCGGAAACCACAACGGTTAACGATGTGGCCGGCAGTTTGAGAA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2691R-1.in silico     181 AGAGTCAGGCCTTTAATGCGGAAACCACAACGGTTAACGATGTGGCCGGCAGTTTGAGAA 240


2691R-1.IR_full       241 GTTTCAAACTGGATGACGATGATGACGGAATGTCCGGTTCCGGCACCGCTCCCANCCGGC 300
                          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
2691R-1.in silico     241 GTTTCAAACTGGATGACGATGATGACGGAATGTCCGGTTCCGGCACCGCTCCCA-CCGGC 300


2691R-1.IR_full       301 ACCGCCCCCACCGGCACCATCAAAACCTTCCAGACCTTCGCCTCCAACTACAGCGGTTGC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2691R-1.in silico     301 ACCGCCCCCACCGGCACCATCAAAACCTTCCAGACCTTCGCCTCCAACTACAGCGGTTGC 360


2691R-1.IR_full       361 AGCAACACATGCTTCCAGAAACTGGTCACCAGCTTCCGGTCCTCGTCCGCTCTTCACAAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2691R-1.in silico     361 AGCAACACATGCTTCCAGAAACTGGTCACCAGCTTCCGGTCCTCGTCCGCTCTTCACAAG 420


2691R-1.IR_full       421 GAGATGCTGGCCATTCTGAGCGCCCTCACCGAAATAATCCGCGAGAACGGCGGTGGCGAG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2691R-1.in silico     421 GAGATGCTGGCCATTCTGAGCGCCCTCACCGAAATAATCCGCGAGAACGGCGGTGGCGAG 480


2691R-1.IR_full       481 TCGTCTACAGAGTATTTCNCTNC 503
                          |||||||||||||||||| || |
2691R-1.in silico     481 TCGTCTACAGAGTATTTC-CTGC 503

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	10	4	10	NM_132678.2	CG2691-RA (CG2691), mRNA
0.41	2	3	3	2	NM_169854.1	CG31212-RA (CG31212), mRNA
0	0	5	2	3	NM_142585.1	CG4733-RA (CG4733), mRNA
0	0	3	4	13	NM_142078.1	CG12402-RA (CG12402), mRNA
0	0	2	5	8	NM_078977.2	CG10897-RA, transcript variant A (tou), mRNA
0	0	2	4	2	NM_140625.2	CG4818-RA (CG4818), mRNA
0	0	2	2	5	NM_206294.1	CG33275-RA, transcript variant A (CG33275), mRNA
0	0	2	2	5	NM_206295.1	CG33275-RB, transcript variant B (CG33275), mRNA
0	0	2	2	4	NM_206099.1	CG8878-RB, transcript variant B (CG8878), mRNA
0	0	2	2	4	NM_136889.2	CG8878-RA, transcript variant A (CG8878), mRNA
0	0	2	2	1	NM_137618.1	CG9864-RA (CG9864), mRNA
0	0	1	5	4	NM_135642.2	CG6181-RA, transcript variant A (CG6181), mRNA
0	0	1	5	4	NM_164957.1	CG6181-RB, transcript variant B (CG6181), mRNA
0	0	1	5	3	NM_132130.1	CG12796-RA (CG12796), mRNA
0	0	1	5	2	NM_078583.2	CG2559-RA (Lsp1alpha), mRNA
0	0	1	4	2	NM_080012.2	CG4201-RA (ird5), mRNA
0	0	1	3	3	NM_137927.1	CG9871-RA (CG9871), mRNA
0	0	1	3	2	NM_001014582.1	CG10488-RB, transcript variant B (eyg), mRNA
0	0	1	3	2	NM_079318.2	CG10488-RA, transcript variant A (eyg), mRNA
0	0	1	2	8	NM_141157.2	CG11238-RA (l(3)04053), mRNA
0	0	1	2	5	NM_057701.3	CG5820-RD, transcript variant D (Gp150), mRNA
0	0	1	2	5	NM_166529.1	CG5820-RC, transcript variant C (Gp150), mRNA
0	0	1	2	5	NM_166528.1	CG5820-RB, transcript variant B (Gp150), mRNA
0	0	1	2	5	NM_166527.1	CG5820-RA, transcript variant A (Gp150), mRNA
0	0	1	2	2	NM_176104.1	CG33087-RC (CG33087), mRNA
0	0	0	8	5	NM_131939.4	CG17592-RB, transcript variant B (Usf), mRNA
0	0	0	8	5	NM_167010.1	CG17592-RA, transcript variant A (Usf), mRNA
0	0	0	8	5	NM_139839.3	CG32381-RA (unc-13-4A), mRNA
0	0	0	7	35	NM_143342.1	CG5514-RB, transcript variant B (CG5514), mRNA
0	0	0	7	35	NM_170361.1	CG5514-RA, transcript variant A (CG5514), mRNA

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