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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
2617R-1 |
| Symbol |
CG2617 |
Full Name |
CG2617 |
| CG No |
CG2617 |
Old CG No |
CG2617 |
| Synonyms |
38E.2, CG2617 |
| Accession No (Link to NCBI) |
NM_136206.1 |
| Inserted Chr. |
ll |
| Insertional Mutation |
3 lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Fan W, Lam SM, Xin J, Yang X, Liu Z, Liu Y, Wang Y, Shui G, Huang X.
Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition.
PLoS Genet (2017) 13(3) e1006664
[
PubMed ID = 28273089
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
Du J, Zhang J, Su Y, Liu M, Ospina JK, Yang S, Zhu AJ.
In vivo RNAi screen reveals neddylation genes as novel regulators of Hedgehog signaling.
PLoS One (2011) 6(9) e24168
[
PubMed ID = 21931660
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTGATGCAGTGATTACTGGCGT |
| Primer Seq. 3' |
aatctagaggtaccGCGTCTTCGTCGAGATTTCAA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TGATGCAGTG ATTACTGGCG TGTACTACTT CCTGTGGGGC AGCTACCTCG TCGGCTTCTG
0061 TTTGGTGGAG GGCAGCAGGA AAGGATGGAA TCTGTTGAGA TGCGCGGTCA GGAATACCAA
0121 CGAGGGCATC CGCGACTTGG GCCTCATCAC GCTAGATGTG GCGGACTACT TCTACGGCGG
0181 CACCAAAGGC GGGCTCAAGA ATGTACTCGA TTTTGGTCAC TGCATATCCC GGTTCATCTG
0241 CAACTTACTC ATCGATCTGG GTGATGGCAT CTTGTGGCTG CTGATGCTGC TGCCGAGGGC
0301 CATACTATTC CTCTGGGACT GCCTCCTAGA CTTTGTGGTG CACGCAATTG TGGCCAATGG
0361 CTTGAGCTTG TTGAACAGTG CGTTCCGGGC CTCGATAGGA TTGGCCCTGC TCCTCGTTCT
0421 CTATATGTTC CGCCGCTATG TGTACCTGAT GCTCATCTAC CTGCTGCAAC GTGGACGCAT
0481 TGAAATCTCG ACGAAGACGC |
| in silico PCR Fragment |
0001 TGATGCAGTG ATTACTGGCG TGTACTACTT CCTGTGGGGC AGCTACCTCG TCGGCTTCTG
0061 TTTGGTGGAG GGCAGCAGGA AAGGATGGAA TCTGTTGAGA TGCGCGGTCA GGAATATCAA
0121 CGAGGGCATC CGCGACTTGG GCCTCATCAC GCTAGATGTG GCGGACTACT TCTACGGCGG
0181 CACCAAAGGC GGGCTCAAGA ATGTACTCGA TTTTGGTCAC TGCATATCCC GATTCATCTG
0241 CAACTTACTC ATCGATCTGG GTGATGGCAT CTTGTGGCTG CTGATGCTGC TGCCGAGGGC
0301 CATACTATTC CTCTGGGACT GCCTCCTAGA CTTTGTGGTG CACTCAATCG TGGCCCATGG
0361 CTTGAGCTTG CTGAACAGTG CGTTCCGGGC CTCGATAGGA TTGGCCCTGC TCCTCGTTCT
0421 CTATATGTTC CGCCGCTATG TGTACCTGAT GCTCATCTAC CTGCTGCAAC GTGGACGCAT
0481 TGAAATCTCG ACGAAGACGC |
| Assemble Data |
2617R-1.IR_full 1 TGATGCAGTGATTACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCGTCGGCTTCTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2617R-1.in silico 1 TGATGCAGTGATTACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCGTCGGCTTCTG 60
2617R-1.IR_full 61 TTTGGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGATGCGCGGTCAGGAATACCAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
2617R-1.in silico 61 TTTGGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGATGCGCGGTCAGGAATATCAA 120
2617R-1.IR_full 121 CGAGGGCATCCGCGACTTGGGCCTCATCACGCTAGATGTGGCGGACTACTTCTACGGCGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2617R-1.in silico 121 CGAGGGCATCCGCGACTTGGGCCTCATCACGCTAGATGTGGCGGACTACTTCTACGGCGG 180
2617R-1.IR_full 181 CACCAAAGGCGGGCTCAAGAATGTACTCGATTTTGGTCACTGCATATCCCGGTTCATCTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
2617R-1.in silico 181 CACCAAAGGCGGGCTCAAGAATGTACTCGATTTTGGTCACTGCATATCCCGATTCATCTG 240
2617R-1.IR_full 241 CAACTTACTCATCGATCTGGGTGATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2617R-1.in silico 241 CAACTTACTCATCGATCTGGGTGATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGC 300
2617R-1.IR_full 301 CATACTATTCCTCTGGGACTGCCTCCTAGACTTTGTGGTGCACGCAATTGTGGCCAATGG 360
||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||
2617R-1.in silico 301 CATACTATTCCTCTGGGACTGCCTCCTAGACTTTGTGGTGCACTCAATCGTGGCCCATGG 360
2617R-1.IR_full 361 CTTGAGCTTGTTGAACAGTGCGTTCCGGGCCTCGATAGGATTGGCCCTGCTCCTCGTTCT 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
2617R-1.in silico 361 CTTGAGCTTGCTGAACAGTGCGTTCCGGGCCTCGATAGGATTGGCCCTGCTCCTCGTTCT 420
2617R-1.IR_full 421 CTATATGTTCCGCCGCTATGTGTACCTGATGCTCATCTACCTGCTGCAACGTGGACGCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2617R-1.in silico 421 CTATATGTTCCGCCGCTATGTGTACCTGATGCTCATCTACCTGCTGCAACGTGGACGCAT 480
2617R-1.IR_full 481 TGAAATCTCGACGAAGACGC 500
||||||||||||||||||||
2617R-1.in silico 481 TGAAATCTCGACGAAGACGC 500
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_136206.1 |
CG2617-RA (CG2617), mRNA |
| 0.62 |
3 |
5 |
11 |
15 |
NM_142710.2 |
CG16791-RA (CG16791), mRNA |
| 0.2 |
1 |
4 |
3 |
22 |
NM_141487.2 |
CG17816-RC, transcript variant C (CG17816), mRNA |
| 0.2 |
1 |
4 |
3 |
22 |
NM_169198.1 |
CG17816-RB, transcript variant B (CG17816), mRNA |
| 0.2 |
1 |
4 |
3 |
22 |
NM_169199.1 |
CG17816-RA, transcript variant A (CG17816), mRNA |
| 0.2 |
1 |
4 |
3 |
22 |
NM_206458.2 |
CG17816-RD, transcript variant D (CG17816), mRNA |
| 0.2 |
1 |
3 |
2 |
28 |
NM_165836.1 |
CG7776-RB, transcript variant B (E(Pc)), mRNA |
| 0.2 |
1 |
3 |
2 |
28 |
NM_078974.2 |
CG7776-RA, transcript variant A (E(Pc)), mRNA |
| 0 |
0 |
9 |
18 |
76 |
NM_168179.1 |
CG32394-RA (CG32394), mRNA |
| 0 |
0 |
6 |
16 |
50 |
NM_001014527.1 |
CG8787-RB, transcript variant B (Asx), mRNA |
| 0 |
0 |
6 |
16 |
50 |
NM_166057.1 |
CG8787-RA, transcript variant A (Asx), mRNA |
| 0 |
0 |
6 |
10 |
35 |
NM_078977.2 |
CG10897-RA, transcript variant A (tou), mRNA |
| 0 |
0 |
5 |
14 |
49 |
NM_001014630.1 |
CG33547-RA (Rim), mRNA |
| 0 |
0 |
5 |
11 |
47 |
NM_137081.2 |
CG30483-RA (Prosap), mRNA |
| 0 |
0 |
5 |
9 |
18 |
NM_138988.2 |
CG11405-RA (A3-3), mRNA |
| 0 |
0 |
5 |
3 |
26 |
NM_176037.1 |
CG32972-RB, transcript variant B (CG32972), mRNA |
| 0 |
0 |
5 |
3 |
26 |
NM_205987.1 |
CG32972-RA, transcript variant A (CG32972), mRNA |
| 0 |
0 |
4 |
23 |
58 |
NM_132665.1 |
CG15753-RA (CG15753), mRNA |
| 0 |
0 |
4 |
10 |
34 |
NM_169652.2 |
CG31302-RA, transcript variant A (CG31302), mRNA |
| 0 |
0 |
4 |
10 |
34 |
NM_169653.2 |
CG31302-RB, transcript variant B (CG31302), mRNA |
| 0 |
0 |
4 |
10 |
34 |
NM_169654.2 |
CG31302-RC, transcript variant C (CG31302), mRNA |
| 0 |
0 |
4 |
9 |
38 |
NM_142259.2 |
CG10278-RA (GATAe), mRNA |
| 0 |
0 |
4 |
7 |
30 |
NM_165232.1 |
CG5674-RB, transcript variant B (CG5674), mRNA |
| 0 |
0 |
4 |
7 |
30 |
NM_136012.4 |
CG5674-RA, transcript variant A (CG5674), mRNA |
| 0 |
0 |
4 |
7 |
30 |
NM_165233.1 |
CG5674-RC, transcript variant C (CG5674), mRNA |
| 0 |
0 |
4 |
7 |
26 |
NM_078933.2 |
CG11194-RA (Hey), mRNA |
| 0 |
0 |
4 |
6 |
33 |
NM_130720.2 |
CG12632-RB (fd3F), mRNA |
| 0 |
0 |
4 |
4 |
26 |
NM_080531.2 |
CG5481-RA (lea), mRNA |
| 0 |
0 |
3 |
31 |
73 |
NM_079909.2 |
CG3327-RA, transcript variant A (E23), mRNA |
| 0 |
0 |
3 |
31 |
73 |
NM_205900.1 |
CG3327-RC, transcript variant C (E23), mRNA |
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